RNA–Protein interactions for RNA: ENST00000244360.6

RNF39-201, Transcript of ring finger protein 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF39, Length 2,206 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39-201ENST00000244360 CCNB3Q8WWL7 1395 aa32.71■■■□□ 2.83
RNF39-201ENST00000244360 GAPVD1Q14C86 1478 aa32.7■■■□□ 2.83
RNF39-201ENST00000244360 CFAP43Q8NDM7 1665 aa32.7■■■□□ 2.82
RNF39-201ENST00000244360 PCF11O94913 1555 aaKnown RBP32.69■■■□□ 2.82
RNF39-201ENST00000244360 LRRC9Q6ZRR7 1453 aa32.68■■■□□ 2.82
RNF39-201ENST00000244360 TARBP1Q13395 1621 aaKnown RBP32.66■■■□□ 2.82
RNF39-201ENST00000244360 TDRD9Q8NDG6 1382 aaKnown RBP32.66■■■□□ 2.82
RNF39-201ENST00000244360 AQRO60306 1485 aaKnown RBP eCLIP32.65■■■□□ 2.82
RNF39-201ENST00000244360 FYCO1Q9BQS8 1478 aa32.62■■■□□ 2.81
RNF39-201ENST00000244360 FHOD3Q2V2M9 1422 aa32.61■■■□□ 2.81
RNF39-201ENST00000244360 CLSPNQ9HAW4 1339 aa32.61■■■□□ 2.81
RNF39-201ENST00000244360 SCAF1Q9H7N4 1312 aaKnown RBP32.6■■■□□ 2.81
RNF39-201ENST00000244360 CASKIN1Q8WXD9 1431 aa32.58■■■□□ 2.81
RNF39-201ENST00000244360 DIEXFQ68CQ4 756 aaKnown RBP32.58■■■□□ 2.81
RNF39-201ENST00000244360 DHX57Q6P158 1386 aaKnown RBP32.56■■■□□ 2.8
RNF39-201ENST00000244360 SAMD9Q5K651 1589 aa32.53■■■□□ 2.8
RNF39-201ENST00000244360 P3H3Q8IVL6 736 aa32.52■■■□□ 2.8
RNF39-201ENST00000244360 MRC2Q9UBG0 1479 aa32.51■■■□□ 2.79
RNF39-201ENST00000244360 FMN1Q68DA7 1419 aa32.5■■■□□ 2.79
RNF39-201ENST00000244360 ZNF316A6NFI3 1004 aaPredicted RBP32.49■■■□□ 2.79
RNF39-201ENST00000244360 PHLDB1Q86UU1 1377 aa32.47■■■□□ 2.79
RNF39-201ENST00000244360 SNAPC4Q5SXM2 1469 aa32.45■■■□□ 2.79
RNF39-201ENST00000244360 PELP1Q8IZL8 1130 aaKnown RBP32.43■■■□□ 2.78
RNF39-201ENST00000244360 PBRM1Q86U86 1689 aa32.43■■■□□ 2.78
RNF39-201ENST00000244360 ACIN1Q9UKV3 1341 aaKnown RBP32.41■■■□□ 2.78
RNF39-201ENST00000244360 ADAMTS12P58397 1594 aa32.34■■■□□ 2.77
RNF39-201ENST00000244360 CENPBP07199 599 aaPredicted RBP32.34■■■□□ 2.77
RNF39-201ENST00000244360 THOC2Q8NI27 1593 aaKnown RBP32.32■■■□□ 2.76
RNF39-201ENST00000244360 WDR62O43379 1518 aa32.31■■■□□ 2.76
RNF39-201ENST00000244360 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.3■■■□□ 2.76
RNF39-201ENST00000244360 GRIN2BQ13224 1484 aa32.29■■■□□ 2.76
RNF39-201ENST00000244360 ATP1B4Q9UN42 357 aaPredicted RBP32.28■■■□□ 2.76
RNF39-201ENST00000244360 IFT140Q96RY7 1462 aa32.27■■■□□ 2.76
RNF39-201ENST00000244360 RAB3GAP2Q9H2M9 1393 aa32.26■■■□□ 2.76
RNF39-201ENST00000244360 ITGAEP38570 1179 aa32.24■■■□□ 2.75
RNF39-201ENST00000244360 LRRIQ1Q96JM4 1722 aa32.23■■■□□ 2.75
RNF39-201ENST00000244360 SETD5Q9C0A6 1442 aa32.22■■■□□ 2.75
RNF39-201ENST00000244360 NEUROD1Q13562 356 aa32.22■■■□□ 2.75
RNF39-201ENST00000244360 IQGAP2Q13576 1575 aa32.2■■■□□ 2.74
RNF39-201ENST00000244360 FAM50AQ14320 339 aaKnown RBP32.15■■■□□ 2.74
RNF39-201ENST00000244360 FGD6Q6ZV73 1430 aa32.14■■■□□ 2.74
RNF39-201ENST00000244360 MAPKBP1O60336 1514 aa32.13■■■□□ 2.73
RNF39-201ENST00000244360 ZNF608Q9ULD9 1512 aaPredicted RBP32.13■■■□□ 2.73
RNF39-201ENST00000244360 MTUS2Q5JR59 1369 aa32.13■■■□□ 2.73
RNF39-201ENST00000244360 EHBP1L1Q8N3D4 1523 aa32.1■■■□□ 2.73
RNF39-201ENST00000244360 CCDC18Q5T9S5 1454 aa32.08■■■□□ 2.73
RNF39-201ENST00000244360 UGGT2Q9NYU1 1516 aa32.08■■■□□ 2.73
RNF39-201ENST00000244360 NCOA2Q15596 1464 aa32.05■■■□□ 2.72
RNF39-201ENST00000244360 HECW1Q76N89 1606 aa32.04■■■□□ 2.72
RNF39-201ENST00000244360 SUPT6HQ7KZ85 1726 aaKnown RBP32.04■■■□□ 2.72
RNF39-201ENST00000244360 ARHGEF11O15085 1522 aa32.02■■■□□ 2.72
RNF39-201ENST00000244360 MYOM3Q5VTT5 1437 aa32.01■■■□□ 2.71
RNF39-201ENST00000244360 EIF4G3O43432 1585 aaKnown RBP32■■■□□ 2.71
RNF39-201ENST00000244360 MAGI3Q5TCQ9 1506 aa31.97■■■□□ 2.71
RNF39-201ENST00000244360 KIAA0586Q9BVV6 1533 aa31.97■■■□□ 2.71
RNF39-201ENST00000244360 ERCC6Q03468 1493 aa31.95■■■□□ 2.71
RNF39-201ENST00000244360 EPRSP07814 1512 aaKnown RBP31.93■■■□□ 2.7
RNF39-201ENST00000244360 GTF3C3Q9Y5Q9 886 aa31.92■■■□□ 2.7
RNF39-201ENST00000244360 GRIN2AQ12879 1464 aa31.92■■■□□ 2.7
RNF39-201ENST00000244360 HFM1A2PYH4 1435 aa31.88■■■□□ 2.69
RNF39-201ENST00000244360 KIAA0556O60303 1618 aa31.87■■■□□ 2.69
RNF39-201ENST00000244360 PTPRKQ15262 1439 aa31.87■■■□□ 2.69
RNF39-201ENST00000244360 MAGI1Q96QZ7 1491 aaPredicted RBP31.87■■■□□ 2.69
RNF39-201ENST00000244360 DISP1Q96F81 1524 aa31.86■■■□□ 2.69
RNF39-201ENST00000244360 PTPN23Q9H3S7 1636 aa31.85■■■□□ 2.69
RNF39-201ENST00000244360 TCOF1Q13428 1488 aaKnown RBP31.84■■■□□ 2.69
RNF39-201ENST00000244360 MIER1Q8N108 512 aa31.83■■■□□ 2.69
RNF39-201ENST00000244360 CDK13Q14004 1512 aaKnown RBP31.8■■■□□ 2.68
RNF39-201ENST00000244360 SYNJ2O15056 1496 aa31.76■■■□□ 2.67
RNF39-201ENST00000244360 TIMELESSQ9UNS1 1208 aa31.75■■■□□ 2.67
RNF39-201ENST00000244360 NAIPQ13075 1403 aa31.75■■■□□ 2.67
RNF39-201ENST00000244360 MIA2Q96PC5 1412 aa31.73■■■□□ 2.67
RNF39-201ENST00000244360 UACAQ9BZF9 1416 aa31.72■■■□□ 2.67
RNF39-201ENST00000244360 CEP170Q5SW79 1584 aa31.71■■■□□ 2.67
RNF39-201ENST00000244360 RAPGEF6Q8TEU7 1601 aa31.68■■■□□ 2.66
RNF39-201ENST00000244360 NUP153P49790 1475 aaKnown RBP31.68■■■□□ 2.66
RNF39-201ENST00000244360 SIN3AQ96ST3 1273 aa31.67■■■□□ 2.66
RNF39-201ENST00000244360 AKNAQ7Z591 1439 aa31.66■■■□□ 2.66
RNF39-201ENST00000244360 NUP160Q12769 1436 aa31.63■■■□□ 2.65
RNF39-201ENST00000244360 GCC2Q8IWJ2 1684 aa31.62■■■□□ 2.65
RNF39-201ENST00000244360 CHMP7Q8WUX9 453 aaPredicted RBP31.6■■■□□ 2.65
RNF39-201ENST00000244360 YTHDC1Q96MU7 727 aaKnown RBP31.6■■■□□ 2.65
RNF39-201ENST00000244360 ARID3CA6NKF2 412 aa31.49■■■□□ 2.63
RNF39-201ENST00000244360 PPP1R15AO75807 674 aaPredicted RBP31.48■■■□□ 2.63
RNF39-201ENST00000244360 CARMIL2Q6F5E8 1435 aa31.48■■■□□ 2.63
RNF39-201ENST00000244360 CDK11AQ9UQ88 783 aaPredicted RBP31.47■■■□□ 2.63
RNF39-201ENST00000244360 TROQ12816 1431 aaPredicted RBP31.44■■■□□ 2.62
RNF39-201ENST00000244360 PLB1Q6P1J6 1458 aa31.44■■■□□ 2.62
RNF39-201ENST00000244360 DNMT1P26358 1616 aaKnown RBP31.43■■■□□ 2.62
RNF39-201ENST00000244360 RRP7BPQ9NSQ0 103 aa31.42■■■□□ 2.62
RNF39-201ENST00000244360 ROCK1Q13464 1354 aa31.42■■■□□ 2.62
RNF39-201ENST00000244360 DAPK1P53355 1430 aa31.41■■■□□ 2.62
RNF39-201ENST00000244360 JPH4Q96JJ6 628 aa31.41■■■□□ 2.62
RNF39-201ENST00000244360 KDM6BO15054 1643 aa31.41■■■□□ 2.62
RNF39-201ENST00000244360 ADCY10Q96PN6 1610 aa31.41■■■□□ 2.62
RNF39-201ENST00000244360 TONSLQ96HA7 1378 aa31.4■■■□□ 2.62
RNF39-201ENST00000244360 FBLN2P98095 1184 aa31.4■■■□□ 2.62
RNF39-201ENST00000244360 CHIC2Q9UKJ5 165 aa31.4■■■□□ 2.62
RNF39-201ENST00000244360 DENND4BO75064 1496 aaPredicted RBP31.38■■■□□ 2.61
RNF39-201ENST00000244360 ABCC5O15440 1437 aa31.36■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms