RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 IGHV4-30-2A0A087WSY4 118 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 SLIT3O75094 1523 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 MED1Q15648 1581 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-221ENST00000641996 TNS1Q9HBL0 1735 aaKnown RBP2.64□□□□□ -1.99
SCN1A-221ENST00000641996 C5P01031 1676 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 LINC00337Q8N6G1 96 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 KLHL30-AS1Q8NEE0 82 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 BPY2O14599 106 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 LEAP2Q969E1 77 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 DEFB108AA8MXU0 73 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 C19orf71A6NCJ1 209 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 COL1A1P02452 1464 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-221ENST00000641996 DNAJC9-AS1A6NH13 148 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 SMCR5Q8TEV8 140 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 DOT1LQ8TEK3 1739 aa2.64□□□□□ -1.99
SCN1A-221ENST00000641996 ODF3L2Q3SX64 289 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 ITPR1Q14643 2758 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 AHDC1Q5TGY3 1603 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-221ENST00000641996 ADAMTS7Q9UKP4 1686 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV3-73A0A0B4J1V6 119 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 IFI6P09912 130 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 NOVP48745 357 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV4-61A0A0C4DH41 118 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 CHTF8P0CG12 524 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 ZNF497Q6ZNH5 498 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 C20orf203Q8NBC4 194 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 FAM168AQ92567 244 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 F8VRH5 84 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 SPINK2P20155 84 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 Q75L30 129 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 PIGYQ3MUY2 71 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 FAM229BQ4G0N7 80 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV3-64DA0A0J9YX35 117 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 TSPEAR-AS2P59090 65 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 LYZL1Q6UWQ5 148 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 MRC1P22897 1456 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 CRYBG3Q68DQ2 2970 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 SRRM2Q9UQ35 2752 aaKnown RBP2.63□□□□□ -1.99
SCN1A-221ENST00000641996 NBEAL2Q6ZNJ1 2754 aa2.63□□□□□ -1.99
SCN1A-221ENST00000641996 I3L3M4 83 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 SAA2P0DJI9 122 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-221ENST00000641996 WFDC10AQ9H1F0 79 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 SPATA31D1Q6ZQQ2 1576 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 TENM3Q9P273 2699 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 MIAQ16674 131 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 C9orf116Q5BN46 136 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-221ENST00000641996 FAM218AQ96MZ4 157 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 C11orf86A6NJI1 115 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 C22orf34Q6ZV56 151 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 B9D2Q9BPU9 175 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV3-21A0A0B4J1V1 117 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV3-13P01766 116 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 LMO2P25791 158 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 LINC01547P58512 204 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-221ENST00000641996 IGKV1D-33P01593 117 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 IGKV1-33P01594 117 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 HMGA2P52926 109 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 FAM27BQ5VT28 67 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 APELAP0DMC3 54 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 RPL36AP83881 106 aaKnown RBP2.62□□□□□ -1.99
SCN1A-221ENST00000641996 RPL36ALQ969Q0 106 aaKnown RBP2.62□□□□□ -1.99
SCN1A-221ENST00000641996 CELSR2Q9HCU4 2923 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 ADGRB1O14514 1584 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV3-48P01763 117 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV4OR15-8A0A075B7B6 117 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 A0A087WW49 117 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 SYCNQ0VAF6 134 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 ARRDC1-AS1Q9H2J1 176 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 TMEM14BQ9NUH8 114 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 UBE2D3P61077 147 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 UBE2D2P62837 147 aa2.62□□□□□ -1.99
SCN1A-221ENST00000641996 C2orf66Q6UXQ4 117 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 COL11A2P13942 1736 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-221ENST00000641996 BGLAPP02818 100 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 GNRH2O43555 120 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 LINC00158P58513 81 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV4-59P01825 116 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 H7BZZ5 65 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 RNASE4P34096 147 aaKnown RBP2.61□□□□□ -1.99
SCN1A-221ENST00000641996 C9orf66Q5T8R8 295 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 IGKV3OR2-268A0A0C4DH90 116 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 A0A0J9YWU9 116 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV4-38-2P0DP08 117 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 ADM2Q7Z4H4 148 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 TJP1Q07157 1748 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV3-43A0A0B4J1X8 118 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV4-28A0A0C4DH34 117 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV3-43DP0DP04 118 aa2.61□□□□□ -1.99
SCN1A-221ENST00000641996 NRAPQ86VF7 1730 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 DEFB134Q4QY38 66 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 TMEM263Q8WUH6 116 aaKnown RBP2.6□□□□□ -1.99
SCN1A-221ENST00000641996 COL18A1P39060 1754 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 E7EUB6 86 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 C11orf21Q9P2W6 132 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 SLIT1O75093 1534 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 FBXL19-AS1Q494R0 122 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV3-33P01772 117 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 CSAG1Q6PB30 78 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 Q8IYB0 196 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 Q0VFX4 171 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms