RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 KANK4Q5T7N3 995 aaPredicted RBP33.27■■■□□ 2.92
CCDC9-201ENST00000221922 HNRNPUL2Q1KMD3 747 aaKnown RBP33.27■■■□□ 2.92
CCDC9-201ENST00000221922 FHAD1B1AJZ9 1412 aa33.26■■■□□ 2.92
CCDC9-201ENST00000221922 TIAM1Q13009 1591 aa33.23■■■□□ 2.91
CCDC9-201ENST00000221922 DIEXFQ68CQ4 756 aaKnown RBP33.21■■■□□ 2.91
CCDC9-201ENST00000221922 PBRM1Q86U86 1689 aa33.21■■■□□ 2.91
CCDC9-201ENST00000221922 WDR62O43379 1518 aa33.21■■■□□ 2.91
CCDC9-201ENST00000221922 RRBP1Q9P2E9 1410 aaKnown RBP33.16■■■□□ 2.9
CCDC9-201ENST00000221922 PCF11O94913 1555 aaKnown RBP33.15■■■□□ 2.9
CCDC9-201ENST00000221922 CFAP43Q8NDM7 1665 aa33.14■■■□□ 2.9
CCDC9-201ENST00000221922 AQRO60306 1485 aaKnown RBP eCLIP33.12■■■□□ 2.892e-6■■■■■ 29.2
CCDC9-201ENST00000221922 FHOD3Q2V2M9 1422 aa33.11■■■□□ 2.89
CCDC9-201ENST00000221922 IFT140Q96RY7 1462 aa33.1■■■□□ 2.89
CCDC9-201ENST00000221922 SAMD9Q5K651 1589 aa33.09■■■□□ 2.89
CCDC9-201ENST00000221922 FYCO1Q9BQS8 1478 aa33.09■■■□□ 2.89
CCDC9-201ENST00000221922 ADAMTS12P58397 1594 aa33.06■■■□□ 2.88
CCDC9-201ENST00000221922 LRRC9Q6ZRR7 1453 aa33.05■■■□□ 2.88
CCDC9-201ENST00000221922 CASKIN1Q8WXD9 1431 aa33.04■■■□□ 2.88
CCDC9-201ENST00000221922 GRIN2BQ13224 1484 aa33.03■■■□□ 2.88
CCDC9-201ENST00000221922 ACIN1Q9UKV3 1341 aaKnown RBP33.02■■■□□ 2.88
CCDC9-201ENST00000221922 P3H3Q8IVL6 736 aa33.01■■■□□ 2.88
CCDC9-201ENST00000221922 FMN1Q68DA7 1419 aa33.01■■■□□ 2.88
CCDC9-201ENST00000221922 ZNF316A6NFI3 1004 aaPredicted RBP33.01■■■□□ 2.87
CCDC9-201ENST00000221922 CCNB3Q8WWL7 1395 aa32.97■■■□□ 2.87
CCDC9-201ENST00000221922 ERCC6Q03468 1493 aa32.95■■■□□ 2.86
CCDC9-201ENST00000221922 THOC2Q8NI27 1593 aaKnown RBP32.94■■■□□ 2.86
CCDC9-201ENST00000221922 SNAPC4Q5SXM2 1469 aa32.93■■■□□ 2.86
CCDC9-201ENST00000221922 ZNF608Q9ULD9 1512 aaPredicted RBP32.91■■■□□ 2.86
CCDC9-201ENST00000221922 NEUROD1Q13562 356 aa32.9■■■□□ 2.86
CCDC9-201ENST00000221922 CLSPNQ9HAW4 1339 aa32.87■■■□□ 2.85
CCDC9-201ENST00000221922 IQGAP2Q13576 1575 aa32.86■■■□□ 2.85
CCDC9-201ENST00000221922 EIF4G3O43432 1585 aaKnown RBP32.84■■■□□ 2.85
CCDC9-201ENST00000221922 CENPBP07199 599 aaPredicted RBP32.83■■■□□ 2.85
CCDC9-201ENST00000221922 PELP1Q8IZL8 1130 aaKnown RBP32.82■■■□□ 2.85
CCDC9-201ENST00000221922 PHLDB1Q86UU1 1377 aa32.79■■■□□ 2.84
CCDC9-201ENST00000221922 ATP1B4Q9UN42 357 aaPredicted RBP32.76■■■□□ 2.84
CCDC9-201ENST00000221922 DHX57Q6P158 1386 aaKnown RBP32.76■■■□□ 2.83
CCDC9-201ENST00000221922 LRRIQ1Q96JM4 1722 aa32.75■■■□□ 2.83
CCDC9-201ENST00000221922 UGGT2Q9NYU1 1516 aa32.71■■■□□ 2.83
CCDC9-201ENST00000221922 MAGI1Q96QZ7 1491 aaPredicted RBP32.67■■■□□ 2.82
CCDC9-201ENST00000221922 GRIN2AQ12879 1464 aa32.65■■■□□ 2.82
CCDC9-201ENST00000221922 KIAA0586Q9BVV6 1533 aa32.65■■■□□ 2.82
CCDC9-201ENST00000221922 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.63■■■□□ 2.81
CCDC9-201ENST00000221922 HECW1Q76N89 1606 aa32.61■■■□□ 2.81
CCDC9-201ENST00000221922 CCDC18Q5T9S5 1454 aa32.61■■■□□ 2.81
CCDC9-201ENST00000221922 MTUS2Q5JR59 1369 aa32.59■■■□□ 2.81
CCDC9-201ENST00000221922 EHBP1L1Q8N3D4 1523 aa32.58■■■□□ 2.81
CCDC9-201ENST00000221922 GTF3C3Q9Y5Q9 886 aa32.55■■■□□ 2.8
CCDC9-201ENST00000221922 SYNJ2O15056 1496 aa32.54■■■□□ 2.8
CCDC9-201ENST00000221922 SUPT6HQ7KZ85 1726 aaKnown RBP32.53■■■□□ 2.8
CCDC9-201ENST00000221922 KIAA0556O60303 1618 aa32.52■■■□□ 2.8
CCDC9-201ENST00000221922 ITGAEP38570 1179 aa32.52■■■□□ 2.8
CCDC9-201ENST00000221922 FGD6Q6ZV73 1430 aa32.51■■■□□ 2.8
CCDC9-201ENST00000221922 DISP1Q96F81 1524 aa32.49■■■□□ 2.79
CCDC9-201ENST00000221922 FAM50AQ14320 339 aaKnown RBP32.48■■■□□ 2.79
CCDC9-201ENST00000221922 NCOA2Q15596 1464 aa32.48■■■□□ 2.79
CCDC9-201ENST00000221922 RAB3GAP2Q9H2M9 1393 aa32.48■■■□□ 2.79
CCDC9-201ENST00000221922 SETD5Q9C0A6 1442 aa32.47■■■□□ 2.79
CCDC9-201ENST00000221922 MIER1Q8N108 512 aa32.47■■■□□ 2.79
CCDC9-201ENST00000221922 EPRSP07814 1512 aaKnown RBP32.45■■■□□ 2.79
CCDC9-201ENST00000221922 ARHGEF11O15085 1522 aa32.45■■■□□ 2.78
CCDC9-201ENST00000221922 CEP170Q5SW79 1584 aa32.44■■■□□ 2.78
CCDC9-201ENST00000221922 MAGI3Q5TCQ9 1506 aa32.44■■■□□ 2.78
CCDC9-201ENST00000221922 MYOM3Q5VTT5 1437 aa32.41■■■□□ 2.78
CCDC9-201ENST00000221922 CHMP7Q8WUX9 453 aaPredicted RBP32.38■■■□□ 2.77
CCDC9-201ENST00000221922 NUP160Q12769 1436 aa32.37■■■□□ 2.77
CCDC9-201ENST00000221922 CDK13Q14004 1512 aaKnown RBP32.32■■■□□ 2.77
CCDC9-201ENST00000221922 RAPGEF6Q8TEU7 1601 aa32.3■■■□□ 2.76
CCDC9-201ENST00000221922 MAPKBP1O60336 1514 aa32.29■■■□□ 2.76
CCDC9-201ENST00000221922 PTPN23Q9H3S7 1636 aa32.28■■■□□ 2.76
CCDC9-201ENST00000221922 YTHDC1Q96MU7 727 aaKnown RBP32.25■■■□□ 2.75
CCDC9-201ENST00000221922 NUP153P49790 1475 aaKnown RBP32.24■■■□□ 2.75
CCDC9-201ENST00000221922 TCOF1Q13428 1488 aaKnown RBP32.24■■■□□ 2.75
CCDC9-201ENST00000221922 FBLN2P98095 1184 aa32.19■■■□□ 2.74
CCDC9-201ENST00000221922 CARMIL2Q6F5E8 1435 aa32.19■■■□□ 2.74
CCDC9-201ENST00000221922 HFM1A2PYH4 1435 aa32.18■■■□□ 2.74
CCDC9-201ENST00000221922 PTPRKQ15262 1439 aa32.18■■■□□ 2.74
CCDC9-201ENST00000221922 MIA2Q96PC5 1412 aa32.17■■■□□ 2.74
CCDC9-201ENST00000221922 JPH4Q96JJ6 628 aa32.12■■■□□ 2.73
CCDC9-201ENST00000221922 NAIPQ13075 1403 aa32.06■■■□□ 2.72
CCDC9-201ENST00000221922 PLB1Q6P1J6 1458 aa32.05■■■□□ 2.72
CCDC9-201ENST00000221922 CDK11AQ9UQ88 783 aaPredicted RBP32.04■■■□□ 2.72
CCDC9-201ENST00000221922 ARID3CA6NKF2 412 aa32.04■■■□□ 2.72
CCDC9-201ENST00000221922 AKNAQ7Z591 1439 aa32.02■■■□□ 2.72
CCDC9-201ENST00000221922 TIMELESSQ9UNS1 1208 aa32.01■■■□□ 2.72
CCDC9-201ENST00000221922 GCC2Q8IWJ2 1684 aa32.01■■■□□ 2.71
CCDC9-201ENST00000221922 TROQ12816 1431 aaPredicted RBP31.99■■■□□ 2.71
CCDC9-201ENST00000221922 ABCA8O94911 1581 aa31.99■■■□□ 2.71
CCDC9-201ENST00000221922 CHD1O14646 1710 aa31.99■■■□□ 2.71
CCDC9-201ENST00000221922 UACAQ9BZF9 1416 aa31.99■■■□□ 2.71
CCDC9-201ENST00000221922 ADCY10Q96PN6 1610 aa31.98■■■□□ 2.71
CCDC9-201ENST00000221922 ITSN2Q9NZM3 1697 aa31.91■■■□□ 2.7
CCDC9-201ENST00000221922 PRG4Q92954 1404 aaPredicted RBP31.9■■■□□ 2.7
CCDC9-201ENST00000221922 DNMT1P26358 1616 aaKnown RBP31.89■■■□□ 2.7
CCDC9-201ENST00000221922 SIN3AQ96ST3 1273 aa31.88■■■□□ 2.69
CCDC9-201ENST00000221922 SHROOM2Q13796 1616 aa31.85■■■□□ 2.69
CCDC9-201ENST00000221922 KIF14Q15058 1648 aa31.83■■■□□ 2.69
CCDC9-201ENST00000221922 DAPK1P53355 1430 aa31.83■■■□□ 2.69
CCDC9-201ENST00000221922 ROCK1Q13464 1354 aa31.81■■■□□ 2.68
CCDC9-201ENST00000221922 ATP10BO94823 1461 aa31.79■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms