RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 PHLDA3Q9Y5J5 127 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 SELENOKQ9Y6D0 94 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 PRRC2AP48634 2157 aaKnown RBP1.79□□□□□ -2.12
SPG11-223ENST00000560858 DOPEY2Q9Y3R5 2298 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 MUC3AQ02505 3323 aa1.79□□□□□ -2.12
SPG11-223ENST00000560858 IGLV4-3A0A075B6K6 122 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 IGHV4-61A0A0C4DH41 118 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 TMEM223A0PJW6 202 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 F6UB75 175 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 H3BUX3 64 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 J3QQQ9 107 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 K7EQG2 157 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 M0QY20 66 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 M0R2P5 195 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 VCYO14598 125 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 LEPROTO15243 131 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 GNRH2O43555 120 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 TCL1BO95988 128 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 IGHV3-33P01772 117 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 IGHV4-39P01824 125 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 P0DMU3 169 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 FAM231AP0DMU4 169 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 FAM231CP0DMU5 169 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 IGHV4-30-4P0DP06 118 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 PSMB8P28062 276 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 DEFB1P60022 68 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 RPL39P62891 51 aaKnown RBP1.78□□□□□ -2.12
SPG11-223ENST00000560858 SMAGPQ0VAQ4 97 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 SCGB2A2Q13296 93 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 CLEC2AQ6UVW9 174 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 FAM159AQ6UWV7 190 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 SCGB1D4Q6XE38 83 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 Q6ZUT4 128 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 TRPT1Q86TN4 253 aaKnown RBP1.78□□□□□ -2.12
SPG11-223ENST00000560858 MTURNQ8N3F0 131 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 ANKRD29Q8N6D5 301 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 C20orf203Q8NBC4 194 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 ZNRF2Q8NHG8 242 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 C10orf105Q8TEF2 133 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 ZNF418Q8TF45 676 aaPredicted RBP1.78□□□□□ -2.12
SPG11-223ENST00000560858 PTH2Q96A98 100 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 CARD19Q96LW7 228 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 RHPN1-AS1Q9BWJ2 59 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 SPANXDQ9BXN6 97 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 JPT2Q9H910 190 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 SPANXCQ9NY87 97 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 PYGO1Q9Y3Y4 419 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 DCHS2Q6V1P9 2916 aa1.78□□□□□ -2.12
SPG11-223ENST00000560858 RIF1Q5UIP0 2472 aaKnown RBP1.78□□□□□ -2.12
SPG11-223ENST00000560858 ADGRG4Q8IZF6 3080 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 DMXL2Q8TDJ6 3036 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 BOD1L1Q8NFC6 3051 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 IGHV1OR15-1A0A075B7D0 117 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 IGLV5-45A0A087WSX0 123 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 A0A096LNT2 108 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.77□□□□□ -2.13
SPG11-223ENST00000560858 TRAV2A0A0B4J234 112 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 TRBV30A0A0K0K1B3 111 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 A4D1N5 150 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 A8MWV9 139 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 H3BT86 120 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 C19orf84I3L1E1 186 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 J3KRW8 73 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 TIMM17BO60830 172 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 IGHV3-11P01762 117 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 MT-ATP8P03928 68 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 ZNF688P0C7X2 276 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 IGHV4-38-2P0DP08 117 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 LGALS3P17931 250 aaKnown RBP1.77□□□□□ -2.13
SPG11-223ENST00000560858 EDN2P20800 178 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 RPL13AP40429 203 aaKnown RBP1.77□□□□□ -2.13
SPG11-223ENST00000560858 ID1P41134 155 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 XGP55808 180 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 MRPS36P82909 103 aaKnown RBP1.77□□□□□ -2.13
SPG11-223ENST00000560858 SRSF9Q13242 221 aaKnown RBP eCLIP1.77□□□□□ -2.13
SPG11-223ENST00000560858 ZNF56Q15929 161 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 TMEM170BQ5T4T1 132 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 Q6Q795 121 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 BRD3OSQ6XYD6 125 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 KLHL30-AS1Q8NEE0 82 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 TMEM263Q8WUH6 116 aaKnown RBP1.77□□□□□ -2.13
SPG11-223ENST00000560858 FAM104AQ969W3 186 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 RNF183Q96D59 192 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 CITED1Q99966 193 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 LINC00467Q9BRT7 94 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 PPDPFQ9H3Y8 114 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 SPANXA1Q9NS26 97 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 PRO1854Q9UHT4 67 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 LINC00527Q9UJ94 153 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 SMG1Q96Q15 3661 aaKnown RBP1.77□□□□□ -2.13
SPG11-223ENST00000560858 ATMQ13315 3056 aa1.77□□□□□ -2.13
SPG11-223ENST00000560858 KALRNO60229 2985 aa1.76□□□□□ -2.13
SPG11-223ENST00000560858 SPTA1P02549 2419 aa1.76□□□□□ -2.13
SPG11-223ENST00000560858 AKAP6Q13023 2319 aa1.76□□□□□ -2.13
SPG11-223ENST00000560858 IGHV3OR16-10A0A075B7F0 116 aa1.76□□□□□ -2.13
SPG11-223ENST00000560858 IGHV4-30-2A0A087WSY4 118 aa1.76□□□□□ -2.13
SPG11-223ENST00000560858 TRAV12-3A0A0B4J271 114 aa1.76□□□□□ -2.13
SPG11-223ENST00000560858 IGHV1-58A0A0C4DH39 117 aa1.76□□□□□ -2.13
SPG11-223ENST00000560858 LOC107984156A0A0G2JMH3 177 aa1.76□□□□□ -2.13
SPG11-223ENST00000560858 A0A0J9YXV3 536 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 529.3 ms