RNA–Protein interactions for RNA: ENSMUST00000213114.1

Ldlr-202, Transcript of Low-density lipoprotein receptor, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ldlr, Length 4,318 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ldlr-202ENSMUST00000213114 Gm13697A2AK42 830 aa13.04□□□□□ -0.32
Ldlr-202ENSMUST00000213114 Synj1Q8CHC4 1574 aa13.04□□□□□ -0.32
Ldlr-202ENSMUST00000213114 Ccdc18Q640L5 1455 aa13.03□□□□□ -0.32
Ldlr-202ENSMUST00000213114 4933416C03RikQ3V063 378 aa13.02□□□□□ -0.32
Ldlr-202ENSMUST00000213114 Plppr3Q7TPB0 716 aa12.99□□□□□ -0.33
Ldlr-202ENSMUST00000213114 Prdm10Q3UTQ7 1184 aa12.99□□□□□ -0.33
Ldlr-202ENSMUST00000213114 Rtl5Q5DTT4 599 aa12.97□□□□□ -0.33
Ldlr-202ENSMUST00000213114 Atp1b4Q99ME6 356 aa12.97□□□□□ -0.33
Ldlr-202ENSMUST00000213114 Aplp2Q06335 707 aa12.95□□□□□ -0.34
Ldlr-202ENSMUST00000213114 Anp32aO35381 247 aa12.94□□□□□ -0.34
Ldlr-202ENSMUST00000213114 Mrs2Q5NCE8 434 aa12.94□□□□□ -0.34
Ldlr-202ENSMUST00000213114 Iqgap2Q3UQ44 1575 aa12.94□□□□□ -0.34
Ldlr-202ENSMUST00000213114 Rapgef2Q8CHG7 1496 aa12.94□□□□□ -0.34
Ldlr-202ENSMUST00000213114 Cttnbp2B9EJA2 1648 aa12.93□□□□□ -0.34
Ldlr-202ENSMUST00000213114 Arhgap27A2AB59 869 aa12.93□□□□□ -0.34
Ldlr-202ENSMUST00000213114 1700123L14RikQ3V2K7 440 aa12.91□□□□□ -0.34
Ldlr-202ENSMUST00000213114 Phldb1Q6PDH0 1371 aaKnown RBP12.9□□□□□ -0.34
Ldlr-202ENSMUST00000213114 Hspa5P20029 655 aaKnown RBP12.89□□□□□ -0.35
Ldlr-202ENSMUST00000213114 Calr4Q3TQS0 420 aa12.88□□□□□ -0.35
Ldlr-202ENSMUST00000213114 Rgl3Q3UYI5 709 aa12.88□□□□□ -0.35
Ldlr-202ENSMUST00000213114 Aebp1Q640N1 1128 aa12.84□□□□□ -0.35
Ldlr-202ENSMUST00000213114 Gm13695A2AK44 830 aa12.83□□□□□ -0.36
Ldlr-202ENSMUST00000213114 Ppp4r2Q0VGB7 417 aa12.8□□□□□ -0.36
Ldlr-202ENSMUST00000213114 Grwd1Q810D6 446 aaKnown RBP12.79□□□□□ -0.36
Ldlr-202ENSMUST00000213114 Nlrp6Q91WS2 869 aa12.79□□□□□ -0.36
Ldlr-202ENSMUST00000213114 Cux2P70298 1426 aa12.79□□□□□ -0.36
Ldlr-202ENSMUST00000213114 Clstn2Q9ER65 966 aa12.78□□□□□ -0.36
Ldlr-202ENSMUST00000213114 Mia2Q91ZV0 1396 aa12.78□□□□□ -0.36
Ldlr-202ENSMUST00000213114 4930567H17RikQ3V0K5 233 aa12.77□□□□□ -0.36
Ldlr-202ENSMUST00000213114 Baz1bQ9Z277 1479 aa12.77□□□□□ -0.36
Ldlr-202ENSMUST00000213114 Hdac5Q9Z2V6 1113 aa12.77□□□□□ -0.37
Ldlr-202ENSMUST00000213114 Rad21Q61550 635 aaKnown RBP12.77□□□□□ -0.37
Ldlr-202ENSMUST00000213114 P3h3Q8CG70 732 aa12.76□□□□□ -0.37
Ldlr-202ENSMUST00000213114 Sin3aQ60520 1274 aaKnown RBP12.75□□□□□ -0.37
Ldlr-202ENSMUST00000213114 Kif27Q7M6Z4 1394 aa12.74□□□□□ -0.37
Ldlr-202ENSMUST00000213114 SafbD3YXK2 937 aaKnown RBP12.71□□□□□ -0.37
Ldlr-202ENSMUST00000213114 Wdr43Q6ZQL4 677 aaKnown RBP12.71□□□□□ -0.37
Ldlr-202ENSMUST00000213114 Mtus2Q3UHD3 1353 aa12.71□□□□□ -0.37
Ldlr-202ENSMUST00000213114 Polr3glQ8R0C0 218 aa12.71□□□□□ -0.38
Ldlr-202ENSMUST00000213114 CntlnA2AM05 1397 aa12.71□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Cabp1Q9JLK7 227 aa12.7□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Rrp7aQ9D1C9 280 aaKnown RBP12.69□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Frmpd1A2AKB4 1549 aa12.69□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Fyco1Q8VDC1 1437 aa12.69□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Pkd2O35245 966 aa12.69□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Card11Q8CIS0 1159 aa12.69□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Wwc2Q6NXJ0 1187 aa12.68□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Carmil1Q6EDY6 1374 aa12.67□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Kdm2aP59997 1161 aa12.66□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Ofd1Q80Z25 1017 aa12.66□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Rpap1Q80TE0 1409 aa12.66□□□□□ -0.38
Ldlr-202ENSMUST00000213114 LrpprcQ6PB66 1392 aaKnown RBP12.65□□□□□ -0.38
Ldlr-202ENSMUST00000213114 DaxxO35613 739 aa12.65□□□□□ -0.38
Ldlr-202ENSMUST00000213114 Mphosph9A6H5Y1 991 aa12.64□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Fam71e1A1L3C1 212 aa12.64□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Arhgap35Q91YM2 1499 aa12.63□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Wdr62Q3U3T8 1523 aa12.63□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Cwc22Q8C5N3 908 aaKnown RBP12.63□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Safb2Q80YR5 991 aaKnown RBP12.62□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Mroh3A0A1D5RM54 893 aa12.62□□□□□ -0.39
Ldlr-202ENSMUST00000213114 AknaQ80VW7 1404 aa12.62□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Cc2d2aQ8CFW7 1633 aa12.61□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Upf2A2AT37 1269 aaKnown RBP12.6□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Rangap1P46061 589 aaKnown RBP12.6□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Arid3cA6PWV5 409 aa12.6□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Trak1Q6PD31 939 aa12.6□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Top2aQ01320 1528 aaKnown RBP12.59□□□□□ -0.39
Ldlr-202ENSMUST00000213114 Map4P27546 1125 aaKnown RBP12.58□□□□□ -0.4
Ldlr-202ENSMUST00000213114 ArxO35085 564 aa12.58□□□□□ -0.4
Ldlr-202ENSMUST00000213114 Ccnb3Q810T2 1396 aa12.57□□□□□ -0.4
Ldlr-202ENSMUST00000213114 Dhx29Q6PGC1 1365 aaKnown RBP12.57□□□□□ -0.4
Ldlr-202ENSMUST00000213114 Rundc1Q0VDN7 615 aa12.56□□□□□ -0.4
Ldlr-202ENSMUST00000213114 Exoc6Q8R313 802 aa12.53□□□□□ -0.4
Ldlr-202ENSMUST00000213114 Stk24Q99KH8 431 aa12.53□□□□□ -0.4
Ldlr-202ENSMUST00000213114 Shroom4Q1W617 1475 aa12.51□□□□□ -0.41
Ldlr-202ENSMUST00000213114 Bcl11aQ9QYE3 773 aa12.51□□□□□ -0.41
Ldlr-202ENSMUST00000213114 Gm20521D3Z5F7 333 aa12.51□□□□□ -0.41
Ldlr-202ENSMUST00000213114 PtprkP35822 1457 aa12.51□□□□□ -0.41
Ldlr-202ENSMUST00000213114 Srpk2O54781 681 aaKnown RBP12.5□□□□□ -0.41
Ldlr-202ENSMUST00000213114 Top2bQ64511 1612 aa12.49□□□□□ -0.41
Ldlr-202ENSMUST00000213114 Trim26Q99PN3 545 aa12.48□□□□□ -0.41
Ldlr-202ENSMUST00000213114 Apbb1Q9QXJ1 710 aa12.48□□□□□ -0.41
Ldlr-202ENSMUST00000213114 Arap1Q4LDD4 1452 aa12.47□□□□□ -0.41
Ldlr-202ENSMUST00000213114 Efcab5A0JP43 1406 aa12.47□□□□□ -0.41
Ldlr-202ENSMUST00000213114 Slc4a3P16283 1227 aa12.46□□□□□ -0.41
Ldlr-202ENSMUST00000213114 Naip1Q9QWK5 1403 aa12.46□□□□□ -0.41
Ldlr-202ENSMUST00000213114 Ifit1bl1D3Z6F0 470 aa12.46□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Mrc2Q64449 1479 aa12.45□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Neurod2Q62414 383 aa12.45□□□□□ -0.42
Ldlr-202ENSMUST00000213114 WrnO09053 1401 aa12.44□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Ppp1r18Q8BQ30 594 aa12.44□□□□□ -0.42
Ldlr-202ENSMUST00000213114 IqubQ8CDK3 788 aa12.44□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Dnajc5bQ9CQ94 199 aa12.43□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Plekhh2Q8C115 1491 aa12.43□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Usp47Q8BY87 1376 aa12.42□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Rad54l2Q99NG0 1466 aa12.42□□□□□ -0.42
Ldlr-202ENSMUST00000213114 UacaQ8CGB3 1411 aa12.42□□□□□ -0.42
Ldlr-202ENSMUST00000213114 NrkQ9R0G8 1455 aa12.42□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Ncapd3Q6ZQK0 1506 aa12.41□□□□□ -0.42
Ldlr-202ENSMUST00000213114 Exosc9Q9JHI7 438 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 22,080 RNA–protein pairs in 35.2 ms