RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	GAGE2D	Q9UEU5	116 aa		11.35	□□□□□ -0.59
DDX39A-209	ENST00000589318	ODF3L2	Q3SX64	289 aa		11.34	□□□□□ -0.59
DDX39A-209	ENST00000589318	ANXA2R	Q3ZCQ2	193 aa		11.34	□□□□□ -0.59
DDX39A-209	ENST00000589318	LINC01549	A6NIU2	74 aa		11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318		H3BMM0	161 aa		11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318	MSRB1	Q9NZV6	116 aa		11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318	VWF	P04275	2813 aa		11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318	RBMY1B	A6NDE4	496 aa	Known RBP	11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318	RBMY1E	A6NEQ0	496 aa	Known RBP	11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318	SNCG	O76070	127 aa		11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318	IGLV1-51	P01701	117 aa		11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318	RBMY1D	P0C7P1	496 aa	Known RBP	11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318	NDUFV3	P56181	108 aa	Known RBP	11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318	SPINK13	Q1W4C9	94 aa		11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318	LINC00482	Q8N8I6	264 aa		11.33	□□□□□ -0.6
DDX39A-209	ENST00000589318	TEP1	Q99973	2627 aa	Known RBP	11.32	□□□□□ -0.6
DDX39A-209	ENST00000589318	TRAV12-2	A0A075B6T6	113 aa		11.32	□□□□□ -0.6
DDX39A-209	ENST00000589318	LOC107984156	A0A0G2JMH3	177 aa		11.32	□□□□□ -0.6
DDX39A-209	ENST00000589318	SCGB1C2	P0DMR2	95 aa		11.32	□□□□□ -0.6
DDX39A-209	ENST00000589318	ARL17A	Q8IVW1	177 aa		11.32	□□□□□ -0.6
DDX39A-209	ENST00000589318	ATR	Q13535	2644 aa		11.32	□□□□□ -0.6
DDX39A-209	ENST00000589318	TRAV12-3	A0A0B4J271	114 aa		11.31	□□□□□ -0.6
DDX39A-209	ENST00000589318	IFITM1	P13164	125 aa		11.31	□□□□□ -0.6
DDX39A-209	ENST00000589318	TTC32	Q5I0X7	151 aa		11.31	□□□□□ -0.6
DDX39A-209	ENST00000589318		H3BVH4	76 aa		11.31	□□□□□ -0.6
DDX39A-209	ENST00000589318	NHLRC4	P0CG21	123 aa	Predicted RBP	11.31	□□□□□ -0.6
DDX39A-209	ENST00000589318	ORMDL2	Q53FV1	153 aa		11.31	□□□□□ -0.6
DDX39A-209	ENST00000589318	LINC01600	Q96MT4	127 aa		11.31	□□□□□ -0.6
DDX39A-209	ENST00000589318	GNRH2	O43555	120 aa		11.3	□□□□□ -0.6
DDX39A-209	ENST00000589318	RPL32	P62910	135 aa	Known RBP	11.3	□□□□□ -0.6
DDX39A-209	ENST00000589318	IGHV4-4	A0A075B6R2	117 aa		11.29	□□□□□ -0.6
DDX39A-209	ENST00000589318	PF4	P02776	101 aa		11.29	□□□□□ -0.6
DDX39A-209	ENST00000589318	RNASE3	P12724	160 aa	Known RBP	11.29	□□□□□ -0.6
DDX39A-209	ENST00000589318	HERV-K104	P63124	156 aa		11.29	□□□□□ -0.6
DDX39A-209	ENST00000589318	SRSF9	Q13242	221 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
DDX39A-209	ENST00000589318	MRPL23	Q16540	153 aa	Known RBP	11.29	□□□□□ -0.6
DDX39A-209	ENST00000589318	MUC4	Q99102	2169 aa		11.29	□□□□□ -0.6
DDX39A-209	ENST00000589318	CD7	P09564	240 aa		11.29	□□□□□ -0.6
DDX39A-209	ENST00000589318	PAPPA-AS1	Q5QFB9	102 aa		11.29	□□□□□ -0.6
DDX39A-209	ENST00000589318	SHISA2	Q6UWI4	295 aa		11.29	□□□□□ -0.6
DDX39A-209	ENST00000589318	SPATA3	Q8NHX4	192 aa		11.29	□□□□□ -0.6
DDX39A-209	ENST00000589318	RBMY1A1	P0DJD3	496 aa	Known RBP	11.28	□□□□□ -0.6
DDX39A-209	ENST00000589318	RBMY1C	P0DJD4	496 aa		11.28	□□□□□ -0.6
DDX39A-209	ENST00000589318	RBMY1F	Q15415	496 aa	Known RBP	11.28	□□□□□ -0.6
DDX39A-209	ENST00000589318	ANKRD29	Q8N6D5	301 aa		11.28	□□□□□ -0.6
DDX39A-209	ENST00000589318	TCL1B	O95988	128 aa		11.27	□□□□□ -0.6
DDX39A-209	ENST00000589318	MED14OS	P0DP75	135 aa		11.27	□□□□□ -0.6
DDX39A-209	ENST00000589318	FAM159A	Q6UWV7	190 aa		11.27	□□□□□ -0.6
DDX39A-209	ENST00000589318	SCGB1D4	Q6XE38	83 aa		11.27	□□□□□ -0.6
DDX39A-209	ENST00000589318	NRAC	Q8N912	160 aa		11.27	□□□□□ -0.6
DDX39A-209	ENST00000589318	SPANXD	Q9BXN6	97 aa		11.27	□□□□□ -0.6
DDX39A-209	ENST00000589318	ZNF815P	A8K554	130 aa		11.27	□□□□□ -0.61
DDX39A-209	ENST00000589318	SPRY2	O43597	315 aa		11.27	□□□□□ -0.61
DDX39A-209	ENST00000589318	BEAN1	Q3B7T3	259 aa		11.27	□□□□□ -0.61
DDX39A-209	ENST00000589318	ZFP2	Q6ZN57	461 aa		11.27	□□□□□ -0.61
DDX39A-209	ENST00000589318	NEXN-AS1	Q8NBZ9	246 aa		11.27	□□□□□ -0.61
DDX39A-209	ENST00000589318	TOMM6	Q96B49	74 aa		11.27	□□□□□ -0.61
DDX39A-209	ENST00000589318	TMEM126A	Q9H061	195 aa		11.27	□□□□□ -0.61
DDX39A-209	ENST00000589318	TNFRSF18	Q9Y5U5	241 aa		11.27	□□□□□ -0.61
DDX39A-209	ENST00000589318	C10orf126	Q8N4M7	172 aa		11.26	□□□□□ -0.61
DDX39A-209	ENST00000589318	C19orf73	Q9NVV2	129 aa		11.26	□□□□□ -0.61
DDX39A-209	ENST00000589318	S100A4	P26447	101 aa	Known RBP	11.25	□□□□□ -0.61
DDX39A-209	ENST00000589318	HERVK_113	P61574	105 aa		11.25	□□□□□ -0.61
DDX39A-209	ENST00000589318	PTH2	Q96A98	100 aa		11.25	□□□□□ -0.61
DDX39A-209	ENST00000589318	PRADC1	Q9BSG0	188 aa		11.25	□□□□□ -0.61
DDX39A-209	ENST00000589318	SPANXN1	Q5VSR9	72 aa		11.25	□□□□□ -0.61
DDX39A-209	ENST00000589318	SCGB3A1	Q96QR1	104 aa		11.25	□□□□□ -0.61
DDX39A-209	ENST00000589318	IGHV1OR15-1	A0A075B7D0	117 aa		11.24	□□□□□ -0.61
DDX39A-209	ENST00000589318	SLC25A20	O43772	301 aa		11.24	□□□□□ -0.61
DDX39A-209	ENST00000589318	KRTAP24-1	Q3LI83	254 aa		11.24	□□□□□ -0.61
DDX39A-209	ENST00000589318	TRPT1	Q86TN4	253 aa	Known RBP	11.24	□□□□□ -0.61
DDX39A-209	ENST00000589318		Q8N1Y9	231 aa		11.24	□□□□□ -0.61
DDX39A-209	ENST00000589318	SMIM2	Q9BVW6	85 aa		11.24	□□□□□ -0.61
DDX39A-209	ENST00000589318	IGHV3-16	A0A0C4DH30	117 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	NXPH4	O95158	308 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	GAS8-AS1	O95177	125 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	RPL13A	P40429	203 aa	Known RBP	11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	SMIM20	Q8N5G0	67 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	TRRAP	Q9Y4A5	3859 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	FBN1	P35555	2871 aa	Known RBP	11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318		M0R381	172 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318		P0DMU3	169 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	FAM231A	P0DMU4	169 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	FAM231C	P0DMU5	169 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	C9orf85	Q96MD7	179 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	WFDC10A	Q9H1F0	79 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	MDFIC	Q9P1T7	246 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	PRO1854	Q9UHT4	67 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	PHLDA3	Q9Y5J5	127 aa		11.23	□□□□□ -0.61
DDX39A-209	ENST00000589318	GATA1	P15976	413 aa	Predicted RBP	11.22	□□□□□ -0.61
DDX39A-209	ENST00000589318	STH	Q8IWL8	128 aa		11.22	□□□□□ -0.61
DDX39A-209	ENST00000589318	CMC4	P56277	68 aa	Predicted RBP	11.21	□□□□□ -0.61
DDX39A-209	ENST00000589318	CCDC179	H3BU77	68 aa		11.21	□□□□□ -0.62
DDX39A-209	ENST00000589318	PPP1R17	O96001	155 aa		11.21	□□□□□ -0.62
DDX39A-209	ENST00000589318	NOTCH3	Q9UM47	2321 aa		11.2	□□□□□ -0.62
DDX39A-209	ENST00000589318		A0A0J9YY99	117 aa		11.2	□□□□□ -0.62
DDX39A-209	ENST00000589318	CFC1B	P0CG36	223 aa		11.19	□□□□□ -0.62
DDX39A-209	ENST00000589318	CFC1	P0CG37	223 aa		11.19	□□□□□ -0.62
DDX39A-209	ENST00000589318	SLC25A29	Q8N8R3	303 aa		11.19	□□□□□ -0.62
DDX39A-209	ENST00000589318	KIR2DL4	Q99706	377 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms