RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 SDIM1Q6ZPB5 146 aa7.46□□□□□ -1.22
USP3-214ENST00000559718 MANBALQ9NQG1 85 aa7.46□□□□□ -1.22
USP3-214ENST00000559718 TRBV20OR9-2A0A075B6H5 130 aa7.44□□□□□ -1.22
USP3-214ENST00000559718 TRAV1-1A0A0B4J248 108 aa7.44□□□□□ -1.22
USP3-214ENST00000559718 hDV102S1A0JD36 115 aa7.44□□□□□ -1.22
USP3-214ENST00000559718 H7C1H1 209 aa7.44□□□□□ -1.22
USP3-214ENST00000559718 RAB5CP51148 216 aa7.44□□□□□ -1.22
USP3-214ENST00000559718 RPS20P60866 119 aaKnown RBP7.44□□□□□ -1.22
USP3-214ENST00000559718 CACNG7P62955 275 aa7.44□□□□□ -1.22
USP3-214ENST00000559718 EIF5AP63241 154 aaKnown RBP7.44□□□□□ -1.22
USP3-214ENST00000559718 TMEM243Q9BU79 118 aa7.44□□□□□ -1.22
USP3-214ENST00000559718 KRTAP4-9Q9BYQ8 210 aa7.44□□□□□ -1.22
USP3-214ENST00000559718 SLPIP03973 132 aa7.43□□□□□ -1.22
USP3-214ENST00000559718 GNG4P50150 75 aa7.43□□□□□ -1.22
USP3-214ENST00000559718 RASL11AQ6T310 242 aa7.43□□□□□ -1.22
USP3-214ENST00000559718 LYZL1Q6UWQ5 148 aa7.43□□□□□ -1.22
USP3-214ENST00000559718 CLRN3Q8NCR9 226 aa7.43□□□□□ -1.22
USP3-214ENST00000559718 A0A1B0GUV1 79 aa7.42□□□□□ -1.22
USP3-214ENST00000559718 IFNA1P01562 189 aa7.42□□□□□ -1.22
USP3-214ENST00000559718 P01737 135 aa7.42□□□□□ -1.22
USP3-214ENST00000559718 CHTF8P0CG12 524 aa7.42□□□□□ -1.22
USP3-214ENST00000559718 NTF3P20783 257 aa7.42□□□□□ -1.22
USP3-214ENST00000559718 CNBPP62633 177 aaKnown RBP7.42□□□□□ -1.22
USP3-214ENST00000559718 TRAV8-4A0A0B4J246 113 aa7.41□□□□□ -1.22
USP3-214ENST00000559718 F2Z2F3 143 aa7.41□□□□□ -1.22
USP3-214ENST00000559718 MEF2BQ02080 365 aaPredicted RBP7.41□□□□□ -1.22
USP3-214ENST00000559718 CIRBPQ14011 172 aaKnown RBP7.41□□□□□ -1.22
USP3-214ENST00000559718 DPH3P1Q9H4G8 78 aa7.41□□□□□ -1.22
USP3-214ENST00000559718 NIT2Q9NQR4 276 aa7.41□□□□□ -1.22
USP3-214ENST00000559718 MED9Q9NWA0 146 aa7.41□□□□□ -1.22
USP3-214ENST00000559718 PLA2G2DQ9UNK4 145 aa7.41□□□□□ -1.22
USP3-214ENST00000559718 UBR4Q5T4S7 5183 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 TRAV26-2A0A0B4J265 109 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 XKRY2A2RUG3 117 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 TRGC1P0CF51 173 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 MT1HL1P0DM35 61 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 AMTP48728 403 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 SULT1A2P50226 295 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 C9orf62Q8N4C0 152 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 NUDT10Q8NFP7 164 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 SMIM12Q96EX1 92 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 NUDT11Q96G61 164 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 PGLYRP4Q96LB8 373 aa7.4□□□□□ -1.22
USP3-214ENST00000559718 IGHV3-64A0A075B6Q5 118 aa7.39□□□□□ -1.23
USP3-214ENST00000559718 A0A087WYN8 130 aa7.39□□□□□ -1.23
USP3-214ENST00000559718 IGKV3OR2-268A0A0C4DH90 116 aa7.39□□□□□ -1.23
USP3-214ENST00000559718 UBE2L6O14933 153 aa7.39□□□□□ -1.23
USP3-214ENST00000559718 PDE6DO43924 150 aa7.39□□□□□ -1.23
USP3-214ENST00000559718 BCL2P10415 239 aa7.39□□□□□ -1.23
USP3-214ENST00000559718 CTRLP40313 264 aa7.39□□□□□ -1.23
USP3-214ENST00000559718 COTL1Q14019 142 aa7.39□□□□□ -1.23
USP3-214ENST00000559718 GATD1Q8NB37 220 aa7.39□□□□□ -1.23
USP3-214ENST00000559718 AP5S1Q9NUS5 200 aa7.39□□□□□ -1.23
USP3-214ENST00000559718 GAGE12HA6NDE8 117 aa7.38□□□□□ -1.23
USP3-214ENST00000559718 TEX46H3BTG2 121 aa7.38□□□□□ -1.23
USP3-214ENST00000559718 K7EN84 100 aa7.38□□□□□ -1.23
USP3-214ENST00000559718 FOXA3P55318 350 aaPredicted RBP7.38□□□□□ -1.23
USP3-214ENST00000559718 TWIST1Q15672 202 aa7.38□□□□□ -1.23
USP3-214ENST00000559718 C15orf56Q8N910 161 aa7.38□□□□□ -1.23
USP3-214ENST00000559718 SPACA4Q8TDM5 124 aa7.38□□□□□ -1.23
USP3-214ENST00000559718 RPL39LQ96EH5 51 aaKnown RBP7.38□□□□□ -1.23
USP3-214ENST00000559718 DPH3Q96FX2 82 aa7.38□□□□□ -1.23
USP3-214ENST00000559718 RNASE7Q9H1E1 156 aaKnown RBP7.38□□□□□ -1.23
USP3-214ENST00000559718 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.37□□□□□ -1.23
USP3-214ENST00000559718 HIGD2BQ4VC39 106 aa7.37□□□□□ -1.23
USP3-214ENST00000559718 EIF5AL1Q6IS14 154 aaKnown RBP7.37□□□□□ -1.23
USP3-214ENST00000559718 WDR73Q6P4I2 378 aa7.37□□□□□ -1.23
USP3-214ENST00000559718 Q6ZNX1 250 aa7.37□□□□□ -1.23
USP3-214ENST00000559718 CNFNQ9BYD5 112 aa7.37□□□□□ -1.23
USP3-214ENST00000559718 BIN3Q9NQY0 253 aa7.37□□□□□ -1.23
USP3-214ENST00000559718 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.36□□□□□ -1.23
USP3-214ENST00000559718 IGKV2-29A2NJV5 120 aaPredicted RBP7.36□□□□□ -1.23
USP3-214ENST00000559718 OCC1Q8TAD7 63 aa7.36□□□□□ -1.23
USP3-214ENST00000559718 GTSF1Q8WW33 167 aa7.36□□□□□ -1.23
USP3-214ENST00000559718 RPP21Q9H633 154 aaKnown RBP7.36□□□□□ -1.23
USP3-214ENST00000559718 COX6A2Q02221 97 aa7.35□□□□□ -1.23
USP3-214ENST00000559718 Q6ZRU5 148 aa7.35□□□□□ -1.23
USP3-214ENST00000559718 PRSS3P2Q8NHM4 247 aa7.35□□□□□ -1.23
USP3-214ENST00000559718 PLAC8Q9NZF1 115 aa7.35□□□□□ -1.23
USP3-214ENST00000559718 PHOX2AO14813 284 aa7.34□□□□□ -1.23
USP3-214ENST00000559718 RNASEKQ6P5S7 137 aaKnown RBP7.34□□□□□ -1.23
USP3-214ENST00000559718 CHCHD10Q8WYQ3 142 aaPredicted RBP7.34□□□□□ -1.23
USP3-214ENST00000559718 RNF185Q96GF1 192 aa7.34□□□□□ -1.23
USP3-214ENST00000559718 IGKV2-24A0A0C4DH68 120 aa7.33□□□□□ -1.24
USP3-214ENST00000559718 FGF6P10767 208 aa7.33□□□□□ -1.24
USP3-214ENST00000559718 RPS10P46783 165 aaKnown RBP7.33□□□□□ -1.24
USP3-214ENST00000559718 MAJINQ3KP22 176 aa7.33□□□□□ -1.24
USP3-214ENST00000559718 AMMECR1LQ6DCA0 310 aa7.33□□□□□ -1.24
USP3-214ENST00000559718 CFAP161Q6P656 301 aa7.33□□□□□ -1.24
USP3-214ENST00000559718 SLC51BQ86UW2 128 aa7.33□□□□□ -1.24
USP3-214ENST00000559718 SDHAF1A6NFY7 115 aa7.32□□□□□ -1.24
USP3-214ENST00000559718 GAS8-AS1O95177 125 aa7.32□□□□□ -1.24
USP3-214ENST00000559718 FOXI1Q12951 378 aa7.32□□□□□ -1.24
USP3-214ENST00000559718 TCTE3Q8IZS6 198 aa7.32□□□□□ -1.24
USP3-214ENST00000559718 GVQW2A0A096LPI5 108 aaPredicted RBP7.31□□□□□ -1.24
USP3-214ENST00000559718 FAM231BA6NCW3 169 aa7.31□□□□□ -1.24
USP3-214ENST00000559718 KRTAP9-7A8MTY7 169 aa7.31□□□□□ -1.24
USP3-214ENST00000559718 NDUFS6O75380 124 aaKnown RBP7.31□□□□□ -1.24
USP3-214ENST00000559718 NCR2O95944 276 aa7.31□□□□□ -1.24
USP3-214ENST00000559718 APCSP02743 223 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms