RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 LEAP2Q969E1 77 aa6.07□□□□□ -1.44
USP3-211ENST00000559257 NCR3O14931 201 aa6.06□□□□□ -1.44
USP3-211ENST00000559257 IGLV2-23P01705 113 aa6.06□□□□□ -1.44
USP3-211ENST00000559257 NREPQ16612 68 aa6.06□□□□□ -1.44
USP3-211ENST00000559257 LCE2DQ5TA82 110 aaPredicted RBP6.06□□□□□ -1.44
USP3-211ENST00000559257 CLEC19AQ6UXS0 136 aa6.06□□□□□ -1.44
USP3-211ENST00000559257 GGNQ86UU5 652 aa6.06□□□□□ -1.44
USP3-211ENST00000559257 MRPL33O75394 65 aaKnown RBP6.06□□□□□ -1.44
USP3-211ENST00000559257 TFF1P04155 84 aa6.06□□□□□ -1.44
USP3-211ENST00000559257 CCL4P13236 92 aa6.06□□□□□ -1.44
USP3-211ENST00000559257 ORMDL1Q9P0S3 153 aa6.06□□□□□ -1.44
USP3-211ENST00000559257 ZNHIT1O43257 154 aa6.05□□□□□ -1.44
USP3-211ENST00000559257 MGPP08493 103 aa6.05□□□□□ -1.44
USP3-211ENST00000559257 PRB4P10163 310 aaPredicted RBP6.05□□□□□ -1.44
USP3-211ENST00000559257 RPL27AP46776 148 aaKnown RBP6.05□□□□□ -1.44
USP3-211ENST00000559257 MIR7-3HGQ8N6C7 128 aa6.05□□□□□ -1.44
USP3-211ENST00000559257 ARFGEF3Q5TH69 2177 aa6.05□□□□□ -1.44
USP3-211ENST00000559257 SVILO95425 2214 aa6.05□□□□□ -1.44
USP3-211ENST00000559257 IGLV4-3A0A075B6K6 122 aa6.05□□□□□ -1.44
USP3-211ENST00000559257 PSPHP1O15172 72 aa6.05□□□□□ -1.44
USP3-211ENST00000559257 KIF25-AS1Q9Y6Z4 181 aa6.05□□□□□ -1.44
USP3-211ENST00000559257 C16orf90A8MZG2 172 aa6.04□□□□□ -1.44
USP3-211ENST00000559257 MRGPRG-AS1Q2M3A8 158 aa6.04□□□□□ -1.44
USP3-211ENST00000559257 NKAPP1Q8N9T2 125 aa6.04□□□□□ -1.44
USP3-211ENST00000559257 LY6G6EA0A0G2JKS1 128 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 LINC01547P58512 204 aaPredicted RBP6.03□□□□□ -1.44
USP3-211ENST00000559257 CCL17Q92583 94 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 BBC3Q96PG8 261 aaPredicted RBP6.03□□□□□ -1.44
USP3-211ENST00000559257 SMAD5-AS1Q9Y6J3 95 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 U3KQA8 63 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 PRR14LQ5THK1 2151 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 A0A087WYN8 130 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 IGHV3-21A0A0B4J1V1 117 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 Q5VV11 94 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 C20orf203Q8NBC4 194 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 LINC00167Q96N53 147 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 ZNF576Q9H609 170 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 LENEPQ9Y5L5 61 aa6.03□□□□□ -1.44
USP3-211ENST00000559257 SRRM5B3KS81 715 aa6.02□□□□□ -1.45
USP3-211ENST00000559257 LINC00315P59091 139 aa6.02□□□□□ -1.45
USP3-211ENST00000559257 C11orf72Q8NBR9 251 aa6.02□□□□□ -1.45
USP3-211ENST00000559257 ESM1Q9NQ30 184 aa6.02□□□□□ -1.45
USP3-211ENST00000559257 NAV3Q8IVL0 2385 aa6.02□□□□□ -1.45
USP3-211ENST00000559257 TRAV21A0A0B4J279 112 aa6.02□□□□□ -1.45
USP3-211ENST00000559257 IGHV3-64DA0A0J9YX35 117 aa6.02□□□□□ -1.45
USP3-211ENST00000559257 IGHV3-9P01782 118 aa6.02□□□□□ -1.45
USP3-211ENST00000559257 Q8N3U1 123 aa6.02□□□□□ -1.45
USP3-211ENST00000559257 CYP4F30PQ9H0H9 118 aa6.02□□□□□ -1.45
USP3-211ENST00000559257 CRPP02741 224 aa6.01□□□□□ -1.45
USP3-211ENST00000559257 C9orf47Q6ZRZ4 202 aa6.01□□□□□ -1.45
USP3-211ENST00000559257 FAM19A3Q7Z5A8 133 aa6.01□□□□□ -1.45
USP3-211ENST00000559257 IGKV2-29A2NJV5 120 aaPredicted RBP6.01□□□□□ -1.45
USP3-211ENST00000559257 C1orf64Q8NEQ6 169 aa6.01□□□□□ -1.45
USP3-211ENST00000559257 LOC100131303A0A0U1RQF7 123 aa6□□□□□ -1.45
USP3-211ENST00000559257 MALRD1Q5VYJ5 2156 aa6□□□□□ -1.45
USP3-211ENST00000559257 ASXL3Q9C0F0 2248 aa6□□□□□ -1.45
USP3-211ENST00000559257 K7EIM0 57 aa5.99□□□□□ -1.45
USP3-211ENST00000559257 GNRH2O43555 120 aa5.99□□□□□ -1.45
USP3-211ENST00000559257 PSCAO43653 123 aa5.99□□□□□ -1.45
USP3-211ENST00000559257 SUMO4Q6EEV6 95 aa5.99□□□□□ -1.45
USP3-211ENST00000559257 PRAC2D3DTV9 90 aa5.99□□□□□ -1.45
USP3-211ENST00000559257 HCG22E2RYF7 251 aa5.99□□□□□ -1.45
USP3-211ENST00000559257 CCL24O00175 119 aa5.99□□□□□ -1.45
USP3-211ENST00000559257 S100A4P26447 101 aaKnown RBP5.99□□□□□ -1.45
USP3-211ENST00000559257 LINC01356Q8N9X3 169 aa5.99□□□□□ -1.45
USP3-211ENST00000559257 BRWD1Q9NSI6 2320 aa5.99□□□□□ -1.45
USP3-211ENST00000559257 KNL1Q8NG31 2342 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 ASCC3Q8N3C0 2202 aaKnown RBP5.98□□□□□ -1.45
USP3-211ENST00000559257 DOCK10Q96BY6 2186 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 IGHV1OR15-1A0A075B7D0 117 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 IGLV5-45A0A087WSX0 123 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 TRBV6-8A0A0A6YYG3 113 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 BPY2O14599 106 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 LECT2O14960 151 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 LIMD2Q9BT23 127 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 Q9H8V8 135 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 CHD7Q9P2D1 2997 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 LOC110117498A0A087WWA1 95 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 A8MU10 97 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 IGFL4Q6B9Z1 124 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 ZNRF1Q8ND25 227 aa5.98□□□□□ -1.45
USP3-211ENST00000559257 MED13Q9UHV7 2174 aa5.97□□□□□ -1.45
USP3-211ENST00000559257 LPAL2Q16609 132 aa5.97□□□□□ -1.45
USP3-211ENST00000559257 SPTSSBQ8NFR3 76 aa5.97□□□□□ -1.45
USP3-211ENST00000559257 SMIM11BQ8TCY0 68 aa5.97□□□□□ -1.45
USP3-211ENST00000559257 OCR1Q9BZK8 76 aa5.97□□□□□ -1.45
USP3-211ENST00000559257 CACNA1EQ15878 2313 aa5.97□□□□□ -1.45
USP3-211ENST00000559257 TRANK1O15050 2925 aa5.97□□□□□ -1.45
USP3-211ENST00000559257 PLXNB1O43157 2135 aa5.97□□□□□ -1.45
USP3-211ENST00000559257 ZFHX3Q15911 3703 aa5.96□□□□□ -1.46
USP3-211ENST00000559257 IGLV5-39A0A0G2JS06 123 aa5.96□□□□□ -1.46
USP3-211ENST00000559257 RPL11P62913 178 aaKnown RBP5.96□□□□□ -1.46
USP3-211ENST00000559257 CHD9Q3L8U1 2897 aa5.96□□□□□ -1.46
USP3-211ENST00000559257 CHKB-CPT1BH3BT56 60 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 LINC01554Q52M75 96 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 Q6ZQT0 140 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 C9orf106Q8NAJ2 232 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 CADP27708 2225 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 SDK2Q58EX2 2172 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 TRBV10-1A0A0K0K1A3 114 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms