RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 LINC00269Q8N2A0 174 aa9.6□□□□□ -0.87
CLN3-228ENST00000567804 SMIM7Q9BQ49 75 aa9.6□□□□□ -0.87
CLN3-228ENST00000567804 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.6□□□□□ -0.87
CLN3-228ENST00000567804 NDUFS6O75380 124 aaKnown RBP9.59□□□□□ -0.87
CLN3-228ENST00000567804 CTRLP40313 264 aa9.59□□□□□ -0.87
CLN3-228ENST00000567804 IQCJQ1A5X6 159 aa9.59□□□□□ -0.87
CLN3-228ENST00000567804 XKRY2A2RUG3 117 aa9.58□□□□□ -0.88
CLN3-228ENST00000567804 ZNF727A8MUV8 499 aa9.58□□□□□ -0.88
CLN3-228ENST00000567804 PANO1I0J062 215 aa9.58□□□□□ -0.88
CLN3-228ENST00000567804 LINC01551Q86U37 167 aa9.58□□□□□ -0.88
CLN3-228ENST00000567804 GTSF1Q8WW33 167 aa9.58□□□□□ -0.88
CLN3-228ENST00000567804 IGHV1-24A0A0C4DH33 117 aa9.57□□□□□ -0.88
CLN3-228ENST00000567804 M0QY20 66 aa9.57□□□□□ -0.88
CLN3-228ENST00000567804 MGPP08493 103 aa9.57□□□□□ -0.88
CLN3-228ENST00000567804 CACNG7P62955 275 aa9.57□□□□□ -0.88
CLN3-228ENST00000567804 REG3AQ06141 175 aa9.57□□□□□ -0.88
CLN3-228ENST00000567804 SDIM1Q6ZPB5 146 aa9.57□□□□□ -0.88
CLN3-228ENST00000567804 FAM231DQ6ZW35 169 aa9.57□□□□□ -0.88
CLN3-228ENST00000567804 CLRN3Q8NCR9 226 aa9.57□□□□□ -0.88
CLN3-228ENST00000567804 PLA2G2DQ9UNK4 145 aa9.57□□□□□ -0.88
CLN3-228ENST00000567804 IGLV10-54A0A075B6I4 117 aa9.56□□□□□ -0.88
CLN3-228ENST00000567804 F2Z2F3 143 aa9.56□□□□□ -0.88
CLN3-228ENST00000567804 H7C1H1 209 aa9.56□□□□□ -0.88
CLN3-228ENST00000567804 GATCO43716 136 aaKnown RBP9.56□□□□□ -0.88
CLN3-228ENST00000567804 SUMO4Q6EEV6 95 aa9.56□□□□□ -0.88
CLN3-228ENST00000567804 C20orf203Q8NBC4 194 aa9.56□□□□□ -0.88
CLN3-228ENST00000567804 NTF3P20783 257 aa9.55□□□□□ -0.88
CLN3-228ENST00000567804 CNBPP62633 177 aaKnown RBP9.55□□□□□ -0.88
CLN3-228ENST00000567804 CIRBPQ14011 172 aaKnown RBP9.55□□□□□ -0.88
CLN3-228ENST00000567804 CNFNQ9BYD5 112 aa9.55□□□□□ -0.88
CLN3-228ENST00000567804 TRAV8-4A0A0B4J246 113 aa9.54□□□□□ -0.88
CLN3-228ENST00000567804 IGLV4-60A0A075B6I1 120 aa9.53□□□□□ -0.88
CLN3-228ENST00000567804 A0A1B0GUV1 79 aa9.53□□□□□ -0.88
CLN3-228ENST00000567804 hDV102S1A0JD36 115 aa9.53□□□□□ -0.88
CLN3-228ENST00000567804 RPL23P62829 140 aaKnown RBP9.53□□□□□ -0.88
CLN3-228ENST00000567804 PEA15Q15121 130 aa9.53□□□□□ -0.88
CLN3-228ENST00000567804 TWIST1Q15672 202 aa9.53□□□□□ -0.88
CLN3-228ENST00000567804 WDR73Q6P4I2 378 aa9.53□□□□□ -0.88
CLN3-228ENST00000567804 RASL11AQ6T310 242 aa9.53□□□□□ -0.88
CLN3-228ENST00000567804 PGLYRP4Q96LB8 373 aa9.53□□□□□ -0.88
CLN3-228ENST00000567804 TMEM243Q9BU79 118 aa9.53□□□□□ -0.88
CLN3-228ENST00000567804 GFRA4Q9GZZ7 299 aa9.53□□□□□ -0.88
CLN3-228ENST00000567804 TRGC1P0CF51 173 aa9.52□□□□□ -0.89
CLN3-228ENST00000567804 FOXA3P55318 350 aaPredicted RBP9.52□□□□□ -0.89
CLN3-228ENST00000567804 TMEM241Q24JQ0 296 aa9.52□□□□□ -0.89
CLN3-228ENST00000567804 CT83Q5H943 113 aa9.52□□□□□ -0.89
CLN3-228ENST00000567804 ISOC2Q96AB3 205 aa9.52□□□□□ -0.89
CLN3-228ENST00000567804 OSTCQ9NRP0 149 aa9.52□□□□□ -0.89
CLN3-228ENST00000567804 TNXBP22105 4242 aa9.51□□□□□ -0.89
CLN3-228ENST00000567804 A8MWL6 223 aa9.51□□□□□ -0.89
CLN3-228ENST00000567804 MT1HL1P0DM35 61 aa9.51□□□□□ -0.89
CLN3-228ENST00000567804 IFITM2Q01629 132 aa9.51□□□□□ -0.89
CLN3-228ENST00000567804 FAM74A3Q4VXF1 159 aa9.51□□□□□ -0.89
CLN3-228ENST00000567804 DPH3P1Q9H4G8 78 aa9.51□□□□□ -0.89
CLN3-228ENST00000567804 V9GYV3 84 aa9.51□□□□□ -0.89
CLN3-228ENST00000567804 IGHV3-64A0A075B6Q5 118 aa9.5□□□□□ -0.89
CLN3-228ENST00000567804 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.5□□□□□ -0.89
CLN3-228ENST00000567804 SLPIP03973 132 aa9.5□□□□□ -0.89
CLN3-228ENST00000567804 ADIRFQ15847 76 aa9.5□□□□□ -0.89
CLN3-228ENST00000567804 TSKUQ8WUA8 353 aa9.5□□□□□ -0.89
CLN3-228ENST00000567804 SMDT1Q9H4I9 107 aa9.5□□□□□ -0.89
CLN3-228ENST00000567804 NIT2Q9NQR4 276 aa9.5□□□□□ -0.89
CLN3-228ENST00000567804 AP5S1Q9NUS5 200 aa9.5□□□□□ -0.89
CLN3-228ENST00000567804 NAT8Q9UHE5 227 aa9.5□□□□□ -0.89
CLN3-228ENST00000567804 HIGD1CA8MV81 97 aa9.49□□□□□ -0.89
CLN3-228ENST00000567804 Q6ZRU5 148 aa9.49□□□□□ -0.89
CLN3-228ENST00000567804 RNF185Q96GF1 192 aa9.49□□□□□ -0.89
CLN3-228ENST00000567804 A0A087WYN8 130 aa9.48□□□□□ -0.89
CLN3-228ENST00000567804 TRAV26-2A0A0B4J265 109 aa9.48□□□□□ -0.89
CLN3-228ENST00000567804 UBE2L6O14933 153 aa9.48□□□□□ -0.89
CLN3-228ENST00000567804 CHTF8P0CG12 524 aa9.48□□□□□ -0.89
CLN3-228ENST00000567804 AMTP48728 403 aa9.48□□□□□ -0.89
CLN3-228ENST00000567804 COTL1Q14019 142 aa9.48□□□□□ -0.89
CLN3-228ENST00000567804 SPACA4Q8TDM5 124 aa9.48□□□□□ -0.89
CLN3-228ENST00000567804 RAB14P61106 215 aa9.47□□□□□ -0.89
CLN3-228ENST00000567804 C15orf56Q8N910 161 aa9.47□□□□□ -0.89
CLN3-228ENST00000567804 GATD1Q8NB37 220 aa9.47□□□□□ -0.89
CLN3-228ENST00000567804 CLLU1Q5K131 121 aa9.46□□□□□ -0.9
CLN3-228ENST00000567804 NUP35Q8NFH5 326 aa9.46□□□□□ -0.9
CLN3-228ENST00000567804 DPH3Q96FX2 82 aa9.46□□□□□ -0.9
CLN3-228ENST00000567804 A0A1B0GUT8 65 aa9.45□□□□□ -0.9
CLN3-228ENST00000567804 FAM231BA6NCW3 169 aa9.45□□□□□ -0.9
CLN3-228ENST00000567804 GAS8-AS1O95177 125 aa9.45□□□□□ -0.9
CLN3-228ENST00000567804 RPL39LQ96EH5 51 aaKnown RBP9.45□□□□□ -0.9
CLN3-228ENST00000567804 PLAC8Q9NZF1 115 aa9.45□□□□□ -0.9
CLN3-228ENST00000567804 GAGE12HA6NDE8 117 aa9.44□□□□□ -0.9
CLN3-228ENST00000567804 BORCS7Q96B45 105 aa9.44□□□□□ -0.9
CLN3-228ENST00000567804 IGKV3OR2-268A0A0C4DH90 116 aa9.43□□□□□ -0.9
CLN3-228ENST00000567804 SMIM27A0A1W2PRY6 76 aa9.43□□□□□ -0.9
CLN3-228ENST00000567804 PHOX2AO14813 284 aa9.43□□□□□ -0.9
CLN3-228ENST00000567804 CFAP161Q6P656 301 aa9.43□□□□□ -0.9
CLN3-228ENST00000567804 SMIM15Q7Z3B0 74 aa9.43□□□□□ -0.9
CLN3-228ENST00000567804 RPS10P46783 165 aaKnown RBP9.42□□□□□ -0.9
CLN3-228ENST00000567804 COX6A2Q02221 97 aa9.42□□□□□ -0.9
CLN3-228ENST00000567804 HIGD2BQ4VC39 106 aa9.42□□□□□ -0.9
CLN3-228ENST00000567804 TMEM191AQ9H0A3 160 aa9.42□□□□□ -0.9
CLN3-228ENST00000567804 NCR2O95944 276 aa9.41□□□□□ -0.9
CLN3-228ENST00000567804 AMN1Q8IY45 258 aa9.41□□□□□ -0.9
CLN3-228ENST00000567804 C7orf33Q8WU49 177 aa9.41□□□□□ -0.9
CLN3-228ENST00000567804 CHCHD10Q8WYQ3 142 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms