RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 TRAV9-2A0A087WT02 112 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 A0A087WWL8 130 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 ASIPP42127 132 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 SSTP61278 116 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 IQCJQ1A5X6 159 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 LINC01559Q495D7 138 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 OR10J3Q5JRS4 329 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 LYZL1Q6UWQ5 148 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 DAZ4Q86SG3 579 aaKnown RBP6.95□□□□□ -1.3
LIG1-213ENST00000596672 PRADC1Q9BSG0 188 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 GFRA4Q9GZZ7 299 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 DAZ3Q9NR90 486 aaKnown RBP6.95□□□□□ -1.3
LIG1-213ENST00000596672 TRAPPC1Q9Y5R8 145 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 FAT3Q8TDW7 4589 aa6.95□□□□□ -1.3
LIG1-213ENST00000596672 MUC21A0A0G2JKD1 596 aa6.94□□□□□ -1.3
LIG1-213ENST00000596672 MUC21A0A140T8X8 626 aa6.94□□□□□ -1.3
LIG1-213ENST00000596672 FAM231BA6NCW3 169 aa6.94□□□□□ -1.3
LIG1-213ENST00000596672 K7EP13 123 aa6.94□□□□□ -1.3
LIG1-213ENST00000596672 CIDEAO60543 219 aa6.94□□□□□ -1.3
LIG1-213ENST00000596672 SMR3BP02814 79 aaPredicted RBP6.94□□□□□ -1.3
LIG1-213ENST00000596672 DDTP30046 118 aa6.94□□□□□ -1.3
LIG1-213ENST00000596672 RAB4BP61018 213 aa6.94□□□□□ -1.3
LIG1-213ENST00000596672 PDZD11Q5EBL8 140 aa6.94□□□□□ -1.3
LIG1-213ENST00000596672 PIK3CD-AS1Q5SR53 167 aa6.94□□□□□ -1.3
LIG1-213ENST00000596672 CDPF1Q6NVV7 123 aa6.94□□□□□ -1.3
LIG1-213ENST00000596672 SH2D6Q7Z4S9 175 aa6.94□□□□□ -1.3
LIG1-213ENST00000596672 A8MWV9 139 aa6.93□□□□□ -1.3
LIG1-213ENST00000596672 MT-ND6P03923 174 aa6.93□□□□□ -1.3
LIG1-213ENST00000596672 S100A4P26447 101 aaKnown RBP6.93□□□□□ -1.3
LIG1-213ENST00000596672 CAMPP49913 170 aa6.93□□□□□ -1.3
LIG1-213ENST00000596672 FOXA3P55318 350 aaPredicted RBP6.93□□□□□ -1.3
LIG1-213ENST00000596672 C10orf126Q8N4M7 172 aa6.93□□□□□ -1.3
LIG1-213ENST00000596672 LINC00469Q8N7U9 141 aa6.93□□□□□ -1.3
LIG1-213ENST00000596672 FER1L6-AS1Q8NA97 138 aa6.93□□□□□ -1.3
LIG1-213ENST00000596672 OR10AG1Q8NH19 301 aa6.93□□□□□ -1.3
LIG1-213ENST00000596672 BORCS7Q96B45 105 aa6.93□□□□□ -1.3
LIG1-213ENST00000596672 TRAV8-6A0A0B4J262 113 aa6.92□□□□□ -1.3
LIG1-213ENST00000596672 A0A1B0GUT8 65 aa6.92□□□□□ -1.3
LIG1-213ENST00000596672 LECT2O14960 151 aa6.92□□□□□ -1.3
LIG1-213ENST00000596672 IGLC6P0CF74 106 aa6.92□□□□□ -1.3
LIG1-213ENST00000596672 GCSHP23434 173 aa6.92□□□□□ -1.3
LIG1-213ENST00000596672 RIGQ13278 110 aa6.92□□□□□ -1.3
LIG1-213ENST00000596672 WDR73Q6P4I2 378 aa6.92□□□□□ -1.3
LIG1-213ENST00000596672 TMEM136Q6ZRR5 245 aa6.92□□□□□ -1.3
LIG1-213ENST00000596672 Q8N814 137 aa6.92□□□□□ -1.3
LIG1-213ENST00000596672 GNB1LQ9BYB4 327 aa6.92□□□□□ -1.3
LIG1-213ENST00000596672 MRPL18Q9H0U6 180 aaKnown RBP6.92□□□□□ -1.3
LIG1-213ENST00000596672 A0A1B0GXF2 115 aa6.91□□□□□ -1.3
LIG1-213ENST00000596672 EPM2AB3EWF7 344 aa6.91□□□□□ -1.3
LIG1-213ENST00000596672 M0R381 172 aa6.91□□□□□ -1.3
LIG1-213ENST00000596672 HBBP68871 147 aa6.91□□□□□ -1.3
LIG1-213ENST00000596672 LINC01620Q4KN68 170 aa6.91□□□□□ -1.3
LIG1-213ENST00000596672 FAM74A4Q5TZK3 123 aa6.91□□□□□ -1.3
LIG1-213ENST00000596672 ATP5L2Q7Z4Y8 100 aa6.91□□□□□ -1.3
LIG1-213ENST00000596672 MRPL52Q86TS9 123 aaKnown RBP6.91□□□□□ -1.3
LIG1-213ENST00000596672 NIT1Q86X76 327 aa6.91□□□□□ -1.3
LIG1-213ENST00000596672 SSBP4Q9BWG4 385 aaPredicted RBP6.91□□□□□ -1.3
LIG1-213ENST00000596672 PKHD1L1Q86WI1 4243 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 F2Z2F3 143 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 EREGO14944 169 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 APCSP02743 223 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 ESDP10768 282 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 CTRLP40313 264 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 UBE2D3P61077 147 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 UBE2D2P62837 147 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 TWIST1Q15672 202 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 KIAA1644Q3SXP7 199 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 Q5VSD8 79 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 RASL11AQ6T310 242 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 NTN5Q8WTR8 489 aaPredicted RBP6.9□□□□□ -1.3
LIG1-213ENST00000596672 C14orf144Q96I85 54 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 KIF25-AS1Q9Y6Z4 181 aa6.9□□□□□ -1.3
LIG1-213ENST00000596672 IGLV5-52A0A0A0MRZ9 124 aa6.89□□□□□ -1.31
LIG1-213ENST00000596672 SNAI2O43623 268 aa6.89□□□□□ -1.31
LIG1-213ENST00000596672 HLA-DQA1P01909 254 aa6.89□□□□□ -1.31
LIG1-213ENST00000596672 NTF3P20783 257 aa6.89□□□□□ -1.31
LIG1-213ENST00000596672 Q0VG73 95 aa6.89□□□□□ -1.31
LIG1-213ENST00000596672 LAGE3Q14657 143 aa6.89□□□□□ -1.31
LIG1-213ENST00000596672 BAALCQ8WXS3 180 aa6.89□□□□□ -1.31
LIG1-213ENST00000596672 C2orf88Q9BSF0 95 aa6.89□□□□□ -1.31
LIG1-213ENST00000596672 PHLDA3Q9Y5J5 127 aa6.89□□□□□ -1.31
LIG1-213ENST00000596672 A0A1B0GW15 77 aa6.88□□□□□ -1.31
LIG1-213ENST00000596672 PSCAO43653 123 aa6.88□□□□□ -1.31
LIG1-213ENST00000596672 Q6ZSA8 131 aa6.88□□□□□ -1.31
LIG1-213ENST00000596672 NTM-AS1Q6ZSK4 140 aa6.88□□□□□ -1.31
LIG1-213ENST00000596672 NEXN-AS1Q8NBZ9 246 aa6.88□□□□□ -1.31
LIG1-213ENST00000596672 HMCN2Q8NDA2 5059 aa6.88□□□□□ -1.31
LIG1-213ENST00000596672 RHODO00212 210 aa6.87□□□□□ -1.31
LIG1-213ENST00000596672 SCGB1D1O95968 90 aa6.87□□□□□ -1.31
LIG1-213ENST00000596672 OR5AL1P0C617 328 aa6.87□□□□□ -1.31
LIG1-213ENST00000596672 INAFM2P0DMQ5 153 aa6.87□□□□□ -1.31
LIG1-213ENST00000596672 CACNG7P62955 275 aa6.87□□□□□ -1.31
LIG1-213ENST00000596672 SPANXN1Q5VSR9 72 aa6.87□□□□□ -1.31
LIG1-213ENST00000596672 ZNF664Q8N3J9 261 aa6.87□□□□□ -1.31
LIG1-213ENST00000596672 SYT8Q8NBV8 401 aa6.87□□□□□ -1.31
LIG1-213ENST00000596672 PRO1933Q9H354 126 aa6.87□□□□□ -1.31
LIG1-213ENST00000596672 KLK12Q9UKR0 248 aa6.87□□□□□ -1.31
LIG1-213ENST00000596672 ENHOQ6UWT2 76 aa6.86□□□□□ -1.31
LIG1-213ENST00000596672 BAGE3Q86Y29 109 aa6.86□□□□□ -1.31
LIG1-213ENST00000596672 GATD1Q8NB37 220 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 150.9 ms