RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SRSF9Q13242 221 aaKnown RBP eCLIP5.31□□□□□ -1.56
VPS13C-206ENST00000558338 RRN3P1Q2M238 152 aa5.31□□□□□ -1.56
VPS13C-206ENST00000558338 PLEKHB2Q96CS7 222 aa5.31□□□□□ -1.56
VPS13C-206ENST00000558338 SPANXA1Q9NS26 97 aa5.31□□□□□ -1.56
VPS13C-206ENST00000558338 COL12A1Q99715 3063 aa5.31□□□□□ -1.56
VPS13C-206ENST00000558338 CSPG4Q6UVK1 2322 aa5.31□□□□□ -1.56
VPS13C-206ENST00000558338 SPG11Q96JI7 2443 aa5.31□□□□□ -1.56
VPS13C-206ENST00000558338 IGLV4-3A0A075B6K6 122 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 TRAV26-1A0A087WT03 109 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 J3QQQ9 107 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 P0DMU3 169 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 FAM231AP0DMU4 169 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 FAM231CP0DMU5 169 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 BEAN1Q3B7T3 259 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 A0A0J9YY99 117 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 TMEM223A0PJW6 202 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 F8W1H4 67 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 RS1O15537 224 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 CD28P10747 220 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 HTN1P15515 57 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 RNF151Q2KHN1 245 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 CFAP126Q5VTH2 177 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 ZNRF2Q8NHG8 242 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 VPS25Q9BRG1 176 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 TSSC4Q9Y5U2 329 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-206ENST00000558338 ACACBO00763 2458 aa5.3□□□□□ -1.56
VPS13C-206ENST00000558338 CCL24O00175 119 aa5.29□□□□□ -1.56
VPS13C-206ENST00000558338 IGHV3-53P01767 116 aa5.29□□□□□ -1.56
VPS13C-206ENST00000558338 UBE2D1P51668 147 aa5.29□□□□□ -1.56
VPS13C-206ENST00000558338 EMP1P54849 157 aa5.29□□□□□ -1.56
VPS13C-206ENST00000558338 SLC25A29Q8N8R3 303 aa5.29□□□□□ -1.56
VPS13C-206ENST00000558338 C11orf72Q8NBR9 251 aa5.29□□□□□ -1.56
VPS13C-206ENST00000558338 AMELXQ99217 191 aa5.29□□□□□ -1.56
VPS13C-206ENST00000558338 C16orf95Q9H693 158 aa5.29□□□□□ -1.56
VPS13C-206ENST00000558338 UBR5O95071 2799 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-206ENST00000558338 B5MCH6 92 aa5.28□□□□□ -1.56
VPS13C-206ENST00000558338 TMEM238C9JI98 176 aa5.28□□□□□ -1.56
VPS13C-206ENST00000558338 RNASE1P07998 156 aaKnown RBP5.28□□□□□ -1.56
VPS13C-206ENST00000558338 ZNF22P17026 224 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-206ENST00000558338 SMAGPQ0VAQ4 97 aa5.28□□□□□ -1.56
VPS13C-206ENST00000558338 WFDC11Q8NEX6 87 aa5.28□□□□□ -1.56
VPS13C-206ENST00000558338 MRPL16Q9NX20 251 aaKnown RBP5.28□□□□□ -1.56
VPS13C-206ENST00000558338 AGRNO00468 2067 aa5.28□□□□□ -1.56
VPS13C-206ENST00000558338 IGHV3-73A0A0B4J1V6 119 aa5.28□□□□□ -1.56
VPS13C-206ENST00000558338 J3QR89 54 aa5.28□□□□□ -1.56
VPS13C-206ENST00000558338 MRPS36P82909 103 aaKnown RBP5.28□□□□□ -1.56
VPS13C-206ENST00000558338 ODF3L2Q3SX64 289 aa5.28□□□□□ -1.56
VPS13C-206ENST00000558338 IL17DQ8TAD2 202 aa5.28□□□□□ -1.56
VPS13C-206ENST00000558338 PLA2G2DQ9UNK4 145 aa5.28□□□□□ -1.56
VPS13C-206ENST00000558338 FLNCQ14315 2725 aa5.28□□□□□ -1.56
VPS13C-206ENST00000558338 USP24Q9UPU5 2620 aa5.27□□□□□ -1.57
VPS13C-206ENST00000558338 CELSR1Q9NYQ6 3014 aa5.27□□□□□ -1.57
VPS13C-206ENST00000558338 IGHV3-30P01768 117 aa5.27□□□□□ -1.57
VPS13C-206ENST00000558338 IGHV3-30-5P0DP03 117 aa5.27□□□□□ -1.57
VPS13C-206ENST00000558338 TSPEAR-AS2P59090 65 aa5.27□□□□□ -1.57
VPS13C-206ENST00000558338 DEFB104AQ8WTQ1 72 aa5.27□□□□□ -1.57
VPS13C-206ENST00000558338 TIMM21Q9BVV7 248 aa5.27□□□□□ -1.57
VPS13C-206ENST00000558338 KRTAP9-8Q9BYQ0 159 aa5.27□□□□□ -1.57
VPS13C-206ENST00000558338 MYO18BQ8IUG5 2567 aa5.27□□□□□ -1.57
VPS13C-206ENST00000558338 FBN2P35556 2912 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 A0A0A0MQY5 61 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 A0A0J9YXV3 536 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 TRBV10-1A0A0K0K1A3 114 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 TINCRA0A1B0GVN0 87 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 G3V4G9 280 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 RPL24P83731 157 aaKnown RBP5.26□□□□□ -1.57
VPS13C-206ENST00000558338 ZNF418Q8TF45 676 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-206ENST00000558338 TMEM263Q8WUH6 116 aaKnown RBP5.26□□□□□ -1.57
VPS13C-206ENST00000558338 OPRPNQ99935 248 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-206ENST00000558338 CHCHD7Q9BUK0 85 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 ESM1Q9NQ30 184 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 UBE2D4Q9Y2X8 147 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 DOPEY2Q9Y3R5 2298 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 ZNF462Q96JM2 2506 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-206ENST00000558338 AZU1P20160 251 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 PROK1P58294 105 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 GAGE13Q4V321 117 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 NDUFA11Q86Y39 141 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 C1QTNF4Q9BXJ3 329 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 XCL2Q9UBD3 114 aa5.26□□□□□ -1.57
VPS13C-206ENST00000558338 TRBV20-1A0A075B6N2 111 aa5.25□□□□□ -1.57
VPS13C-206ENST00000558338 TRAV4A0A0B4J268 109 aa5.25□□□□□ -1.57
VPS13C-206ENST00000558338 A0A0B4J2C4 111 aa5.25□□□□□ -1.57
VPS13C-206ENST00000558338 IGHV1-58A0A0C4DH39 117 aa5.25□□□□□ -1.57
VPS13C-206ENST00000558338 NDUFA7O95182 113 aa5.25□□□□□ -1.57
VPS13C-206ENST00000558338 TSPAN13O95857 204 aa5.25□□□□□ -1.57
VPS13C-206ENST00000558338 RPL36AP83881 106 aaKnown RBP5.25□□□□□ -1.57
VPS13C-206ENST00000558338 C10orf126Q8N4M7 172 aa5.25□□□□□ -1.57
VPS13C-206ENST00000558338 RPL36ALQ969Q0 106 aaKnown RBP5.25□□□□□ -1.57
VPS13C-206ENST00000558338 CELSR2Q9HCU4 2923 aa5.25□□□□□ -1.57
VPS13C-206ENST00000558338 FAM208BQ5VWN6 2430 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 NACAE9PAV3 2078 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 TRGV1A0A0A0MS02 117 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 K7EQD1 137 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 APOMO95445 188 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 UBE2D3P61077 147 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 UBE2D2P62837 147 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 KRTAP1-1Q07627 177 aa5.24□□□□□ -1.57
VPS13C-206ENST00000558338 DAZ2Q13117 558 aaKnown RBP5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms