RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 M0R2P5 195 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 IGHV3-53P01767 116 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 IGHV3-33P01772 117 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 NOTCH2Q04721 2471 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 TRAV8-4A0A0B4J246 113 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 TRBV27A0A0K0K1C4 114 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 DCANP1Q8TF63 244 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 CLEC2BQ92478 149 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 SS18L2Q9UHA2 77 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 AVPP01185 164 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 IGLV4-3A0A075B6K6 122 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 A6NDX4 124 aa10.74□□□□□ -0.69
VPS35-210ENST00000568784 ZANQ9Y493 2812 aa10.73□□□□□ -0.69
VPS35-210ENST00000568784 B5MCH6 92 aa10.73□□□□□ -0.69
VPS35-210ENST00000568784 LINC01620Q4KN68 170 aa10.73□□□□□ -0.69
VPS35-210ENST00000568784 TCTEX1D4Q5JR98 221 aa10.73□□□□□ -0.69
VPS35-210ENST00000568784 TRGV11A0A075B6L2 103 aa10.73□□□□□ -0.69
VPS35-210ENST00000568784 ATP6V0E2Q8NHE4 81 aa10.73□□□□□ -0.69
VPS35-210ENST00000568784 DYNLRB2Q8TF09 96 aa10.73□□□□□ -0.69
VPS35-210ENST00000568784 A0A0J9YXY3 114 aa10.73□□□□□ -0.69
VPS35-210ENST00000568784 TMEM223A0PJW6 202 aa10.73□□□□□ -0.69
VPS35-210ENST00000568784 Q9UF83 564 aa10.73□□□□□ -0.69
VPS35-210ENST00000568784 ELANEP08246 267 aa10.72□□□□□ -0.69
VPS35-210ENST00000568784 MEIG1Q5JSS6 88 aa10.72□□□□□ -0.69
VPS35-210ENST00000568784 UBE2E2Q96LR5 201 aa10.72□□□□□ -0.69
VPS35-210ENST00000568784 LGALS9O00182 355 aa10.72□□□□□ -0.69
VPS35-210ENST00000568784 RHOHQ15669 191 aa10.72□□□□□ -0.69
VPS35-210ENST00000568784 TRAV13-1A0A0B4J241 112 aa10.71□□□□□ -0.69
VPS35-210ENST00000568784 DOPEY1Q5JWR5 2465 aa10.71□□□□□ -0.69
VPS35-210ENST00000568784 GATA3P23771 443 aa10.71□□□□□ -0.69
VPS35-210ENST00000568784 HOXD3P31249 432 aaPredicted RBP10.71□□□□□ -0.69
VPS35-210ENST00000568784 CRYBG3Q68DQ2 2970 aa10.7□□□□□ -0.7
VPS35-210ENST00000568784 TRIAP1O43715 76 aa10.7□□□□□ -0.7
VPS35-210ENST00000568784 APRG1Q8IVJ8 170 aa10.7□□□□□ -0.7
VPS35-210ENST00000568784 SLURP1P55000 103 aa10.7□□□□□ -0.7
VPS35-210ENST00000568784 C10orf105Q8TEF2 133 aa10.7□□□□□ -0.7
VPS35-210ENST00000568784 H3BMM0 161 aa10.7□□□□□ -0.7
VPS35-210ENST00000568784 RPL13AP40429 203 aaKnown RBP10.7□□□□□ -0.7
VPS35-210ENST00000568784 UBE2WQ96B02 151 aa10.7□□□□□ -0.7
VPS35-210ENST00000568784 XCL2Q9UBD3 114 aa10.7□□□□□ -0.7
VPS35-210ENST00000568784 ITPR1Q14643 2758 aa10.69□□□□□ -0.7
VPS35-210ENST00000568784 B4DSR2 109 aa10.69□□□□□ -0.7
VPS35-210ENST00000568784 H3BUA1 57 aa10.69□□□□□ -0.7
VPS35-210ENST00000568784 C15orf53Q8NAA6 179 aa10.69□□□□□ -0.7
VPS35-210ENST00000568784 A0A1W2PRX2 142 aa10.69□□□□□ -0.7
VPS35-210ENST00000568784 ACANP16112 2415 aa10.69□□□□□ -0.7
VPS35-210ENST00000568784 TRAV4A0A0B4J268 109 aa10.68□□□□□ -0.7
VPS35-210ENST00000568784 C3orf56Q8N813 242 aa10.68□□□□□ -0.7
VPS35-210ENST00000568784 TMEM263Q8WUH6 116 aaKnown RBP10.68□□□□□ -0.7
VPS35-210ENST00000568784 HIVEP2P31629 2446 aa10.68□□□□□ -0.7
VPS35-210ENST00000568784 FAM19A4Q96LR4 140 aa10.68□□□□□ -0.7
VPS35-210ENST00000568784 C9orf85Q96MD7 179 aa10.68□□□□□ -0.7
VPS35-210ENST00000568784 ZNF462Q96JM2 2506 aa10.68□□□□□ -0.7
VPS35-210ENST00000568784 K7EQG2 157 aa10.67□□□□□ -0.7
VPS35-210ENST00000568784 TOMM7Q9P0U1 55 aa10.67□□□□□ -0.7
VPS35-210ENST00000568784 ICOSQ9Y6W8 199 aa10.67□□□□□ -0.7
VPS35-210ENST00000568784 CIRBPQ14011 172 aaKnown RBP10.67□□□□□ -0.7
VPS35-210ENST00000568784 NSUN5P1Q3KNT7 163 aa10.67□□□□□ -0.7
VPS35-210ENST00000568784 C19orf54Q5BKX5 351 aa10.67□□□□□ -0.7
VPS35-210ENST00000568784 ADAMTSL4-AS1Q5T5F5 129 aa10.67□□□□□ -0.7
VPS35-210ENST00000568784 TRBV7-9A0A0J9YWB2 115 aa10.66□□□□□ -0.7
VPS35-210ENST00000568784 TRBV6-5A0A0K0K1A5 114 aa10.66□□□□□ -0.7
VPS35-210ENST00000568784 K7EMT4 169 aa10.66□□□□□ -0.7
VPS35-210ENST00000568784 NXPH4O95158 308 aa10.66□□□□□ -0.7
VPS35-210ENST00000568784 C18orf65Q6ZTR6 163 aa10.66□□□□□ -0.7
VPS35-210ENST00000568784 TRGV1A0A0A0MS02 117 aa10.66□□□□□ -0.7
VPS35-210ENST00000568784 IGLV1-40P01703 118 aa10.66□□□□□ -0.7
VPS35-210ENST00000568784 CRLF1O75462 422 aa10.65□□□□□ -0.7
VPS35-210ENST00000568784 CDKN2A-AS1Q9UH64 79 aa10.65□□□□□ -0.7
VPS35-210ENST00000568784 CFHR3Q02985 330 aa10.64□□□□□ -0.71
VPS35-210ENST00000568784 AMELXQ99217 191 aa10.64□□□□□ -0.71
VPS35-210ENST00000568784 LINC00467Q9BRT7 94 aa10.64□□□□□ -0.71
VPS35-210ENST00000568784 RPL32P62910 135 aaKnown RBP10.64□□□□□ -0.71
VPS35-210ENST00000568784 ZNF415Q09FC8 603 aa10.64□□□□□ -0.71
VPS35-210ENST00000568784 Q9H8V8 135 aa10.64□□□□□ -0.71
VPS35-210ENST00000568784 A0A0B4J2C4 111 aa10.63□□□□□ -0.71
VPS35-210ENST00000568784 IGHV1-58A0A0C4DH39 117 aa10.63□□□□□ -0.71
VPS35-210ENST00000568784 PSMB8P28062 276 aa10.63□□□□□ -0.71
VPS35-210ENST00000568784 EIF4EBP3O60516 100 aaPredicted RBP10.63□□□□□ -0.71
VPS35-210ENST00000568784 Q6ZSN1 163 aa10.63□□□□□ -0.71
VPS35-210ENST00000568784 PRIMA1Q86XR5 153 aa10.63□□□□□ -0.71
VPS35-210ENST00000568784 UTP20O75691 2785 aaKnown RBP10.63□□□□□ -0.71
VPS35-210ENST00000568784 TMEM61Q8N0U2 210 aa10.62□□□□□ -0.71
VPS35-210ENST00000568784 TRBV10-2A0A0K0K1G8 114 aa10.62□□□□□ -0.71
VPS35-210ENST00000568784 RBMY1A1P0DJD3 496 aaKnown RBP10.62□□□□□ -0.71
VPS35-210ENST00000568784 RBMY1CP0DJD4 496 aa10.62□□□□□ -0.71
VPS35-210ENST00000568784 RBMY1FQ15415 496 aaKnown RBP10.62□□□□□ -0.71
VPS35-210ENST00000568784 NDUFA7O95182 113 aa10.62□□□□□ -0.71
VPS35-210ENST00000568784 IFITM1P13164 125 aa10.61□□□□□ -0.71
VPS35-210ENST00000568784 KLK9Q2XQG4 91 aa10.61□□□□□ -0.71
VPS35-210ENST00000568784 POM121L12Q8N7R1 296 aa10.61□□□□□ -0.71
VPS35-210ENST00000568784 GAGE12JA6NER3 117 aa10.61□□□□□ -0.71
VPS35-210ENST00000568784 GAGE4Q13068 117 aa10.61□□□□□ -0.71
VPS35-210ENST00000568784 GAGE5Q13069 117 aa10.61□□□□□ -0.71
VPS35-210ENST00000568784 GAGE6Q13070 117 aa10.6□□□□□ -0.71
VPS35-210ENST00000568784 CHD6Q8TD26 2715 aa10.6□□□□□ -0.71
VPS35-210ENST00000568784 YAE1D1Q9NRH1 226 aa10.6□□□□□ -0.71
VPS35-210ENST00000568784 VSIG2Q96IQ7 327 aa10.6□□□□□ -0.71
VPS35-210ENST00000568784 ZFHX3Q15911 3703 aa10.59□□□□□ -0.71
VPS35-210ENST00000568784 CELSR2Q9HCU4 2923 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms