RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CARMIL1Q5VZK9 1371 aa14.02□□□□□ -0.17
VPS4B-201ENST00000238497 NUP160Q12769 1436 aa13.99□□□□□ -0.17
VPS4B-201ENST00000238497 CEP170Q5SW79 1584 aa13.98□□□□□ -0.17
VPS4B-201ENST00000238497 PRG4Q92954 1404 aaPredicted RBP13.97□□□□□ -0.17
VPS4B-201ENST00000238497 PCGF6Q9BYE7 350 aa13.95□□□□□ -0.18
VPS4B-201ENST00000238497 RUSC2Q8N2Y8 1516 aa13.95□□□□□ -0.18
VPS4B-201ENST00000238497 ERCC6L2Q5T890 1561 aa13.94□□□□□ -0.18
VPS4B-201ENST00000238497 NPM1P06748 294 aaKnown RBP eCLIP13.93□□□□□ -0.18
VPS4B-201ENST00000238497 RANGAP1P46060 587 aaPredicted RBP13.92□□□□□ -0.18
VPS4B-201ENST00000238497 KIAA0586Q9BVV6 1533 aa13.87□□□□□ -0.19
VPS4B-201ENST00000238497 CUL7Q14999 1698 aa13.86□□□□□ -0.19
VPS4B-201ENST00000238497 RAPGEF2Q9Y4G8 1499 aa13.85□□□□□ -0.19
VPS4B-201ENST00000238497 CSRNP3Q8WYN3 585 aa13.84□□□□□ -0.19
VPS4B-201ENST00000238497 P3H3Q8IVL6 736 aa13.82□□□□□ -0.2
VPS4B-201ENST00000238497 PTPRGP23470 1445 aa13.82□□□□□ -0.2
VPS4B-201ENST00000238497 CARMIL2Q6F5E8 1435 aa13.82□□□□□ -0.2
VPS4B-201ENST00000238497 SHROOM2Q13796 1616 aa13.79□□□□□ -0.2
VPS4B-201ENST00000238497 FAM69CQ0P6D2 419 aa13.78□□□□□ -0.2
VPS4B-201ENST00000238497 PPARGC1BQ86YN6 1023 aaKnown RBP13.78□□□□□ -0.2
VPS4B-201ENST00000238497 ARID3CA6NKF2 412 aa13.78□□□□□ -0.2
VPS4B-201ENST00000238497 TNIKQ9UKE5 1360 aa13.76□□□□□ -0.21
VPS4B-201ENST00000238497 IQGAP2Q13576 1575 aa13.75□□□□□ -0.21
VPS4B-201ENST00000238497 UBTFP17480 764 aaKnown RBP13.75□□□□□ -0.21
VPS4B-201ENST00000238497 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.7□□□□□ -0.22
VPS4B-201ENST00000238497 HNRNPUL2Q1KMD3 747 aaKnown RBP13.7□□□□□ -0.22
VPS4B-201ENST00000238497 PRXQ9BXM0 1461 aa13.7□□□□□ -0.22
VPS4B-201ENST00000238497 KCNH8Q96L42 1107 aa13.67□□□□□ -0.22
VPS4B-201ENST00000238497 ATP1B4Q9UN42 357 aaPredicted RBP13.66□□□□□ -0.22
VPS4B-201ENST00000238497 EEA1Q15075 1411 aa13.66□□□□□ -0.22
VPS4B-201ENST00000238497 DISP1Q96F81 1524 aa13.66□□□□□ -0.22
VPS4B-201ENST00000238497 UACAQ9BZF9 1416 aa13.66□□□□□ -0.22
VPS4B-201ENST00000238497 ADCY10Q96PN6 1610 aa13.64□□□□□ -0.23
VPS4B-201ENST00000238497 GOLGA3Q08378 1498 aa13.63□□□□□ -0.23
VPS4B-201ENST00000238497 UGGT2Q9NYU1 1516 aa13.62□□□□□ -0.23
VPS4B-201ENST00000238497 PLB1Q6P1J6 1458 aa13.6□□□□□ -0.23
VPS4B-201ENST00000238497 KIAA0556O60303 1618 aa13.6□□□□□ -0.23
VPS4B-201ENST00000238497 ASXL2Q76L83 1435 aa13.59□□□□□ -0.23
VPS4B-201ENST00000238497 ABCC2Q92887 1545 aa13.59□□□□□ -0.23
VPS4B-201ENST00000238497 ABCC10Q5T3U5 1492 aa13.59□□□□□ -0.23
VPS4B-201ENST00000238497 CTTNBP2Q8WZ74 1663 aa13.57□□□□□ -0.24
VPS4B-201ENST00000238497 AEBP2Q6ZN18 517 aaPredicted RBP13.57□□□□□ -0.24
VPS4B-201ENST00000238497 FHOD3Q2V2M9 1422 aa13.55□□□□□ -0.24
VPS4B-201ENST00000238497 MAPKBP1O60336 1514 aa13.55□□□□□ -0.24
VPS4B-201ENST00000238497 TSPOAP1O95153 1857 aa13.53□□□□□ -0.24
VPS4B-201ENST00000238497 UHRF1BP1LA0JNW5 1464 aa13.52□□□□□ -0.25
VPS4B-201ENST00000238497 DIP2BQ9P265 1576 aa13.5□□□□□ -0.25
VPS4B-201ENST00000238497 KIF13AQ9H1H9 1805 aa13.49□□□□□ -0.25
VPS4B-201ENST00000238497 KDM5BQ9UGL1 1544 aa13.49□□□□□ -0.25
VPS4B-201ENST00000238497 HRCP23327 699 aa13.47□□□□□ -0.25
VPS4B-201ENST00000238497 PLEKHD1A6NEE1 506 aa13.47□□□□□ -0.25
VPS4B-201ENST00000238497 TRIM26Q12899 539 aaPredicted RBP13.46□□□□□ -0.26
VPS4B-201ENST00000238497 ZCCHC11Q5TAX3 1644 aaKnown RBP13.45□□□□□ -0.26
VPS4B-201ENST00000238497 WDR7Q9Y4E6 1490 aa13.45□□□□□ -0.26
VPS4B-201ENST00000238497 KIF21BO75037 1637 aa13.45□□□□□ -0.26
VPS4B-201ENST00000238497 EPRSP07814 1512 aaKnown RBP13.45□□□□□ -0.26
VPS4B-201ENST00000238497 ABCA8O94911 1581 aa13.43□□□□□ -0.26
VPS4B-201ENST00000238497 CD109Q6YHK3 1445 aa13.43□□□□□ -0.26
VPS4B-201ENST00000238497 ATP10BO94823 1461 aa13.43□□□□□ -0.26
VPS4B-201ENST00000238497 KDM6BO15054 1643 aa13.41□□□□□ -0.26
VPS4B-201ENST00000238497 SAMD9Q5K651 1589 aa13.39□□□□□ -0.27
VPS4B-201ENST00000238497 CDK11AQ9UQ88 783 aaPredicted RBP13.38□□□□□ -0.27
VPS4B-201ENST00000238497 RAPGEF6Q8TEU7 1601 aa13.37□□□□□ -0.27
VPS4B-201ENST00000238497 TEX14Q8IWB6 1497 aa13.37□□□□□ -0.27
VPS4B-201ENST00000238497 NUP153P49790 1475 aaKnown RBP13.36□□□□□ -0.27
VPS4B-201ENST00000238497 EFCAB5A4FU69 1503 aa13.36□□□□□ -0.27
VPS4B-201ENST00000238497 ARHGAP35Q9NRY4 1499 aa13.35□□□□□ -0.27
VPS4B-201ENST00000238497 FMN1Q68DA7 1419 aa13.35□□□□□ -0.27
VPS4B-201ENST00000238497 GLI2P10070 1586 aa13.34□□□□□ -0.27
VPS4B-201ENST00000238497 RAPGEF3O95398 923 aa13.33□□□□□ -0.28
VPS4B-201ENST00000238497 MYT1LQ9UL68 1186 aa13.33□□□□□ -0.28
VPS4B-201ENST00000238497 CLIP1P30622 1438 aa13.33□□□□□ -0.28
VPS4B-201ENST00000238497 CDK13Q14004 1512 aaKnown RBP13.32□□□□□ -0.28
VPS4B-201ENST00000238497 COL17A1Q9UMD9 1497 aaPredicted RBP13.32□□□□□ -0.28
VPS4B-201ENST00000238497 ARID4BQ4LE39 1312 aaPredicted RBP13.29□□□□□ -0.28
VPS4B-201ENST00000238497 MAP3K4Q9Y6R4 1608 aa13.27□□□□□ -0.28
VPS4B-201ENST00000238497 PLPPR3Q6T4P5 718 aa13.26□□□□□ -0.29
VPS4B-201ENST00000238497 MAGI3Q5TCQ9 1506 aa13.26□□□□□ -0.29
VPS4B-201ENST00000238497 PPRC1Q5VV67 1664 aaKnown RBP13.26□□□□□ -0.29
VPS4B-201ENST00000238497 KDM4FA0A1W2PPD8 638 aa13.26□□□□□ -0.29
VPS4B-201ENST00000238497 ZNF777Q9ULD5 760 aaPredicted RBP13.26□□□□□ -0.29
VPS4B-201ENST00000238497 CFAP43Q8NDM7 1665 aa13.24□□□□□ -0.29
VPS4B-201ENST00000238497 EFCAB2Q5VUJ9 269 aa13.23□□□□□ -0.29
VPS4B-201ENST00000238497 HECW1Q76N89 1606 aa13.23□□□□□ -0.29
VPS4B-201ENST00000238497 MLECQ14165 292 aa13.21□□□□□ -0.29
VPS4B-201ENST00000238497 CEP162Q5TB80 1403 aa13.21□□□□□ -0.29
VPS4B-201ENST00000238497 FANCAO15360 1455 aa13.2□□□□□ -0.3
VPS4B-201ENST00000238497 AKNAQ7Z591 1439 aa13.19□□□□□ -0.3
VPS4B-201ENST00000238497 TROQ12816 1431 aaPredicted RBP13.19□□□□□ -0.3
VPS4B-201ENST00000238497 CASKIN1Q8WXD9 1431 aa13.19□□□□□ -0.3
VPS4B-201ENST00000238497 CCER1Q8TC90 406 aaPredicted RBP13.19□□□□□ -0.3
VPS4B-201ENST00000238497 ABCA9Q8IUA7 1624 aa13.18□□□□□ -0.3
VPS4B-201ENST00000238497 MTUS2Q5JR59 1369 aa13.18□□□□□ -0.3
VPS4B-201ENST00000238497 PHLDB1Q86UU1 1377 aa13.18□□□□□ -0.3
VPS4B-201ENST00000238497 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.18□□□□□ -0.3
VPS4B-201ENST00000238497 DENND4BO75064 1496 aaPredicted RBP13.17□□□□□ -0.3
VPS4B-201ENST00000238497 PCF11O94913 1555 aaKnown RBP13.17□□□□□ -0.3
VPS4B-201ENST00000238497 APLP2Q06481 763 aa13.17□□□□□ -0.3
VPS4B-201ENST00000238497 SCAPERQ9BY12 1400 aa13.17□□□□□ -0.3
VPS4B-201ENST00000238497 NEO1Q92859 1461 aa13.17□□□□□ -0.3
VPS4B-201ENST00000238497 ADGRL1O94910 1474 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms