RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 ZNF316A6NFI3 1004 aaPredicted RBP18.94■□□□□ 0.62
SIX4-201ENST00000216513 RGL3Q3MIN7 710 aa18.91■□□□□ 0.62
SIX4-201ENST00000216513 NPM2Q86SE8 214 aaKnown RBP18.9■□□□□ 0.62
SIX4-201ENST00000216513 SENP3-EIF4A1A0A087X0R7 540 aa18.9■□□□□ 0.62
SIX4-201ENST00000216513 TONSLQ96HA7 1378 aa18.9■□□□□ 0.62
SIX4-201ENST00000216513 TDRD9Q8NDG6 1382 aaKnown RBP18.88■□□□□ 0.61
SIX4-201ENST00000216513 SALL2Q9Y467 1007 aaPredicted RBP18.87■□□□□ 0.61
SIX4-201ENST00000216513 CUX2O14529 1486 aa18.87■□□□□ 0.61
SIX4-201ENST00000216513 OSCARQ8IYS5 282 aa18.85■□□□□ 0.61
SIX4-201ENST00000216513 CLIP1P30622 1438 aa18.84■□□□□ 0.61
SIX4-201ENST00000216513 SMARCA2P51531 1590 aa18.83■□□□□ 0.6
SIX4-201ENST00000216513 GGT6Q6P531 493 aa18.82■□□□□ 0.6
SIX4-201ENST00000216513 TMC1Q8TDI8 760 aa18.82■□□□□ 0.6
SIX4-201ENST00000216513 HIRIP3Q9BW71 556 aaPredicted RBP18.82■□□□□ 0.6
SIX4-201ENST00000216513 SOGA1O94964 1423 aa18.81■□□□□ 0.6
SIX4-201ENST00000216513 ARXQ96QS3 562 aa18.8■□□□□ 0.6
SIX4-201ENST00000216513 CARMIL1Q5VZK9 1371 aa18.76■□□□□ 0.59
SIX4-201ENST00000216513 CARMIL2Q6F5E8 1435 aa18.76■□□□□ 0.59
SIX4-201ENST00000216513 POGKQ9P215 609 aa18.75■□□□□ 0.59
SIX4-201ENST00000216513 RTL5Q5HYW3 569 aaPredicted RBP18.74■□□□□ 0.59
SIX4-201ENST00000216513 DCAF1Q9Y4B6 1507 aa18.7■□□□□ 0.58
SIX4-201ENST00000216513 CCNB3Q8WWL7 1395 aa18.7■□□□□ 0.58
SIX4-201ENST00000216513 CEP164Q9UPV0 1460 aa18.69■□□□□ 0.58
SIX4-201ENST00000216513 PPM1GO15355 546 aaPredicted RBP18.69■□□□□ 0.58
SIX4-201ENST00000216513 GOLGA3Q08378 1498 aa18.68■□□□□ 0.58
SIX4-201ENST00000216513 CADPSQ9ULU8 1353 aa18.67■□□□□ 0.58
SIX4-201ENST00000216513 HDGFP51858 240 aaKnown RBP18.67■□□□□ 0.58
SIX4-201ENST00000216513 KANK1Q14678 1352 aa18.64■□□□□ 0.57
SIX4-201ENST00000216513 NPHP1O15259 732 aa18.64■□□□□ 0.57
SIX4-201ENST00000216513 MROH2BQ7Z745 1585 aa18.63■□□□□ 0.57
SIX4-201ENST00000216513 IRX6P78412 446 aaPredicted RBP18.62■□□□□ 0.57
SIX4-201ENST00000216513 FAM9BQ8IZU0 186 aa18.61■□□□□ 0.57
SIX4-201ENST00000216513 DDX10Q13206 875 aaKnown RBP18.6■□□□□ 0.57
SIX4-201ENST00000216513 CCDC88BA6NC98 1476 aa18.6■□□□□ 0.57
SIX4-201ENST00000216513 SOX12O15370 315 aa18.6■□□□□ 0.57
SIX4-201ENST00000216513 CCDC9Q9Y3X0 531 aaKnown RBP18.59■□□□□ 0.57
SIX4-201ENST00000216513 EEA1Q15075 1411 aa18.57■□□□□ 0.56
SIX4-201ENST00000216513 SAFB2Q14151 953 aaKnown RBP eCLIP18.57■□□□□ 0.56
SIX4-201ENST00000216513 JPH4Q96JJ6 628 aa18.57■□□□□ 0.56
SIX4-201ENST00000216513 WDR43Q15061 677 aaKnown RBP eCLIP18.57■□□□□ 0.56
SIX4-201ENST00000216513 EFCAB2Q5VUJ9 269 aa18.55■□□□□ 0.56
SIX4-201ENST00000216513 FKBP8Q14318 412 aa18.55■□□□□ 0.56
SIX4-201ENST00000216513 FAM69CQ0P6D2 419 aa18.54■□□□□ 0.56
SIX4-201ENST00000216513 STK26Q9P289 416 aa18.53■□□□□ 0.56
SIX4-201ENST00000216513 FANCD2Q9BXW9 1451 aa18.5■□□□□ 0.55
SIX4-201ENST00000216513 CEP162Q5TB80 1403 aa18.49■□□□□ 0.55
SIX4-201ENST00000216513 PAK3O75914 559 aaPredicted RBP18.49■□□□□ 0.55
SIX4-201ENST00000216513 ATAD2BQ9ULI0 1458 aa18.49■□□□□ 0.55
SIX4-201ENST00000216513 ACIN1Q9UKV3 1341 aaKnown RBP18.47■□□□□ 0.55
SIX4-201ENST00000216513 EID1Q9Y6B2 187 aa18.46■□□□□ 0.55
SIX4-201ENST00000216513 KIF3BO15066 747 aa18.45■□□□□ 0.54
SIX4-201ENST00000216513 HNRNPUQ00839 825 aaKnown RBP eCLIP18.45■□□□□ 0.54
SIX4-201ENST00000216513 ABCC8Q09428 1581 aa18.43■□□□□ 0.54
SIX4-201ENST00000216513 TNNT2P45379 298 aaPredicted RBP18.43■□□□□ 0.54
SIX4-201ENST00000216513 SRPK2P78362 688 aaKnown RBP18.43■□□□□ 0.54
SIX4-201ENST00000216513 WIZO95785 1651 aa18.42■□□□□ 0.54
SIX4-201ENST00000216513 NUTM2DQ5VT03 806 aaPredicted RBP18.42■□□□□ 0.54
SIX4-201ENST00000216513 FHAD1B1AJZ9 1412 aa18.41■□□□□ 0.54
SIX4-201ENST00000216513 CARD11Q9BXL7 1154 aa18.4■□□□□ 0.54
SIX4-201ENST00000216513 HNRNPMP52272 730 aaKnown RBP eCLIP18.4■□□□□ 0.54
SIX4-201ENST00000216513 WASHC2CQ9Y4E1 1318 aa18.39■□□□□ 0.54
SIX4-201ENST00000216513 CSB-PGBD3P0DP91 1061 aa18.39■□□□□ 0.53
SIX4-201ENST00000216513 SPAG9O60271 1321 aaKnown RBP18.36■□□□□ 0.53
SIX4-201ENST00000216513 PTPRGP23470 1445 aa18.36■□□□□ 0.53
SIX4-201ENST00000216513 MYO15BQ96JP2 1530 aa18.35■□□□□ 0.53
SIX4-201ENST00000216513 NBR1Q14596 966 aa18.35■□□□□ 0.53
SIX4-201ENST00000216513 CFAP53Q96M91 514 aa18.35■□□□□ 0.53
SIX4-201ENST00000216513 EIF4G2P78344 907 aaKnown RBP eCLIP18.35■□□□□ 0.53
SIX4-201ENST00000216513 CDCA8Q53HL2 280 aa18.35■□□□□ 0.53
SIX4-201ENST00000216513 PHF23Q9BUL5 403 aaPredicted RBP18.34■□□□□ 0.53
SIX4-201ENST00000216513 MEX3CQ5U5Q3 659 aaKnown RBP18.34■□□□□ 0.53
SIX4-201ENST00000216513 KNSTRNQ9Y448 316 aa18.34■□□□□ 0.53
SIX4-201ENST00000216513 DCAF11Q8TEB1 546 aa18.34■□□□□ 0.53
SIX4-201ENST00000216513 DNAJC5BQ9UF47 199 aa18.33■□□□□ 0.53
SIX4-201ENST00000216513 LAS1LQ9Y4W2 734 aaKnown RBP18.33■□□□□ 0.53
SIX4-201ENST00000216513 TOP2AP11388 1531 aaKnown RBP18.31■□□□□ 0.52
SIX4-201ENST00000216513 MIER1Q8N108 512 aa18.3■□□□□ 0.52
SIX4-201ENST00000216513 NUTM2FA1L443 756 aa18.3■□□□□ 0.52
SIX4-201ENST00000216513 TNIKQ9UKE5 1360 aa18.29■□□□□ 0.52
SIX4-201ENST00000216513 SMARCA4P51532 1647 aa18.29■□□□□ 0.52
SIX4-201ENST00000216513 NEUROD2Q15784 382 aa18.26■□□□□ 0.51
SIX4-201ENST00000216513 MRS2Q9HD23 443 aa18.25■□□□□ 0.51
SIX4-201ENST00000216513 U2SURPO15042 1029 aaKnown RBP18.24■□□□□ 0.51
SIX4-201ENST00000216513 AQRO60306 1485 aaKnown RBP eCLIP18.24■□□□□ 0.51
SIX4-201ENST00000216513 MAPK8IP3Q9UPT6 1336 aa18.22■□□□□ 0.51
SIX4-201ENST00000216513 PKD2Q13563 968 aa18.21■□□□□ 0.51
SIX4-201ENST00000216513 CC2D2AQ9P2K1 1620 aa18.21■□□□□ 0.51
SIX4-201ENST00000216513 FHOD3Q2V2M9 1422 aa18.21■□□□□ 0.51
SIX4-201ENST00000216513 ZNF330Q9Y3S2 320 aaPredicted RBP18.21■□□□□ 0.51
SIX4-201ENST00000216513 MYH16Q9H6N6 1097 aa18.2■□□□□ 0.5
SIX4-201ENST00000216513 ANP32AP39687 249 aaKnown RBP18.2■□□□□ 0.5
SIX4-201ENST00000216513 FOXD1Q16676 465 aa18.2■□□□□ 0.5
SIX4-201ENST00000216513 NUDCQ9Y266 331 aa18.19■□□□□ 0.5
SIX4-201ENST00000216513 FMN1Q68DA7 1419 aa18.19■□□□□ 0.5
SIX4-201ENST00000216513 RAD54L2Q9Y4B4 1467 aa18.19■□□□□ 0.5
SIX4-201ENST00000216513 TPRNQ4KMQ1 711 aa18.18■□□□□ 0.5
SIX4-201ENST00000216513 RAPGEF2Q9Y4G8 1499 aa18.18■□□□□ 0.5
SIX4-201ENST00000216513 NGDNQ8NEJ9 315 aaKnown RBP18.18■□□□□ 0.5
SIX4-201ENST00000216513 CC2D1BQ5T0F9 858 aaKnown RBP18.16■□□□□ 0.5
SIX4-201ENST00000216513 GAPVD1Q14C86 1478 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms