RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 PNNQ9H307 717 aaKnown RBP17.16■□□□□ 0.34
VAMP4-201ENST00000236192 CCER2I3L3R5 266 aa17.15■□□□□ 0.34
VAMP4-201ENST00000236192 IL27Q8NEV9 243 aa17.14■□□□□ 0.33
VAMP4-201ENST00000236192 CDK11BP21127 795 aaKnown RBP17.13■□□□□ 0.33
VAMP4-201ENST00000236192 UPF2Q9HAU5 1272 aaKnown RBP17.11■□□□□ 0.33
VAMP4-201ENST00000236192 FAM50AQ14320 339 aaKnown RBP17.09■□□□□ 0.33
VAMP4-201ENST00000236192 BECN1Q14457 450 aa17.09■□□□□ 0.33
VAMP4-201ENST00000236192 GSE1Q14687 1217 aa17.08■□□□□ 0.32
VAMP4-201ENST00000236192 MRS2Q9HD23 443 aa17.06■□□□□ 0.32
VAMP4-201ENST00000236192 A0A0U1RQG5 324 aaPredicted RBP17.05■□□□□ 0.32
VAMP4-201ENST00000236192 MSH5O43196 834 aa17.02■□□□□ 0.32
VAMP4-201ENST00000236192 TONSLQ96HA7 1378 aa17.02■□□□□ 0.31
VAMP4-201ENST00000236192 ARID4BQ4LE39 1312 aaPredicted RBP16.96■□□□□ 0.3
VAMP4-201ENST00000236192 CEP162Q5TB80 1403 aa16.94■□□□□ 0.3
VAMP4-201ENST00000236192 HIRIP3Q9BW71 556 aaPredicted RBP16.92■□□□□ 0.3
VAMP4-201ENST00000236192 TCERG1O14776 1098 aaKnown RBP16.91■□□□□ 0.3
VAMP4-201ENST00000236192 FAM43AQ8N2R8 423 aa16.91■□□□□ 0.3
VAMP4-201ENST00000236192 CANXP27824 592 aaKnown RBP16.9■□□□□ 0.3
VAMP4-201ENST00000236192 BRPF3Q9ULD4 1205 aa16.87■□□□□ 0.29
VAMP4-201ENST00000236192 EEA1Q15075 1411 aa16.87■□□□□ 0.29
VAMP4-201ENST00000236192 MSNP26038 577 aaKnown RBP16.85■□□□□ 0.29
VAMP4-201ENST00000236192 ZCCHC6Q5VYS8 1495 aaKnown RBP16.85■□□□□ 0.29
VAMP4-201ENST00000236192 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.85■□□□□ 0.29
VAMP4-201ENST00000236192 KCNH8Q96L42 1107 aa16.85■□□□□ 0.29
VAMP4-201ENST00000236192 RRP9O43818 475 aaKnown RBP16.83■□□□□ 0.29
VAMP4-201ENST00000236192 ZMYND15Q9H091 742 aa16.83■□□□□ 0.29
VAMP4-201ENST00000236192 GOLGA6L3A6NEY3 463 aa16.83■□□□□ 0.28
VAMP4-201ENST00000236192 ZNF326Q5BKZ1 582 aaKnown RBP16.83■□□□□ 0.28
VAMP4-201ENST00000236192 TMC1Q8TDI8 760 aa16.83■□□□□ 0.28
VAMP4-201ENST00000236192 AMER1Q5JTC6 1135 aaPredicted RBP16.8■□□□□ 0.28
VAMP4-201ENST00000236192 GOLGA6L22H0YM25 854 aa16.79■□□□□ 0.28
VAMP4-201ENST00000236192 PAK3O75914 559 aaPredicted RBP16.79■□□□□ 0.28
VAMP4-201ENST00000236192 DNTTIP2Q5QJE6 756 aaKnown RBP16.79■□□□□ 0.28
VAMP4-201ENST00000236192 TNIKQ9UKE5 1360 aa16.77■□□□□ 0.28
VAMP4-201ENST00000236192 PDE4CQ08493 712 aa16.73■□□□□ 0.27
VAMP4-201ENST00000236192 FRAT1Q92837 279 aaPredicted RBP16.72■□□□□ 0.27
VAMP4-201ENST00000236192 PTMAP06454 111 aaKnown RBP16.72■□□□□ 0.27
VAMP4-201ENST00000236192 EIF4G2P78344 907 aaKnown RBP eCLIP16.72■□□□□ 0.27
VAMP4-201ENST00000236192 CLIP1P30622 1438 aa16.69■□□□□ 0.26
VAMP4-201ENST00000236192 ARID3AQ99856 593 aa16.69■□□□□ 0.26
VAMP4-201ENST00000236192 PDE4AP27815 886 aa16.68■□□□□ 0.26
VAMP4-201ENST00000236192 NFKBIBQ15653 356 aa16.67■□□□□ 0.26
VAMP4-201ENST00000236192 MYH16Q9H6N6 1097 aa16.67■□□□□ 0.26
VAMP4-201ENST00000236192 TPM2P07951 284 aa16.67■□□□□ 0.26
VAMP4-201ENST00000236192 MAP7D2Q96T17 732 aa16.66■□□□□ 0.26
VAMP4-201ENST00000236192 PLEKHG5O94827 1062 aa16.65■□□□□ 0.26
VAMP4-201ENST00000236192 GOLGA3Q08378 1498 aa16.64■□□□□ 0.25
VAMP4-201ENST00000236192 GZF1Q9H116 711 aaPredicted RBP16.63■□□□□ 0.25
VAMP4-201ENST00000236192 MS4A1P11836 297 aa16.61■□□□□ 0.25
VAMP4-201ENST00000236192 RGS3P49796 1198 aa16.61■□□□□ 0.25
VAMP4-201ENST00000236192 WRNQ14191 1432 aaPredicted RBP eCLIP16.61■□□□□ 0.25
VAMP4-201ENST00000236192 PTMSP20962 102 aa16.61■□□□□ 0.25
VAMP4-201ENST00000236192 NUDCQ9Y266 331 aa16.6■□□□□ 0.25
VAMP4-201ENST00000236192 MTERF4Q7Z6M4 381 aaKnown RBP16.59■□□□□ 0.25
VAMP4-201ENST00000236192 CHAF1AQ13111 956 aaPredicted RBP16.58■□□□□ 0.24
VAMP4-201ENST00000236192 SIN3AQ96ST3 1273 aa16.57■□□□□ 0.24
VAMP4-201ENST00000236192 SLKQ9H2G2 1235 aaPredicted RBP16.56■□□□□ 0.24
VAMP4-201ENST00000236192 TNNT3P45378 269 aaPredicted RBP16.56■□□□□ 0.24
VAMP4-201ENST00000236192 FAM13BQ9NYF5 915 aa16.56■□□□□ 0.24
VAMP4-201ENST00000236192 C11orf95C9JLR9 678 aaPredicted RBP16.55■□□□□ 0.24
VAMP4-201ENST00000236192 SLC4A3P48751 1232 aa16.54■□□□□ 0.24
VAMP4-201ENST00000236192 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.54■□□□□ 0.24
VAMP4-201ENST00000236192 DHX57Q6P158 1386 aaKnown RBP16.53■□□□□ 0.24
VAMP4-201ENST00000236192 ZBED9Q6R2W3 1325 aa16.51■□□□□ 0.23
VAMP4-201ENST00000236192 HSCBQ8IWL3 235 aa16.5■□□□□ 0.23
VAMP4-201ENST00000236192 GBP4Q96PP9 640 aa16.5■□□□□ 0.23
VAMP4-201ENST00000236192 PDCL3Q9H2J4 239 aa16.47■□□□□ 0.23
VAMP4-201ENST00000236192 RCAN3Q9UKA8 241 aa16.47■□□□□ 0.23
VAMP4-201ENST00000236192 SENP3-EIF4A1A0A087X0R7 540 aa16.47■□□□□ 0.23
VAMP4-201ENST00000236192 RBM10P98175 930 aaKnown RBP16.46■□□□□ 0.23
VAMP4-201ENST00000236192 DDX11L8A8MPP1 907 aa16.46■□□□□ 0.22
VAMP4-201ENST00000236192 HSP90AB1P08238 724 aaKnown RBP16.46■□□□□ 0.22
VAMP4-201ENST00000236192 SPRYD3Q8NCJ5 442 aa16.45■□□□□ 0.22
VAMP4-201ENST00000236192 FAM161AQ3B820 660 aa16.44■□□□□ 0.22
VAMP4-201ENST00000236192 MRE11P49959 708 aa16.44■□□□□ 0.22
VAMP4-201ENST00000236192 WDR43Q15061 677 aaKnown RBP eCLIP16.44■□□□□ 0.22
VAMP4-201ENST00000236192 KIAA2012Q0VF49 1180 aa16.43■□□□□ 0.22
VAMP4-201ENST00000236192 ZNF771Q7L3S4 317 aaPredicted RBP16.43■□□□□ 0.22
VAMP4-201ENST00000236192 CSPP1Q1MSJ5 1256 aa16.42■□□□□ 0.22
VAMP4-201ENST00000236192 RSF1Q96T23 1441 aaPredicted RBP16.42■□□□□ 0.22
VAMP4-201ENST00000236192 CCNB3Q8WWL7 1395 aa16.41■□□□□ 0.22
VAMP4-201ENST00000236192 FRAT2O75474 233 aaPredicted RBP16.4■□□□□ 0.22
VAMP4-201ENST00000236192 WASHC2AQ641Q2 1341 aa16.4■□□□□ 0.22
VAMP4-201ENST00000236192 PDIA4P13667 645 aaKnown RBP16.39■□□□□ 0.21
VAMP4-201ENST00000236192 PPP1R15AO75807 674 aaPredicted RBP16.38■□□□□ 0.21
VAMP4-201ENST00000236192 CEP164Q9UPV0 1460 aa16.37■□□□□ 0.21
VAMP4-201ENST00000236192 VPS8Q8N3P4 1428 aa16.37■□□□□ 0.21
VAMP4-201ENST00000236192 SKOR2Q2VWA4 1001 aaPredicted RBP16.36■□□□□ 0.21
VAMP4-201ENST00000236192 SLC4A1APQ9BWU0 796 aaKnown RBP16.36■□□□□ 0.21
VAMP4-201ENST00000236192 RB1CC1Q8TDY2 1594 aa16.36■□□□□ 0.21
VAMP4-201ENST00000236192 SETD5Q9C0A6 1442 aa16.36■□□□□ 0.21
VAMP4-201ENST00000236192 WASHC2CQ9Y4E1 1318 aa16.35■□□□□ 0.21
VAMP4-201ENST00000236192 HSPA5P11021 654 aaKnown RBP16.35■□□□□ 0.21
VAMP4-201ENST00000236192 TAF3Q5VWG9 929 aa16.35■□□□□ 0.21
VAMP4-201ENST00000236192 APPP05067 770 aa16.34■□□□□ 0.21
VAMP4-201ENST00000236192 BBXQ8WY36 941 aaPredicted RBP16.34■□□□□ 0.21
VAMP4-201ENST00000236192 R3HCC1Q9Y3T6 440 aaKnown RBP16.34■□□□□ 0.21
VAMP4-201ENST00000236192 EXOC6Q8TAG9 804 aa16.33■□□□□ 0.21
VAMP4-201ENST00000236192 RRP1P56182 461 aaKnown RBP16.33■□□□□ 0.2
VAMP4-201ENST00000236192 BACH2Q9BYV9 841 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms