RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 C5orf38Q86SI9 138 aa0.28□□□□□ -2.36
HMGB1P33-201ENST00000563485 SPTSSBQ8NFR3 76 aa0.28□□□□□ -2.36
HMGB1P33-201ENST00000563485 FAM208BQ5VWN6 2430 aa0.28□□□□□ -2.36
HMGB1P33-201ENST00000563485 CPSF1Q10570 1443 aaKnown RBP0.28□□□□□ -2.37
HMGB1P33-201ENST00000563485 USP24Q9UPU5 2620 aa0.28□□□□□ -2.37
HMGB1P33-201ENST00000563485 TPRP12270 2363 aaKnown RBP0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 TTC28Q96AY4 2481 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 TRGV1A0A0A0MS02 117 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 GNG4P50150 75 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 ATP5EP56381 51 aaPredicted RBP0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 MRPS10P82664 201 aaKnown RBP0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 BAGE3Q86Y29 109 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 AQP10Q96PS8 301 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 SMR3AQ99954 134 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 AHCTF1Q8WYP5 2266 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 F8P00451 2351 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 ZMYM4Q5VZL5 1548 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 POLQO75417 2590 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 SHROOM2Q13796 1616 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 ARFGEF1Q9Y6D6 1849 aa0.27□□□□□ -2.37
HMGB1P33-201ENST00000563485 MDN1Q9NU22 5596 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 PIEZO1Q92508 2521 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 F6UZH7 168 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 H3BQ15 152 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 KRTAP2-3P0C7H8 128 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 ACYP2P14621 99 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 TPPP2P59282 170 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 CATR1Q13166 79 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 WHAMMP3Q1A5X7 153 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 KRTAP21-1Q3LI58 79 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 AMELXQ99217 191 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 CGREF1Q99674 301 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 KRTAP2-4Q9BYR9 128 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 KRTAP2-1Q9BYU5 128 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 R4GMQ9 66 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 GOLGA3Q08378 1498 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 MYH8P13535 1937 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 TNCP24821 2201 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 ASXL3Q9C0F0 2248 aa0.26□□□□□ -2.37
HMGB1P33-201ENST00000563485 CUL7Q14999 1698 aa0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 C10orf71Q711Q0 1435 aa0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 UBE2L5PA0A1B0GUS4 154 aa0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 OOSP1A8MZH6 123 aa0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 MIF4GDA9UHW6 222 aaKnown RBP0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 G3V318 75 aa0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 SMIM6P0DI80 62 aa0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 UBE2L3P68036 154 aaKnown RBP0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 RBM3P98179 157 aaKnown RBP0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 S100A7L2Q5SY68 101 aa0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 MRPL54Q6P161 138 aaKnown RBP0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 MGST2Q99735 147 aa0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 CELSR2Q9HCU4 2923 aa0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 ZFHX3Q15911 3703 aa0.25□□□□□ -2.37
HMGB1P33-201ENST00000563485 DOCK1Q14185 1865 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 PRDM2Q13029 1718 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 NRKQ7Z2Y5 1582 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 MRC1P22897 1456 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 TRBV7-3A0A075B6L6 115 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 TRAV1-2A0A0B4J238 106 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 LOC285095A0A1B0GVY8 99 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 PPP1R17O96001 155 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 PPP3R1P63098 170 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 DCDP81605 110 aaKnown RBP0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 C10orf128Q5T292 105 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 TTC9CQ8N5M4 171 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 SMIM4Q8WVI0 70 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 DPH3P1Q9H4G8 78 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 NDUFA4L2Q9NRX3 87 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 CHD9Q3L8U1 2897 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 DOCK2Q92608 1830 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 LRRC37A2A6NM11 1700 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 ARAP2Q8WZ64 1704 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 IFT172Q9UG01 1749 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 MYOM1P52179 1685 aa0.24□□□□□ -2.37
HMGB1P33-201ENST00000563485 PZPP20742 1482 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 MRC2Q9UBG0 1479 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 ZNF609O15014 1411 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 NAV2Q8IVL1 2488 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 SPTBN2O15020 2390 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 FAM24AA6NFZ4 105 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 M0R135 149 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 NMBP08949 121 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 S100PP25815 95 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 GCHFRP30047 84 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 C9orf153Q5TBE3 101 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 SPINK6Q6UWN8 80 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 FAM167A-AS1Q96KT0 104 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 DYNLRB1Q9NP97 96 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 GNG8Q9UK08 70 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 CACNA1CQ13936 2221 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 ROBO1Q9Y6N7 1651 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 DIP2CQ9Y2E4 1556 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 ZFYVE16Q7Z3T8 1539 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 C2CD3Q4AC94 2353 aa0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 LRP1Q07954 4544 aaKnown RBP0.23□□□□□ -2.37
HMGB1P33-201ENST00000563485 PTPRZ1P23471 2315 aaPredicted RBP0.22□□□□□ -2.37
HMGB1P33-201ENST00000563485 OTOGQ6ZRI0 2925 aa0.22□□□□□ -2.37
HMGB1P33-201ENST00000563485 UQCR11O14957 56 aa0.22□□□□□ -2.37
HMGB1P33-201ENST00000563485 SPINK8P0C7L1 97 aa0.22□□□□□ -2.37
HMGB1P33-201ENST00000563485 IFITM1P13164 125 aa0.22□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms