RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 PCGF6Q9BYE7 350 aa30.81■■■□□ 2.52
TNFRSF1A-201ENST00000162749 TRIM26Q12899 539 aaPredicted RBP30.78■■■□□ 2.52
TNFRSF1A-201ENST00000162749 PPARGC1BQ86YN6 1023 aaKnown RBP30.78■■■□□ 2.52
TNFRSF1A-201ENST00000162749 MAGI1Q96QZ7 1491 aaPredicted RBP30.77■■■□□ 2.52
TNFRSF1A-201ENST00000162749 EFCAB5A4FU69 1503 aa30.71■■■□□ 2.51
TNFRSF1A-201ENST00000162749 GRIN2AQ12879 1464 aa30.68■■■□□ 2.5
TNFRSF1A-201ENST00000162749 SYNJ2O15056 1496 aa30.66■■■□□ 2.5
TNFRSF1A-201ENST00000162749 IQGAP2Q13576 1575 aa30.63■■■□□ 2.49
TNFRSF1A-201ENST00000162749 SAMD9Q5K651 1589 aa30.63■■■□□ 2.49
TNFRSF1A-201ENST00000162749 FHOD3Q2V2M9 1422 aa30.57■■■□□ 2.48
TNFRSF1A-201ENST00000162749 P3H3Q8IVL6 736 aa30.56■■■□□ 2.48
TNFRSF1A-201ENST00000162749 CHMP7Q8WUX9 453 aaPredicted RBP30.55■■■□□ 2.48
TNFRSF1A-201ENST00000162749 TTBK1Q5TCY1 1321 aaPredicted RBP30.54■■■□□ 2.48
TNFRSF1A-201ENST00000162749 HRCP23327 699 aa30.54■■■□□ 2.48
TNFRSF1A-201ENST00000162749 APLP2Q06481 763 aa30.54■■■□□ 2.48
TNFRSF1A-201ENST00000162749 KIAA0586Q9BVV6 1533 aa30.52■■■□□ 2.48
TNFRSF1A-201ENST00000162749 CEP170Q5SW79 1584 aa30.51■■■□□ 2.47
TNFRSF1A-201ENST00000162749 FBLN2P98095 1184 aa30.47■■■□□ 2.47
TNFRSF1A-201ENST00000162749 PCF11O94913 1555 aaKnown RBP30.47■■■□□ 2.47
TNFRSF1A-201ENST00000162749 UGGT2Q9NYU1 1516 aa30.46■■■□□ 2.47
TNFRSF1A-201ENST00000162749 NUP160Q12769 1436 aa30.43■■■□□ 2.46
TNFRSF1A-201ENST00000162749 FMN1Q68DA7 1419 aa30.41■■■□□ 2.46
TNFRSF1A-201ENST00000162749 CHD1O14646 1710 aa30.4■■■□□ 2.46
TNFRSF1A-201ENST00000162749 FYCO1Q9BQS8 1478 aa30.38■■■□□ 2.45
TNFRSF1A-201ENST00000162749 TIAM1Q13009 1591 aa30.36■■■□□ 2.45
TNFRSF1A-201ENST00000162749 MAP3K1Q13233 1512 aa30.36■■■□□ 2.45
TNFRSF1A-201ENST00000162749 CASKIN1Q8WXD9 1431 aa30.36■■■□□ 2.45
TNFRSF1A-201ENST00000162749 KANK4Q5T7N3 995 aaPredicted RBP30.33■■■□□ 2.45
TNFRSF1A-201ENST00000162749 KIAA0556O60303 1618 aa30.33■■■□□ 2.45
TNFRSF1A-201ENST00000162749 CFAP43Q8NDM7 1665 aa30.32■■■□□ 2.44
TNFRSF1A-201ENST00000162749 DISP1Q96F81 1524 aa30.32■■■□□ 2.44
TNFRSF1A-201ENST00000162749 LRRIQ1Q96JM4 1722 aa30.26■■■□□ 2.43
TNFRSF1A-201ENST00000162749 ATP1B4Q9UN42 357 aaPredicted RBP30.22■■■□□ 2.43
TNFRSF1A-201ENST00000162749 LRRC9Q6ZRR7 1453 aa30.2■■■□□ 2.42
TNFRSF1A-201ENST00000162749 JPH4Q96JJ6 628 aa30.18■■■□□ 2.42
TNFRSF1A-201ENST00000162749 HECW1Q76N89 1606 aa30.13■■■□□ 2.41
TNFRSF1A-201ENST00000162749 CARMIL2Q6F5E8 1435 aa30.11■■■□□ 2.41
TNFRSF1A-201ENST00000162749 SHROOM2Q13796 1616 aa30.06■■■□□ 2.4
TNFRSF1A-201ENST00000162749 CCDC18Q5T9S5 1454 aa30.05■■■□□ 2.4
TNFRSF1A-201ENST00000162749 RAPGEF6Q8TEU7 1601 aa30.03■■■□□ 2.4
TNFRSF1A-201ENST00000162749 EPRSP07814 1512 aaKnown RBP30.02■■■□□ 2.4
TNFRSF1A-201ENST00000162749 PRG4Q92954 1404 aaPredicted RBP30■■■□□ 2.39
TNFRSF1A-201ENST00000162749 RRBP1Q9P2E9 1410 aaKnown RBP30■■■□□ 2.39
TNFRSF1A-201ENST00000162749 CLASP1Q7Z460 1538 aa29.99■■■□□ 2.39
TNFRSF1A-201ENST00000162749 CDK13Q14004 1512 aaKnown RBP29.95■■■□□ 2.39
TNFRSF1A-201ENST00000162749 NUP153P49790 1475 aaKnown RBP29.95■■■□□ 2.39
TNFRSF1A-201ENST00000162749 MTUS2Q5JR59 1369 aa29.95■■■□□ 2.38
TNFRSF1A-201ENST00000162749 PLB1Q6P1J6 1458 aa29.93■■■□□ 2.38
TNFRSF1A-201ENST00000162749 PHLDB1Q86UU1 1377 aa29.93■■■□□ 2.38
TNFRSF1A-201ENST00000162749 MAGI3Q5TCQ9 1506 aa29.93■■■□□ 2.38
TNFRSF1A-201ENST00000162749 EHBP1L1Q8N3D4 1523 aa29.93■■■□□ 2.38
TNFRSF1A-201ENST00000162749 CCNB3Q8WWL7 1395 aa29.89■■■□□ 2.38
TNFRSF1A-201ENST00000162749 SUPT6HQ7KZ85 1726 aaKnown RBP29.88■■■□□ 2.37
TNFRSF1A-201ENST00000162749 ABCA8O94911 1581 aa29.86■■■□□ 2.37
TNFRSF1A-201ENST00000162749 ERCC6L2Q5T890 1561 aa29.86■■■□□ 2.37
TNFRSF1A-201ENST00000162749 ARID3CA6NKF2 412 aa29.85■■■□□ 2.37
TNFRSF1A-201ENST00000162749 HNRNPUL2Q1KMD3 747 aaKnown RBP29.84■■■□□ 2.37
TNFRSF1A-201ENST00000162749 NCOA2Q15596 1464 aa29.81■■■□□ 2.36
TNFRSF1A-201ENST00000162749 PTPRGP23470 1445 aa29.8■■■□□ 2.36
TNFRSF1A-201ENST00000162749 ARHGEF11O15085 1522 aa29.78■■■□□ 2.36
TNFRSF1A-201ENST00000162749 FGD6Q6ZV73 1430 aa29.71■■■□□ 2.35
TNFRSF1A-201ENST00000162749 MYOM3Q5VTT5 1437 aa29.7■■■□□ 2.34
TNFRSF1A-201ENST00000162749 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.69■■■□□ 2.34
TNFRSF1A-201ENST00000162749 CDK11AQ9UQ88 783 aaPredicted RBP29.67■■■□□ 2.34
TNFRSF1A-201ENST00000162749 ATP10BO94823 1461 aa29.66■■■□□ 2.34
TNFRSF1A-201ENST00000162749 UACAQ9BZF9 1416 aa29.65■■■□□ 2.34
TNFRSF1A-201ENST00000162749 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.63■■■□□ 2.33
TNFRSF1A-201ENST00000162749 FAM50AQ14320 339 aaKnown RBP29.63■■■□□ 2.33
TNFRSF1A-201ENST00000162749 TROQ12816 1431 aaPredicted RBP29.62■■■□□ 2.33
TNFRSF1A-201ENST00000162749 OSCARQ8IYS5 282 aa29.61■■■□□ 2.33
TNFRSF1A-201ENST00000162749 ADCY10Q96PN6 1610 aa29.6■■■□□ 2.33
TNFRSF1A-201ENST00000162749 ABCC2Q92887 1545 aa29.59■■■□□ 2.33
TNFRSF1A-201ENST00000162749 ITGAEP38570 1179 aa29.59■■■□□ 2.33
TNFRSF1A-201ENST00000162749 PTPN23Q9H3S7 1636 aa29.58■■■□□ 2.33
TNFRSF1A-201ENST00000162749 KIF14Q15058 1648 aa29.56■■■□□ 2.32
TNFRSF1A-201ENST00000162749 CCER1Q8TC90 406 aaPredicted RBP29.55■■■□□ 2.32
TNFRSF1A-201ENST00000162749 ZEB1P37275 1124 aaPredicted RBP29.53■■■□□ 2.32
TNFRSF1A-201ENST00000162749 MIA2Q96PC5 1412 aa29.51■■■□□ 2.31
TNFRSF1A-201ENST00000162749 PLEKHD1A6NEE1 506 aa29.49■■■□□ 2.31
TNFRSF1A-201ENST00000162749 TCOF1Q13428 1488 aaKnown RBP29.49■■■□□ 2.31
TNFRSF1A-201ENST00000162749 UHRF1BP1LA0JNW5 1464 aa29.48■■■□□ 2.31
TNFRSF1A-201ENST00000162749 ITSN2Q9NZM3 1697 aa29.46■■■□□ 2.31
TNFRSF1A-201ENST00000162749 ZCCHC11Q5TAX3 1644 aaKnown RBP29.42■■■□□ 2.3
TNFRSF1A-201ENST00000162749 CDC42BPAQ5VT25 1732 aa29.4■■■□□ 2.3
TNFRSF1A-201ENST00000162749 KDM5BQ9UGL1 1544 aa29.4■■■□□ 2.3
TNFRSF1A-201ENST00000162749 ABCC10Q5T3U5 1492 aa29.39■■■□□ 2.3
TNFRSF1A-201ENST00000162749 GPATCH8Q9UKJ3 1502 aaKnown RBP29.39■■■□□ 2.3
TNFRSF1A-201ENST00000162749 PTPRKQ15262 1439 aa29.39■■■□□ 2.3
TNFRSF1A-201ENST00000162749 SETD5Q9C0A6 1442 aa29.34■■■□□ 2.29
TNFRSF1A-201ENST00000162749 RAB3GAP2Q9H2M9 1393 aa29.34■■■□□ 2.29
TNFRSF1A-201ENST00000162749 CFDP1Q9UEE9 299 aaPredicted RBP29.29■■■□□ 2.28
TNFRSF1A-201ENST00000162749 ZNF644Q9H582 1327 aaPredicted RBP29.28■■■□□ 2.28
TNFRSF1A-201ENST00000162749 CAMSAP2Q08AD1 1489 aa29.27■■■□□ 2.28
TNFRSF1A-201ENST00000162749 DNMT1P26358 1616 aaKnown RBP29.27■■■□□ 2.28
TNFRSF1A-201ENST00000162749 DHX57Q6P158 1386 aaKnown RBP29.26■■■□□ 2.27
TNFRSF1A-201ENST00000162749 HFM1A2PYH4 1435 aa29.25■■■□□ 2.27
TNFRSF1A-201ENST00000162749 TTC37Q6PGP7 1564 aa29.25■■■□□ 2.27
TNFRSF1A-201ENST00000162749 CDC42BPBQ9Y5S2 1711 aa29.24■■■□□ 2.27
TNFRSF1A-201ENST00000162749 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.23■■■□□ 2.27
TNFRSF1A-201ENST00000162749 PREX2Q70Z35 1606 aa29.23■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms