RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 C19orf71A6NCJ1 209 aa7.46□□□□□ -1.22
USP3-220ENST00000561381 NKX2-5P52952 324 aaPredicted RBP7.46□□□□□ -1.22
USP3-220ENST00000561381 REG3AQ06141 175 aa7.46□□□□□ -1.22
USP3-220ENST00000561381 SERTAD4-AS1Q5TG53 156 aa7.46□□□□□ -1.22
USP3-220ENST00000561381 SDIM1Q6ZPB5 146 aa7.46□□□□□ -1.22
USP3-220ENST00000561381 MANBALQ9NQG1 85 aa7.46□□□□□ -1.22
USP3-220ENST00000561381 TRBV20OR9-2A0A075B6H5 130 aa7.44□□□□□ -1.22
USP3-220ENST00000561381 TRAV1-1A0A0B4J248 108 aa7.44□□□□□ -1.22
USP3-220ENST00000561381 hDV102S1A0JD36 115 aa7.44□□□□□ -1.22
USP3-220ENST00000561381 H7C1H1 209 aa7.44□□□□□ -1.22
USP3-220ENST00000561381 RAB5CP51148 216 aa7.44□□□□□ -1.22
USP3-220ENST00000561381 RPS20P60866 119 aaKnown RBP7.44□□□□□ -1.22
USP3-220ENST00000561381 CACNG7P62955 275 aa7.44□□□□□ -1.22
USP3-220ENST00000561381 EIF5AP63241 154 aaKnown RBP7.44□□□□□ -1.22
USP3-220ENST00000561381 TMEM243Q9BU79 118 aa7.44□□□□□ -1.22
USP3-220ENST00000561381 SLPIP03973 132 aa7.43□□□□□ -1.22
USP3-220ENST00000561381 GNG4P50150 75 aa7.43□□□□□ -1.22
USP3-220ENST00000561381 RASL11AQ6T310 242 aa7.43□□□□□ -1.22
USP3-220ENST00000561381 LYZL1Q6UWQ5 148 aa7.43□□□□□ -1.22
USP3-220ENST00000561381 CLRN3Q8NCR9 226 aa7.43□□□□□ -1.22
USP3-220ENST00000561381 A0A1B0GUV1 79 aa7.42□□□□□ -1.22
USP3-220ENST00000561381 IFNA1P01562 189 aa7.42□□□□□ -1.22
USP3-220ENST00000561381 P01737 135 aa7.42□□□□□ -1.22
USP3-220ENST00000561381 CHTF8P0CG12 524 aa7.42□□□□□ -1.22
USP3-220ENST00000561381 NTF3P20783 257 aa7.42□□□□□ -1.22
USP3-220ENST00000561381 CNBPP62633 177 aaKnown RBP7.42□□□□□ -1.22
USP3-220ENST00000561381 TRAV8-4A0A0B4J246 113 aa7.41□□□□□ -1.22
USP3-220ENST00000561381 F2Z2F3 143 aa7.41□□□□□ -1.22
USP3-220ENST00000561381 MEF2BQ02080 365 aaPredicted RBP7.41□□□□□ -1.22
USP3-220ENST00000561381 CIRBPQ14011 172 aaKnown RBP7.41□□□□□ -1.22
USP3-220ENST00000561381 DPH3P1Q9H4G8 78 aa7.41□□□□□ -1.22
USP3-220ENST00000561381 NIT2Q9NQR4 276 aa7.41□□□□□ -1.22
USP3-220ENST00000561381 MED9Q9NWA0 146 aa7.41□□□□□ -1.22
USP3-220ENST00000561381 PLA2G2DQ9UNK4 145 aa7.41□□□□□ -1.22
USP3-220ENST00000561381 UBR4Q5T4S7 5183 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 TRAV26-2A0A0B4J265 109 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 XKRY2A2RUG3 117 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 TRGC1P0CF51 173 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 MT1HL1P0DM35 61 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 AMTP48728 403 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 SULT1A2P50226 295 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 C9orf62Q8N4C0 152 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 NUDT10Q8NFP7 164 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 SMIM12Q96EX1 92 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 NUDT11Q96G61 164 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 PGLYRP4Q96LB8 373 aa7.4□□□□□ -1.22
USP3-220ENST00000561381 IGHV3-64A0A075B6Q5 118 aa7.39□□□□□ -1.23
USP3-220ENST00000561381 A0A087WYN8 130 aa7.39□□□□□ -1.23
USP3-220ENST00000561381 IGKV3OR2-268A0A0C4DH90 116 aa7.39□□□□□ -1.23
USP3-220ENST00000561381 UBE2L6O14933 153 aa7.39□□□□□ -1.23
USP3-220ENST00000561381 PDE6DO43924 150 aa7.39□□□□□ -1.23
USP3-220ENST00000561381 BCL2P10415 239 aa7.39□□□□□ -1.23
USP3-220ENST00000561381 CTRLP40313 264 aa7.39□□□□□ -1.23
USP3-220ENST00000561381 COTL1Q14019 142 aa7.39□□□□□ -1.23
USP3-220ENST00000561381 GATD1Q8NB37 220 aa7.39□□□□□ -1.23
USP3-220ENST00000561381 AP5S1Q9NUS5 200 aa7.39□□□□□ -1.23
USP3-220ENST00000561381 GAGE12HA6NDE8 117 aa7.38□□□□□ -1.23
USP3-220ENST00000561381 TEX46H3BTG2 121 aa7.38□□□□□ -1.23
USP3-220ENST00000561381 K7EN84 100 aa7.38□□□□□ -1.23
USP3-220ENST00000561381 FOXA3P55318 350 aaPredicted RBP7.38□□□□□ -1.23
USP3-220ENST00000561381 TWIST1Q15672 202 aa7.38□□□□□ -1.23
USP3-220ENST00000561381 C15orf56Q8N910 161 aa7.38□□□□□ -1.23
USP3-220ENST00000561381 SPACA4Q8TDM5 124 aa7.38□□□□□ -1.23
USP3-220ENST00000561381 RPL39LQ96EH5 51 aaKnown RBP7.38□□□□□ -1.23
USP3-220ENST00000561381 DPH3Q96FX2 82 aa7.38□□□□□ -1.23
USP3-220ENST00000561381 RNASE7Q9H1E1 156 aaKnown RBP7.38□□□□□ -1.23
USP3-220ENST00000561381 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.37□□□□□ -1.23
USP3-220ENST00000561381 HIGD2BQ4VC39 106 aa7.37□□□□□ -1.23
USP3-220ENST00000561381 EIF5AL1Q6IS14 154 aaKnown RBP7.37□□□□□ -1.23
USP3-220ENST00000561381 WDR73Q6P4I2 378 aa7.37□□□□□ -1.23
USP3-220ENST00000561381 Q6ZNX1 250 aa7.37□□□□□ -1.23
USP3-220ENST00000561381 CNFNQ9BYD5 112 aa7.37□□□□□ -1.23
USP3-220ENST00000561381 BIN3Q9NQY0 253 aa7.37□□□□□ -1.23
USP3-220ENST00000561381 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.36□□□□□ -1.23
USP3-220ENST00000561381 IGKV2-29A2NJV5 120 aaPredicted RBP7.36□□□□□ -1.23
USP3-220ENST00000561381 OCC1Q8TAD7 63 aa7.36□□□□□ -1.23
USP3-220ENST00000561381 GTSF1Q8WW33 167 aa7.36□□□□□ -1.23
USP3-220ENST00000561381 RPP21Q9H633 154 aaKnown RBP7.36□□□□□ -1.23
USP3-220ENST00000561381 COX6A2Q02221 97 aa7.35□□□□□ -1.23
USP3-220ENST00000561381 Q6ZRU5 148 aa7.35□□□□□ -1.23
USP3-220ENST00000561381 PRSS3P2Q8NHM4 247 aa7.35□□□□□ -1.23
USP3-220ENST00000561381 PLAC8Q9NZF1 115 aa7.35□□□□□ -1.23
USP3-220ENST00000561381 PHOX2AO14813 284 aa7.34□□□□□ -1.23
USP3-220ENST00000561381 RNASEKQ6P5S7 137 aaKnown RBP7.34□□□□□ -1.23
USP3-220ENST00000561381 CHCHD10Q8WYQ3 142 aaPredicted RBP7.34□□□□□ -1.23
USP3-220ENST00000561381 RNF185Q96GF1 192 aa7.34□□□□□ -1.23
USP3-220ENST00000561381 IGKV2-24A0A0C4DH68 120 aa7.33□□□□□ -1.24
USP3-220ENST00000561381 FGF6P10767 208 aa7.33□□□□□ -1.24
USP3-220ENST00000561381 RPS10P46783 165 aaKnown RBP7.33□□□□□ -1.24
USP3-220ENST00000561381 MAJINQ3KP22 176 aa7.33□□□□□ -1.24
USP3-220ENST00000561381 AMMECR1LQ6DCA0 310 aa7.33□□□□□ -1.24
USP3-220ENST00000561381 CFAP161Q6P656 301 aa7.33□□□□□ -1.24
USP3-220ENST00000561381 SLC51BQ86UW2 128 aa7.33□□□□□ -1.24
USP3-220ENST00000561381 SDHAF1A6NFY7 115 aa7.32□□□□□ -1.24
USP3-220ENST00000561381 GAS8-AS1O95177 125 aa7.32□□□□□ -1.24
USP3-220ENST00000561381 FOXI1Q12951 378 aa7.32□□□□□ -1.24
USP3-220ENST00000561381 TCTE3Q8IZS6 198 aa7.32□□□□□ -1.24
USP3-220ENST00000561381 GVQW2A0A096LPI5 108 aaPredicted RBP7.31□□□□□ -1.24
USP3-220ENST00000561381 FAM231BA6NCW3 169 aa7.31□□□□□ -1.24
USP3-220ENST00000561381 NDUFS6O75380 124 aaKnown RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms