RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 IGHV3-38A0A0C4DH36 116 aa13.55□□□□□ -0.24
UPF1-210ENST00000600689 IFITM1P13164 125 aa13.55□□□□□ -0.24
UPF1-210ENST00000600689 ATP5J2P56134 94 aa13.54□□□□□ -0.24
UPF1-210ENST00000600689 ODF3Q96PU9 254 aa13.54□□□□□ -0.24
UPF1-210ENST00000600689 PIMREGQ9BSJ6 248 aa13.54□□□□□ -0.24
UPF1-210ENST00000600689 USP24Q9UPU5 2620 aa13.54□□□□□ -0.24
UPF1-210ENST00000600689 LGALS9O00182 355 aa13.53□□□□□ -0.24
UPF1-210ENST00000600689 ID1P41134 155 aa13.53□□□□□ -0.24
UPF1-210ENST00000600689 NXPH4O95158 308 aa13.53□□□□□ -0.24
UPF1-210ENST00000600689 IGHV1-69P01742 117 aa13.53□□□□□ -0.24
UPF1-210ENST00000600689 SMIM20Q8N5G0 67 aa13.53□□□□□ -0.24
UPF1-210ENST00000600689 NDUFA12Q9UI09 145 aa13.53□□□□□ -0.24
UPF1-210ENST00000600689 FAM208BQ5VWN6 2430 aa13.53□□□□□ -0.24
UPF1-210ENST00000600689 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.53□□□□□ -0.24
UPF1-210ENST00000600689 PRB1P04280 392 aa13.53□□□□□ -0.24
UPF1-210ENST00000600689 C10orf105Q8TEF2 133 aa13.53□□□□□ -0.24
UPF1-210ENST00000600689 A0A0B4J2C4 111 aa13.52□□□□□ -0.24
UPF1-210ENST00000600689 GAGE12JA6NER3 117 aa13.52□□□□□ -0.24
UPF1-210ENST00000600689 M0R2P5 195 aa13.52□□□□□ -0.24
UPF1-210ENST00000600689 GAGE7O76087 117 aa13.52□□□□□ -0.24
UPF1-210ENST00000600689 GAGE12FP0CL80 117 aa13.52□□□□□ -0.24
UPF1-210ENST00000600689 GAGE12GP0CL81 117 aa13.52□□□□□ -0.24
UPF1-210ENST00000600689 GAGE12IP0CL82 117 aa13.52□□□□□ -0.24
UPF1-210ENST00000600689 GAGE4Q13068 117 aa13.52□□□□□ -0.24
UPF1-210ENST00000600689 ZNF462Q96JM2 2506 aa13.52□□□□□ -0.24
UPF1-210ENST00000600689 USP9YO00507 2555 aaPredicted RBP13.52□□□□□ -0.25
UPF1-210ENST00000600689 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.52□□□□□ -0.25
UPF1-210ENST00000600689 IGKV2-29A2NJV5 120 aaPredicted RBP13.52□□□□□ -0.25
UPF1-210ENST00000600689 I3L3M4 83 aa13.52□□□□□ -0.25
UPF1-210ENST00000600689 ICOSQ9Y6W8 199 aa13.52□□□□□ -0.25
UPF1-210ENST00000600689 TRBV10-2A0A0K0K1G8 114 aa13.51□□□□□ -0.25
UPF1-210ENST00000600689 POM121L12Q8N7R1 296 aa13.51□□□□□ -0.25
UPF1-210ENST00000600689 H7C423 109 aa13.5□□□□□ -0.25
UPF1-210ENST00000600689 DCANP1Q8TF63 244 aa13.5□□□□□ -0.25
UPF1-210ENST00000600689 LRRK2Q5S007 2527 aa13.5□□□□□ -0.25
UPF1-210ENST00000600689 IGHV1OR15-1A0A075B7D0 117 aa13.5□□□□□ -0.25
UPF1-210ENST00000600689 C19orf54Q5BKX5 351 aa13.49□□□□□ -0.25
UPF1-210ENST00000600689 APRG1Q8IVJ8 170 aa13.49□□□□□ -0.25
UPF1-210ENST00000600689 CHCHD5Q9BSY4 110 aa13.49□□□□□ -0.25
UPF1-210ENST00000600689 AVPP01185 164 aa13.48□□□□□ -0.25
UPF1-210ENST00000600689 RPL13AP40429 203 aaKnown RBP13.48□□□□□ -0.25
UPF1-210ENST00000600689 RPL32P62910 135 aaKnown RBP13.48□□□□□ -0.25
UPF1-210ENST00000600689 KLK9Q2XQG4 91 aa13.48□□□□□ -0.25
UPF1-210ENST00000600689 NSUN5P1Q3KNT7 163 aa13.48□□□□□ -0.25
UPF1-210ENST00000600689 TRBV6-5A0A0K0K1A5 114 aa13.48□□□□□ -0.25
UPF1-210ENST00000600689 USMG5Q96IX5 58 aa13.48□□□□□ -0.25
UPF1-210ENST00000600689 RHOHQ15669 191 aa13.47□□□□□ -0.25
UPF1-210ENST00000600689 C9orf85Q96MD7 179 aa13.47□□□□□ -0.25
UPF1-210ENST00000600689 COX6CP09669 75 aa13.47□□□□□ -0.25
UPF1-210ENST00000600689 SYNJ2BPP57105 145 aa13.47□□□□□ -0.25
UPF1-210ENST00000600689 ANKRD17O75179 2603 aaKnown RBP13.47□□□□□ -0.25
UPF1-210ENST00000600689 HIST2H2BDQ6DRA6 164 aa13.46□□□□□ -0.25
UPF1-210ENST00000600689 LITAFQ99732 161 aa13.46□□□□□ -0.25
UPF1-210ENST00000600689 TNFRSF18Q9Y5U5 241 aa13.45□□□□□ -0.26
UPF1-210ENST00000600689 SNRPD3P62318 126 aaKnown RBP13.45□□□□□ -0.26
UPF1-210ENST00000600689 MAPK1IP1LQ8NDC0 245 aa13.45□□□□□ -0.26
UPF1-210ENST00000600689 A0A0J9YX75 114 aa13.44□□□□□ -0.26
UPF1-210ENST00000600689 TRBV30A0A0K0K1B3 111 aa13.44□□□□□ -0.26
UPF1-210ENST00000600689 IGHG2P01859 326 aa13.44□□□□□ -0.26
UPF1-210ENST00000600689 MEIG1Q5JSS6 88 aa13.44□□□□□ -0.26
UPF1-210ENST00000600689 MSMBP08118 114 aa13.44□□□□□ -0.26
UPF1-210ENST00000600689 HERV-K104P63124 156 aa13.44□□□□□ -0.26
UPF1-210ENST00000600689 NBPF19A0A087WUL8 3843 aa13.43□□□□□ -0.26
UPF1-210ENST00000600689 MXRA5Q9NR99 2828 aa13.43□□□□□ -0.26
UPF1-210ENST00000600689 ZNF469Q96JG9 3925 aaPredicted RBP13.43□□□□□ -0.26
UPF1-210ENST00000600689 Q6ZSN1 163 aa13.43□□□□□ -0.26
UPF1-210ENST00000600689 IGHV1-58A0A0C4DH39 117 aa13.42□□□□□ -0.26
UPF1-210ENST00000600689 RBMY1A1P0DJD3 496 aaKnown RBP13.42□□□□□ -0.26
UPF1-210ENST00000600689 RBMY1CP0DJD4 496 aa13.42□□□□□ -0.26
UPF1-210ENST00000600689 RBMY1FQ15415 496 aaKnown RBP13.42□□□□□ -0.26
UPF1-210ENST00000600689 ABCA12Q86UK0 2595 aa13.42□□□□□ -0.26
UPF1-210ENST00000600689 TRGV11A0A075B6L2 103 aa13.42□□□□□ -0.26
UPF1-210ENST00000600689 WNK1Q9H4A3 2382 aa13.42□□□□□ -0.26
UPF1-210ENST00000600689 BBC3Q96PG8 261 aaPredicted RBP13.41□□□□□ -0.26
UPF1-210ENST00000600689 FAM104AQ969W3 186 aa13.41□□□□□ -0.26
UPF1-210ENST00000600689 CDKN2A-AS1Q9UH64 79 aa13.41□□□□□ -0.26
UPF1-210ENST00000600689 MYO9AB2RTY4 2548 aa13.4□□□□□ -0.26
UPF1-210ENST00000600689 PTPN13Q12923 2485 aa13.4□□□□□ -0.26
UPF1-210ENST00000600689 TRBV7-9A0A0J9YWB2 115 aa13.4□□□□□ -0.26
UPF1-210ENST00000600689 MIAQ16674 131 aa13.4□□□□□ -0.26
UPF1-210ENST00000600689 SHISA2Q6UWI4 295 aa13.4□□□□□ -0.26
UPF1-210ENST00000600689 VSIG2Q96IQ7 327 aa13.39□□□□□ -0.27
UPF1-210ENST00000600689 A6NDX4 124 aa13.39□□□□□ -0.27
UPF1-210ENST00000600689 NDUFA7O95182 113 aa13.39□□□□□ -0.27
UPF1-210ENST00000600689 DGAT2L7PQ6IED9 249 aa13.39□□□□□ -0.27
UPF1-210ENST00000600689 LINC00467Q9BRT7 94 aa13.39□□□□□ -0.27
UPF1-210ENST00000600689 EPG5Q9HCE0 2579 aa13.38□□□□□ -0.27
UPF1-210ENST00000600689 UBR5O95071 2799 aaPredicted RBP13.38□□□□□ -0.27
UPF1-210ENST00000600689 TMEM61Q8N0U2 210 aa13.38□□□□□ -0.27
UPF1-210ENST00000600689 SETD2Q9BYW2 2564 aaPredicted RBP13.38□□□□□ -0.27
UPF1-210ENST00000600689 MRPS36P82909 103 aaKnown RBP13.38□□□□□ -0.27
UPF1-210ENST00000600689 IGHV3OR16-12A0A075B7B8 117 aa13.37□□□□□ -0.27
UPF1-210ENST00000600689 DEFB136Q30KP8 78 aa13.37□□□□□ -0.27
UPF1-210ENST00000600689 RS1O15537 224 aa13.37□□□□□ -0.27
UPF1-210ENST00000600689 DEFB131AP59861 70 aa13.37□□□□□ -0.27
UPF1-210ENST00000600689 IGHV4-59P01825 116 aa13.36□□□□□ -0.27
UPF1-210ENST00000600689 B4DSR2 109 aa13.36□□□□□ -0.27
UPF1-210ENST00000600689 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.36□□□□□ -0.27
UPF1-210ENST00000600689 FAM236AA0A1B0GUQ0 79 aa13.36□□□□□ -0.27
UPF1-210ENST00000600689 FAM236BA0A1B0GV22 79 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms