RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ZNRF2Q8NHG8 242 aa7.45□□□□□ -1.22
SS18-217ENST00000580958 SCGB3A1Q96QR1 104 aa7.45□□□□□ -1.22
SS18-217ENST00000580958 PMCHL2Q9BQD1 86 aa7.45□□□□□ -1.22
SS18-217ENST00000580958 PRO1933Q9H354 126 aa7.45□□□□□ -1.22
SS18-217ENST00000580958 DKK2Q9UBU2 259 aa7.45□□□□□ -1.22
SS18-217ENST00000580958 CYSLTR1Q9Y271 337 aa7.45□□□□□ -1.22
SS18-217ENST00000580958 TP53TG1Q9Y2A0 90 aa7.45□□□□□ -1.22
SS18-217ENST00000580958 TRBV10-1A0A0K0K1A3 114 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 LOC100131303A0A0U1RQF7 123 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 GAGE12JA6NER3 117 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 G0S2P27469 103 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 RPL39P62891 51 aaKnown RBP7.44□□□□□ -1.22
SS18-217ENST00000580958 RPL36AP83881 106 aaKnown RBP7.44□□□□□ -1.22
SS18-217ENST00000580958 GAGE1Q13065 139 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 GAGE4Q13068 117 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 GAGE5Q13069 117 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 GAGE13Q4V321 117 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 LGALS9CQ6DKI2 356 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 LURAP1LQ8IV03 231 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 ZNF664Q8N3J9 261 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 RPL36ALQ969Q0 106 aaKnown RBP7.44□□□□□ -1.22
SS18-217ENST00000580958 VAMP8Q9BV40 100 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 CELA1Q9UNI1 258 aa7.44□□□□□ -1.22
SS18-217ENST00000580958 HUWE1Q7Z6Z7 4374 aaKnown RBP7.43□□□□□ -1.22
SS18-217ENST00000580958 TRBV7-3A0A075B6L6 115 aa7.43□□□□□ -1.22
SS18-217ENST00000580958 TRBV6-4A0A1B0GX49 114 aa7.43□□□□□ -1.22
SS18-217ENST00000580958 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.43□□□□□ -1.22
SS18-217ENST00000580958 PRSS1P07477 247 aa7.43□□□□□ -1.22
SS18-217ENST00000580958 UBE2D3P61077 147 aa7.43□□□□□ -1.22
SS18-217ENST00000580958 UBE2D2P62837 147 aa7.43□□□□□ -1.22
SS18-217ENST00000580958 Q6ZN92 141 aa7.43□□□□□ -1.22
SS18-217ENST00000580958 C20orf203Q8NBC4 194 aa7.43□□□□□ -1.22
SS18-217ENST00000580958 PAM16Q9Y3D7 125 aa7.43□□□□□ -1.22
SS18-217ENST00000580958 NBEAL1Q6ZS30 2694 aa7.43□□□□□ -1.22
SS18-217ENST00000580958 K7EIL1 84 aa7.42□□□□□ -1.22
SS18-217ENST00000580958 DAD1P61803 113 aa7.42□□□□□ -1.22
SS18-217ENST00000580958 PKIAP61925 76 aa7.42□□□□□ -1.22
SS18-217ENST00000580958 COTL1Q14019 142 aa7.42□□□□□ -1.22
SS18-217ENST00000580958 MAJINQ3KP22 176 aa7.42□□□□□ -1.22
SS18-217ENST00000580958 SPATA45Q537H7 98 aa7.42□□□□□ -1.22
SS18-217ENST00000580958 KPRPQ5T749 579 aaPredicted RBP7.42□□□□□ -1.22
SS18-217ENST00000580958 MGAM2Q2M2H8 2515 aa7.42□□□□□ -1.22
SS18-217ENST00000580958 TRAV9-2A0A087WT02 112 aa7.41□□□□□ -1.22
SS18-217ENST00000580958 LINC01549A6NIU2 74 aa7.41□□□□□ -1.22
SS18-217ENST00000580958 SPART-AS1P0CW21 52 aa7.41□□□□□ -1.22
SS18-217ENST00000580958 ODF1Q14990 250 aa7.41□□□□□ -1.22
SS18-217ENST00000580958 ERASQ7Z444 233 aa7.41□□□□□ -1.22
SS18-217ENST00000580958 BAALCQ8WXS3 180 aa7.41□□□□□ -1.22
SS18-217ENST00000580958 PRADC1Q9BSG0 188 aa7.41□□□□□ -1.22
SS18-217ENST00000580958 CHCHD7Q9BUK0 85 aa7.41□□□□□ -1.22
SS18-217ENST00000580958 DNAH9Q9NYC9 4486 aa7.4□□□□□ -1.22
SS18-217ENST00000580958 A0A087WX48 190 aa7.4□□□□□ -1.22
SS18-217ENST00000580958 hDV102S1A0JD36 115 aa7.4□□□□□ -1.22
SS18-217ENST00000580958 IGIPA6NJ69 53 aa7.4□□□□□ -1.22
SS18-217ENST00000580958 TSTD3H0UI37 97 aa7.4□□□□□ -1.22
SS18-217ENST00000580958 LINC00694P0DN24 101 aa7.4□□□□□ -1.22
SS18-217ENST00000580958 CRYBA4P53673 196 aa7.4□□□□□ -1.22
SS18-217ENST00000580958 DAZ4Q86SG3 579 aaKnown RBP7.4□□□□□ -1.22
SS18-217ENST00000580958 TMEM141Q96I45 108 aa7.4□□□□□ -1.22
SS18-217ENST00000580958 TIMM17AQ99595 171 aa7.4□□□□□ -1.22
SS18-217ENST00000580958 ZMAT4Q9H898 229 aa7.4□□□□□ -1.22
SS18-217ENST00000580958 DAZ3Q9NR90 486 aaKnown RBP7.4□□□□□ -1.22
SS18-217ENST00000580958 HHLA3Q9XRX5 114 aa7.4□□□□□ -1.22
SS18-217ENST00000580958 TENM3Q9P273 2699 aa7.4□□□□□ -1.23
SS18-217ENST00000580958 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.39□□□□□ -1.23
SS18-217ENST00000580958 TRAV12-1A0A0B4J245 112 aa7.39□□□□□ -1.23
SS18-217ENST00000580958 IGKV2-29A2NJV5 120 aaPredicted RBP7.39□□□□□ -1.23
SS18-217ENST00000580958 GYPEP15421 78 aa7.39□□□□□ -1.23
SS18-217ENST00000580958 ZC2HC1BQ5TFG8 222 aa7.39□□□□□ -1.23
SS18-217ENST00000580958 SBSPONQ8IVN8 264 aa7.39□□□□□ -1.23
SS18-217ENST00000580958 MRPL35Q9NZE8 188 aaKnown RBP7.39□□□□□ -1.23
SS18-217ENST00000580958 CHTOPQ9Y3Y2 248 aaKnown RBP7.39□□□□□ -1.23
SS18-217ENST00000580958 TEX48A0A1B0GUV7 120 aa7.38□□□□□ -1.23
SS18-217ENST00000580958 PRSS29PA6NIE9 313 aa7.38□□□□□ -1.23
SS18-217ENST00000580958 HSBP1L1C9JCN9 74 aa7.38□□□□□ -1.23
SS18-217ENST00000580958 ATP5G1P05496 136 aa7.38□□□□□ -1.23
SS18-217ENST00000580958 DEFB121Q5J5C9 76 aa7.38□□□□□ -1.23
SS18-217ENST00000580958 NTM-AS1Q6ZSK4 140 aa7.38□□□□□ -1.23
SS18-217ENST00000580958 OPRPNQ99935 248 aaPredicted RBP7.38□□□□□ -1.23
SS18-217ENST00000580958 PRO0255Q9UI72 69 aa7.38□□□□□ -1.23
SS18-217ENST00000580958 IGLV4-3A0A075B6K6 122 aa7.37□□□□□ -1.23
SS18-217ENST00000580958 F5H768 121 aa7.37□□□□□ -1.23
SS18-217ENST00000580958 PAX4O43316 350 aa7.37□□□□□ -1.23
SS18-217ENST00000580958 DPM2O94777 84 aa7.37□□□□□ -1.23
SS18-217ENST00000580958 IGKCP01834 107 aa7.37□□□□□ -1.23
SS18-217ENST00000580958 HTN3P15516 51 aa7.37□□□□□ -1.23
SS18-217ENST00000580958 PMVKQ15126 192 aa7.37□□□□□ -1.23
SS18-217ENST00000580958 C12orf74Q32Q52 190 aa7.37□□□□□ -1.23
SS18-217ENST00000580958 C11orf68Q9H3H3 251 aaKnown RBP7.37□□□□□ -1.23
SS18-217ENST00000580958 PYGO1Q9Y3Y4 419 aa7.37□□□□□ -1.23
SS18-217ENST00000580958 A0A0J9YWU9 116 aa7.36□□□□□ -1.23
SS18-217ENST00000580958 A0A0J9YY99 117 aa7.36□□□□□ -1.23
SS18-217ENST00000580958 F8VRH5 84 aa7.36□□□□□ -1.23
SS18-217ENST00000580958 ANKRD39Q53RE8 183 aa7.36□□□□□ -1.23
SS18-217ENST00000580958 CEMP1Q6PRD7 247 aaPredicted RBP7.36□□□□□ -1.23
SS18-217ENST00000580958 MRAPQ8TCY5 172 aa7.36□□□□□ -1.23
SS18-217ENST00000580958 VSIG2Q96IQ7 327 aa7.36□□□□□ -1.23
SS18-217ENST00000580958 KRTAP4-12Q9BQ66 201 aa7.36□□□□□ -1.23
SS18-217ENST00000580958 SPATA25Q9BR10 227 aa7.36□□□□□ -1.23
SS18-217ENST00000580958 SPANXA1Q9NS26 97 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms