RNA–Protein interactions for RNA: ENSMUST00000002043.9

Ccdc47-201, Transcript of Coiled-coil domain-containing protein 47, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc47, Length 5,193 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc47-201ENSMUST00000002043 Csrnp3P59055 597 aa11.97□□□□□ -0.49
Ccdc47-201ENSMUST00000002043 Prdm10Q3UTQ7 1184 aa11.97□□□□□ -0.49
Ccdc47-201ENSMUST00000002043 Adam1bQ8R534 806 aa11.97□□□□□ -0.49
Ccdc47-201ENSMUST00000002043 DekQ7TNV0 380 aaKnown RBP11.96□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 CanxP35564 591 aaKnown RBP11.95□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 Hsp90ab1P11499 724 aaKnown RBP11.95□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 Ubl4bQ9CQ84 188 aa11.94□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 Fkbp15Q6P9Q6 1216 aaKnown RBP11.94□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 Mapk8ip2Q9ERE9 830 aa11.94□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 Rad21Q61550 635 aaKnown RBP11.93□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 Ccdc27Q3V036 639 aa11.92□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 Mbd3Q9Z2D8 285 aaKnown RBP11.92□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 IqubQ8CDK3 788 aa11.91□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 Setd5Q5XJV7 1441 aa11.91□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 Trim30dE9PWL0 497 aa11.91□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 Map7O88735 730 aa11.91□□□□□ -0.5
Ccdc47-201ENSMUST00000002043 PtmsQ9D0J8 101 aaKnown RBP11.9□□□□□ -0.51
Ccdc47-201ENSMUST00000002043 Ofd1Q80Z25 1017 aa11.88□□□□□ -0.51
Ccdc47-201ENSMUST00000002043 NudcO35685 332 aaKnown RBP11.88□□□□□ -0.51
Ccdc47-201ENSMUST00000002043 Iqcf3Q9D498 203 aa11.88□□□□□ -0.51
Ccdc47-201ENSMUST00000002043 Chic2Q9D9G3 165 aa11.87□□□□□ -0.51
Ccdc47-201ENSMUST00000002043 PtmaP26350 111 aa11.87□□□□□ -0.51
Ccdc47-201ENSMUST00000002043 Znf326O88291 580 aa11.86□□□□□ -0.51
Ccdc47-201ENSMUST00000002043 Safb2Q80YR5 991 aaKnown RBP11.85□□□□□ -0.51
Ccdc47-201ENSMUST00000002043 Arid4bA2CG63 1314 aaKnown RBP11.84□□□□□ -0.51
Ccdc47-201ENSMUST00000002043 PnnO35691 725 aaKnown RBP11.84□□□□□ -0.51
Ccdc47-201ENSMUST00000002043 Pde3bQ61409 1100 aa11.83□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Mapk8ip3Q9ESN9 1337 aa11.82□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Lmod3E9QA62 571 aa11.82□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Mia2Q91ZV0 1396 aa11.82□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Casc1Q6TDU8 730 aa11.81□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Eea1Q8BL66 1411 aa11.81□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Gm973E9Q295 1059 aa11.8□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Srpk2O54781 681 aaKnown RBP11.8□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 KnstrnQ9D9Z1 312 aaKnown RBP11.79□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Rgl3Q3UYI5 709 aa11.79□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Plcb2A3KGF7 1181 aa11.78□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 HnrnpuQ8VEK3 800 aaKnown RBP11.78□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Card11Q8CIS0 1159 aa11.77□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Rsf1E9PWW9 1441 aaKnown RBP11.77□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Mroh3A0A1D5RM54 893 aa11.77□□□□□ -0.52
Ccdc47-201ENSMUST00000002043 Gm38655A0A286YDK6 273 aa11.76□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 MccE9PWI3 1003 aa11.76□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Calcoco2A2A6M5 331 aa11.75□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Rangap1P46061 589 aaKnown RBP11.75□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Wwc2Q6NXJ0 1187 aa11.75□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Exosc9Q9JHI7 438 aaKnown RBP11.75□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Eif4g2Q62448 906 aaKnown RBP11.75□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 AU015836B2RUM3 263 aa11.74□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Gm20521D3Z5F7 333 aa11.73□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Rb1cc1Q9ESK9 1588 aa11.73□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Golga3P55937 1487 aa11.72□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Pes1Q9EQ61 584 aaKnown RBP11.72□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Ccdc18Q640L5 1455 aa11.72□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Gm6268A2A3U9 297 aa11.71□□□□□ -0.53
Ccdc47-201ENSMUST00000002043 Vsig10D3YX43 558 aa11.71□□□□□ -0.54
Ccdc47-201ENSMUST00000002043 Mtus2Q3UHD3 1353 aa11.7□□□□□ -0.54
Ccdc47-201ENSMUST00000002043 Tcerg1Q8CGF7 1100 aaKnown RBP11.7□□□□□ -0.54
Ccdc47-201ENSMUST00000002043 Rwdd1Q9CQK7 243 aa11.69□□□□□ -0.54
Ccdc47-201ENSMUST00000002043 Irx3P81067 507 aa11.69□□□□□ -0.54
Ccdc47-201ENSMUST00000002043 Trim26Q99PN3 545 aa11.69□□□□□ -0.54
Ccdc47-201ENSMUST00000002043 P3h3Q8CG70 732 aa11.69□□□□□ -0.54
Ccdc47-201ENSMUST00000002043 Dnai2A2AC93 623 aa11.68□□□□□ -0.54
Ccdc47-201ENSMUST00000002043 Sart3Q9JLI8 962 aaKnown RBP11.66□□□□□ -0.54
Ccdc47-201ENSMUST00000002043 4933402E13RikQ9D4D2 429 aa11.66□□□□□ -0.54
Ccdc47-201ENSMUST00000002043 Kdm2aP59997 1161 aa11.65□□□□□ -0.54
Ccdc47-201ENSMUST00000002043 Fam71e1A1L3C1 212 aa11.65□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 1700123L14RikQ3V2K7 440 aa11.64□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 Kif15Q6P9L6 1387 aa11.64□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 Hsp90b1P08113 802 aaKnown RBP11.63□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 NacadQ5SWP3 1504 aa11.62□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 Grwd1Q810D6 446 aaKnown RBP11.62□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 Fhad1A6PWD2 1420 aa11.61□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 Tnnt2P50752 301 aa11.6□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 Rsph4aQ8BYM7 716 aa11.6□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 Stag3O70576 1240 aa11.59□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 Chmp5Q9D7S9 219 aa11.59□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 MsnP26041 577 aaKnown RBP11.59□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 Plppr3Q7TPB0 716 aa11.58□□□□□ -0.55
Ccdc47-201ENSMUST00000002043 R3hcc1Q8BSI6 488 aa11.58□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 EspnQ9ET47 871 aa11.58□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Dnai1Q8C0M8 701 aa11.58□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Rrp7aQ9D1C9 280 aaKnown RBP11.58□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Neurod2Q62414 383 aa11.57□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Smarce1O54941 411 aaKnown RBP11.56□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Atp6v1dP57746 247 aa11.56□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Stard8Q8K031 1019 aa11.56□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Ercc6F8VPZ5 1481 aa11.56□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 AampJ3QN89 436 aa11.56□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Aebp2Q9Z248 504 aaKnown RBP11.56□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Tpm3-rs7D3Z2H9 248 aa11.56□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Zscan21Q07231 555 aa11.55□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Rtf1A2AQ19 715 aaKnown RBP11.55□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 RdxP26043 583 aaKnown RBP11.55□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Mak16Q8BGS0 296 aaKnown RBP11.53□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Apbb1Q9QXJ1 710 aa11.53□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Sh3bp5Q9Z131 463 aa11.53□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Arhgap27A2AB59 869 aa11.53□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Baz1aO88379 1555 aa11.53□□□□□ -0.56
Ccdc47-201ENSMUST00000002043 Rrp12Q6P5B0 1295 aaKnown RBP11.53□□□□□ -0.56
Retrieved 100 of 22,080 RNA–protein pairs in 10.8 ms