RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	CKS2	P33552	79 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	NPC2	P61916	151 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	MRPS36	P82909	103 aa	Known RBP	3.16	□□□□□ -1.9
SS18-223	ENST00000583595	VMA21	Q3ZAQ7	101 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	SDIM1	Q6ZPB5	146 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595		Q86TA4	180 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	C1orf158	Q8N1D5	194 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	LINC01560	Q8TB33	94 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	DYNLRB1	Q9NP97	96 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	OTOR	Q9NRC9	128 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	RPUSD1	Q9UJJ7	312 aa	Known RBP	3.16	□□□□□ -1.9
SS18-223	ENST00000583595	CACNA1C	Q13936	2221 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	PTPRB	P23467	1997 aa		3.16	□□□□□ -1.9
SS18-223	ENST00000583595	TECTA	O75443	2155 aa		3.15	□□□□□ -1.9
SS18-223	ENST00000583595	SHANK1	Q9Y566	2161 aa		3.15	□□□□□ -1.9
SS18-223	ENST00000583595	MYO7A	Q13402	2215 aa		3.15	□□□□□ -1.9
SS18-223	ENST00000583595	CACNA1H	O95180	2353 aa		3.15	□□□□□ -1.9
SS18-223	ENST00000583595	TRGV5	A0A0B4J1U4	118 aa		3.15	□□□□□ -1.91
SS18-223	ENST00000583595	CCL16	O15467	120 aa		3.15	□□□□□ -1.91
SS18-223	ENST00000583595	IGHV3-30	P01768	117 aa		3.15	□□□□□ -1.91
SS18-223	ENST00000583595	TCRA	P04437	139 aa		3.15	□□□□□ -1.91
SS18-223	ENST00000583595	IGHV3-30-5	P0DP03	117 aa		3.15	□□□□□ -1.91
SS18-223	ENST00000583595	PCBD1	P61457	104 aa		3.15	□□□□□ -1.91
SS18-223	ENST00000583595	FAM27B	Q5VT28	67 aa		3.15	□□□□□ -1.91
SS18-223	ENST00000583595	C10orf113	Q5VZT2	155 aa		3.15	□□□□□ -1.91
SS18-223	ENST00000583595	SFTA2	Q6UW10	78 aa		3.15	□□□□□ -1.91
SS18-223	ENST00000583595	LINC00311	Q8N616	119 aa		3.15	□□□□□ -1.91
SS18-223	ENST00000583595	LAMTOR3	Q9UHA4	124 aa		3.15	□□□□□ -1.91
SS18-223	ENST00000583595	COL27A1	Q8IZC6	1860 aa	Predicted RBP	3.15	□□□□□ -1.91
SS18-223	ENST00000583595	COL5A1	P20908	1838 aa	Predicted RBP	3.14	□□□□□ -1.91
SS18-223	ENST00000583595	TRAV41	A0A0B4J266	112 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595		A0A0J9YY99	117 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	NDUFA3	O95167	84 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	IGKV3-11	P04433	115 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	COX6C	P09669	75 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	COX6B1	P14854	86 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	FXYD7	P58549	80 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	PMAIP1	Q13794	54 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	C2orf83	Q53S99	150 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	FAM201A	Q5SY85	155 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	SPINK14	Q6IE38	97 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	TMEM75	Q8N9X5	138 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	C10orf105	Q8TEF2	133 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	TMEM263	Q8WUH6	116 aa	Known RBP	3.14	□□□□□ -1.91
SS18-223	ENST00000583595	CHCHD7	Q9BUK0	85 aa		3.14	□□□□□ -1.91
SS18-223	ENST00000583595	TRBV7-1	A0A0A6YYK4	115 aa		3.13	□□□□□ -1.91
SS18-223	ENST00000583595	TMEM30CP	A0ZSE6	113 aa		3.13	□□□□□ -1.91
SS18-223	ENST00000583595	KNCN	A6PVL3	124 aa		3.13	□□□□□ -1.91
SS18-223	ENST00000583595	LYZL6	O75951	148 aa		3.13	□□□□□ -1.91
SS18-223	ENST00000583595	ZNF22	P17026	224 aa	Predicted RBP	3.13	□□□□□ -1.91
SS18-223	ENST00000583595	LYZL1	Q6UWQ5	148 aa		3.13	□□□□□ -1.91
SS18-223	ENST00000583595		Q8IYB0	196 aa		3.13	□□□□□ -1.91
SS18-223	ENST00000583595	DAND5	Q8N907	189 aa		3.13	□□□□□ -1.91
SS18-223	ENST00000583595	ITLN2	Q8WWU7	325 aa	Predicted RBP	3.13	□□□□□ -1.91
SS18-223	ENST00000583595	C16orf95	Q9H693	158 aa		3.13	□□□□□ -1.91
SS18-223	ENST00000583595	TMEM14B	Q9NUH8	114 aa		3.13	□□□□□ -1.91
SS18-223	ENST00000583595	GVINP1	Q7Z2Y8	2422 aa		3.12	□□□□□ -1.91
SS18-223	ENST00000583595	SVIL	O95425	2214 aa		3.12	□□□□□ -1.91
SS18-223	ENST00000583595	PTPRZ1	P23471	2315 aa	Predicted RBP	3.12	□□□□□ -1.91
SS18-223	ENST00000583595	IGLV2-18	A0A075B6J9	118 aa		3.12	□□□□□ -1.91
SS18-223	ENST00000583595	IGLV3-32	A0A0A0MS00	114 aa		3.12	□□□□□ -1.91
SS18-223	ENST00000583595	FSTL3	O95633	263 aa		3.12	□□□□□ -1.91
SS18-223	ENST00000583595	ATP5E	P56381	51 aa	Predicted RBP	3.12	□□□□□ -1.91
SS18-223	ENST00000583595	PRCD	Q00LT1	54 aa		3.12	□□□□□ -1.91
SS18-223	ENST00000583595		Q6JHZ5	121 aa		3.12	□□□□□ -1.91
SS18-223	ENST00000583595	PATE2	Q6UY27	113 aa		3.12	□□□□□ -1.91
SS18-223	ENST00000583595		Q6ZRU5	148 aa		3.12	□□□□□ -1.91
SS18-223	ENST00000583595	TANC2	Q9HCD6	1990 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	RIF1	Q5UIP0	2472 aa	Known RBP	3.11	□□□□□ -1.91
SS18-223	ENST00000583595	IGKV1OR2-108	A0A075B7D4	117 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	PINLYP	A6NC86	204 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	LST1	O00453	97 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	BCE1	O60756	84 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	IGHG2	P01859	326 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	INAFM2	P0DMQ5	153 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	RNASE2	P10153	161 aa	Known RBP	3.11	□□□□□ -1.91
SS18-223	ENST00000583595	ZNF32	P17041	273 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	DAD1	P61803	113 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	PLGLA	Q15195	96 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	LINC00305	Q7Z4B0	112 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	LYPD1	Q8N2G4	141 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	RNF182	Q8N6D2	247 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	WFDC11	Q8NEX6	87 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	UBALD1	Q8TB05	177 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	SMCR5	Q8TEV8	140 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	DCANP1	Q8TF63	244 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	BRK1	Q8WUW1	75 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	CYSTM1	Q9H1C7	97 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	TMEM14C	Q9P0S9	112 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	ICOS	Q9Y6W8	199 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	CACNA1A	O00555	2505 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	NCOR2	Q9Y618	2525 aa		3.11	□□□□□ -1.91
SS18-223	ENST00000583595	MUC22	E2RYF6	1773 aa	Predicted RBP	3.1	□□□□□ -1.91
SS18-223	ENST00000583595	FAM186A	A6NE01	2351 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	GOLGA4	Q13439	2230 aa	Known RBP	3.1	□□□□□ -1.91
SS18-223	ENST00000583595	IGLV4-69	A0A075B6H9	119 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	IGKV3D-11	A0A0A0MRZ8	115 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	TRAV3	A0A0B4J244	114 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	TRAV26-2	A0A0B4J265	109 aa		3.1	□□□□□ -1.91
SS18-223	ENST00000583595	IGHV1-3	A0A0C4DH29	117 aa		3.1	□□□□□ -1.91

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