RNA–Protein interactions for RNA: ENSMUST00000022220.12

Msh3-201, Transcript of DNA mismatch repair protein Msh3, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Msh3, Length 3,937 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3-201ENSMUST00000022220 Arhgap27A2AB59 869 aa15.24■□□□□ 0.03
Msh3-201ENSMUST00000022220 Eif5bQ05D44 1216 aaKnown RBP15.23■□□□□ 0.03
Msh3-201ENSMUST00000022220 Erich6D3Z6S9 713 aa15.22■□□□□ 0.03
Msh3-201ENSMUST00000022220 Amer1Q7TS75 1132 aa15.22■□□□□ 0.03
Msh3-201ENSMUST00000022220 Cux2P70298 1426 aa15.21■□□□□ 0.03
Msh3-201ENSMUST00000022220 Rapgef2Q8CHG7 1496 aa15.19■□□□□ 0.02
Msh3-201ENSMUST00000022220 Plppr3Q7TPB0 716 aa15.16■□□□□ 0.02
Msh3-201ENSMUST00000022220 NrdcQ8BHG1 1161 aa15.16■□□□□ 0.02
Msh3-201ENSMUST00000022220 BicraF8VPZ9 1578 aa15.15■□□□□ 0.02
Msh3-201ENSMUST00000022220 Rtl5Q5DTT4 599 aa15.14■□□□□ 0.01
Msh3-201ENSMUST00000022220 Prdm10Q3UTQ7 1184 aa15.13■□□□□ 0.01
Msh3-201ENSMUST00000022220 Iqgap2Q3UQ44 1575 aa15.12■□□□□ 0.01
Msh3-201ENSMUST00000022220 Phldb1Q6PDH0 1371 aaKnown RBP15.11■□□□□ 0.01
Msh3-201ENSMUST00000022220 Cttnbp2B9EJA2 1648 aa15.09■□□□□ 0.01
Msh3-201ENSMUST00000022220 Aebp1Q640N1 1128 aa15.06■□□□□ 0
Msh3-201ENSMUST00000022220 PrkcshO08795 521 aa15.05■□□□□ -0
Msh3-201ENSMUST00000022220 Baz1bQ9Z277 1479 aa15.04■□□□□ -0
Msh3-201ENSMUST00000022220 Calr4Q3TQS0 420 aa15□□□□□ -0.01
Msh3-201ENSMUST00000022220 Ccer2J3QPU5 274 aa14.99□□□□□ -0.01
Msh3-201ENSMUST00000022220 Rgl3Q3UYI5 709 aa14.98□□□□□ -0.01
Msh3-201ENSMUST00000022220 LrpprcQ6PB66 1392 aaKnown RBP14.98□□□□□ -0.01
Msh3-201ENSMUST00000022220 Hspa5P20029 655 aaKnown RBP14.98□□□□□ -0.01
Msh3-201ENSMUST00000022220 Anp32bQ9EST5 272 aaKnown RBP14.98□□□□□ -0.01
Msh3-201ENSMUST00000022220 Atp1b4Q99ME6 356 aa14.97□□□□□ -0.01
Msh3-201ENSMUST00000022220 Gm13697A2AK42 830 aa14.97□□□□□ -0.01
Msh3-201ENSMUST00000022220 Rpap1Q80TE0 1409 aa14.95□□□□□ -0.02
Msh3-201ENSMUST00000022220 Dhx29Q6PGC1 1365 aaKnown RBP14.94□□□□□ -0.02
Msh3-201ENSMUST00000022220 Cc2d2aQ8CFW7 1633 aa14.94□□□□□ -0.02
Msh3-201ENSMUST00000022220 Kif27Q7M6Z4 1394 aa14.92□□□□□ -0.02
Msh3-201ENSMUST00000022220 Grwd1Q810D6 446 aaKnown RBP14.92□□□□□ -0.02
Msh3-201ENSMUST00000022220 Ppp4r2Q0VGB7 417 aa14.9□□□□□ -0.02
Msh3-201ENSMUST00000022220 Dnajc5bQ9CQ94 199 aa14.9□□□□□ -0.02
Msh3-201ENSMUST00000022220 Rrp7aQ9D1C9 280 aaKnown RBP14.88□□□□□ -0.03
Msh3-201ENSMUST00000022220 Frmpd1A2AKB4 1549 aa14.88□□□□□ -0.03
Msh3-201ENSMUST00000022220 Cabp1Q9JLK7 227 aa14.87□□□□□ -0.03
Msh3-201ENSMUST00000022220 Arid3cA6PWV5 409 aa14.86□□□□□ -0.03
Msh3-201ENSMUST00000022220 AknaQ80VW7 1404 aa14.86□□□□□ -0.03
Msh3-201ENSMUST00000022220 PtprkP35822 1457 aa14.84□□□□□ -0.03
Msh3-201ENSMUST00000022220 4933416C03RikQ3V063 378 aa14.84□□□□□ -0.03
Msh3-201ENSMUST00000022220 Carmil1Q6EDY6 1374 aa14.82□□□□□ -0.04
Msh3-201ENSMUST00000022220 Mrs2Q5NCE8 434 aa14.82□□□□□ -0.04
Msh3-201ENSMUST00000022220 Nolc1E9Q5C9 702 aaKnown RBP14.81□□□□□ -0.04
Msh3-201ENSMUST00000022220 Sin3aQ60520 1274 aaKnown RBP14.81□□□□□ -0.04
Msh3-201ENSMUST00000022220 Wdr43Q6ZQL4 677 aaKnown RBP14.8□□□□□ -0.04
Msh3-201ENSMUST00000022220 Rad54l2Q99NG0 1466 aa14.79□□□□□ -0.04
Msh3-201ENSMUST00000022220 Kdm2aP59997 1161 aa14.79□□□□□ -0.04
Msh3-201ENSMUST00000022220 Mtus2Q3UHD3 1353 aa14.79□□□□□ -0.04
Msh3-201ENSMUST00000022220 Supt16hQ920B9 1047 aa14.76□□□□□ -0.05
Msh3-201ENSMUST00000022220 Top2aQ01320 1528 aaKnown RBP14.76□□□□□ -0.05
Msh3-201ENSMUST00000022220 CntlnA2AM05 1397 aa14.76□□□□□ -0.05
Msh3-201ENSMUST00000022220 Gm13695A2AK44 830 aa14.74□□□□□ -0.05
Msh3-201ENSMUST00000022220 Pkd2O35245 966 aa14.73□□□□□ -0.05
Msh3-201ENSMUST00000022220 Clstn2Q9ER65 966 aa14.73□□□□□ -0.05
Msh3-201ENSMUST00000022220 Arhgap35Q91YM2 1499 aa14.72□□□□□ -0.05
Msh3-201ENSMUST00000022220 Trak1Q6PD31 939 aa14.72□□□□□ -0.05
Msh3-201ENSMUST00000022220 Rad21Q61550 635 aaKnown RBP14.71□□□□□ -0.05
Msh3-201ENSMUST00000022220 Fyco1Q8VDC1 1437 aa14.71□□□□□ -0.06
Msh3-201ENSMUST00000022220 Ccnb3Q810T2 1396 aa14.71□□□□□ -0.06
Msh3-201ENSMUST00000022220 Shroom4Q1W617 1475 aa14.71□□□□□ -0.06
Msh3-201ENSMUST00000022220 WrnO09053 1401 aa14.7□□□□□ -0.06
Msh3-201ENSMUST00000022220 Mia2Q91ZV0 1396 aa14.69□□□□□ -0.06
Msh3-201ENSMUST00000022220 Mphosph9A6H5Y1 991 aa14.68□□□□□ -0.06
Msh3-201ENSMUST00000022220 NeflP08551 543 aa14.68□□□□□ -0.06
Msh3-201ENSMUST00000022220 P3h3Q8CG70 732 aa14.68□□□□□ -0.06
Msh3-201ENSMUST00000022220 Nlrp6Q91WS2 869 aa14.68□□□□□ -0.06
Msh3-201ENSMUST00000022220 Duox2A2AQ99 1517 aa14.68□□□□□ -0.06
Msh3-201ENSMUST00000022220 Map4P27546 1125 aaKnown RBP14.68□□□□□ -0.06
Msh3-201ENSMUST00000022220 Mroh3A0A1D5RM54 893 aa14.67□□□□□ -0.06
Msh3-201ENSMUST00000022220 Efcab5A0JP43 1406 aa14.67□□□□□ -0.06
Msh3-201ENSMUST00000022220 DaxxO35613 739 aa14.66□□□□□ -0.06
Msh3-201ENSMUST00000022220 Stk24Q99KH8 431 aa14.66□□□□□ -0.06
Msh3-201ENSMUST00000022220 Rangap1P46061 589 aaKnown RBP14.65□□□□□ -0.06
Msh3-201ENSMUST00000022220 Top2bQ64511 1612 aa14.65□□□□□ -0.07
Msh3-201ENSMUST00000022220 Znf710Q3U288 666 aa14.64□□□□□ -0.07
Msh3-201ENSMUST00000022220 Card11Q8CIS0 1159 aa14.64□□□□□ -0.07
Msh3-201ENSMUST00000022220 Polr3glQ8R0C0 218 aa14.63□□□□□ -0.07
Msh3-201ENSMUST00000022220 Wdr62Q3U3T8 1523 aa14.63□□□□□ -0.07
Msh3-201ENSMUST00000022220 Wwc2Q6NXJ0 1187 aa14.62□□□□□ -0.07
Msh3-201ENSMUST00000022220 Ccdc27Q3V036 639 aa14.61□□□□□ -0.07
Msh3-201ENSMUST00000022220 Hdac5Q9Z2V6 1113 aa14.61□□□□□ -0.07
Msh3-201ENSMUST00000022220 Grin2bQ01097 1482 aa14.61□□□□□ -0.07
Msh3-201ENSMUST00000022220 Urb2E9Q7L1 1524 aaKnown RBP14.61□□□□□ -0.07
Msh3-201ENSMUST00000022220 Arap1Q4LDD4 1452 aa14.61□□□□□ -0.07
Msh3-201ENSMUST00000022220 PogzQ8BZH4 1409 aaKnown RBP14.59□□□□□ -0.07
Msh3-201ENSMUST00000022220 Zfp644E9QA22 1323 aa14.57□□□□□ -0.08
Msh3-201ENSMUST00000022220 Sart1Q9Z315 806 aaKnown RBP14.57□□□□□ -0.08
Msh3-201ENSMUST00000022220 NrkQ9R0G8 1455 aa14.57□□□□□ -0.08
Msh3-201ENSMUST00000022220 Naip1Q9QWK5 1403 aa14.56□□□□□ -0.08
Msh3-201ENSMUST00000022220 Hsp90aa1P07901 733 aaKnown RBP14.56□□□□□ -0.08
Msh3-201ENSMUST00000022220 Upf2A2AT37 1269 aaKnown RBP14.55□□□□□ -0.08
Msh3-201ENSMUST00000022220 Rundc1Q0VDN7 615 aa14.55□□□□□ -0.08
Msh3-201ENSMUST00000022220 Safb2Q80YR5 991 aaKnown RBP14.55□□□□□ -0.08
Msh3-201ENSMUST00000022220 Gm20521D3Z5F7 333 aa14.54□□□□□ -0.08
Msh3-201ENSMUST00000022220 Tdrd9Q14BI7 1383 aa14.54□□□□□ -0.08
Msh3-201ENSMUST00000022220 Jph4Q80WT0 628 aa14.54□□□□□ -0.08
Msh3-201ENSMUST00000022220 Mroh2bQ7M6Y6 1581 aa14.53□□□□□ -0.08
Msh3-201ENSMUST00000022220 Slc4a3P16283 1227 aa14.53□□□□□ -0.08
Msh3-201ENSMUST00000022220 Ppp1r18Q8BQ30 594 aa14.53□□□□□ -0.08
Msh3-201ENSMUST00000022220 Cnga1P29974 684 aa14.52□□□□□ -0.09
Msh3-201ENSMUST00000022220 Ifit1bl1D3Z6F0 470 aa14.51□□□□□ -0.09
Retrieved 100 of 22,080 RNA–protein pairs in 27.6 ms