RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 Q6ZSN1 163 aa8.34□□□□□ -1.08
SRP54-213ENST00000556994 USP9YO00507 2555 aaPredicted RBP8.33□□□□□ -1.08
SRP54-213ENST00000556994 MXRA5Q9NR99 2828 aa8.33□□□□□ -1.08
SRP54-213ENST00000556994 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.33□□□□□ -1.08
SRP54-213ENST00000556994 IGKV2-29A2NJV5 120 aaPredicted RBP8.33□□□□□ -1.08
SRP54-213ENST00000556994 CRLF1O75462 422 aa8.33□□□□□ -1.08
SRP54-213ENST00000556994 ZFAND6Q6FIF0 208 aa8.33□□□□□ -1.08
SRP54-213ENST00000556994 TEX29Q8N6K0 151 aa8.33□□□□□ -1.08
SRP54-213ENST00000556994 NRGNQ92686 78 aa8.33□□□□□ -1.08
SRP54-213ENST00000556994 NDUFA12Q9UI09 145 aa8.33□□□□□ -1.08
SRP54-213ENST00000556994 TRGV11A0A075B6L2 103 aa8.32□□□□□ -1.08
SRP54-213ENST00000556994 IGHV3-38A0A0C4DH36 116 aa8.32□□□□□ -1.08
SRP54-213ENST00000556994 MRPS36P82909 103 aaKnown RBP8.32□□□□□ -1.08
SRP54-213ENST00000556994 ANAPC13Q9BS18 74 aa8.32□□□□□ -1.08
SRP54-213ENST00000556994 TNFRSF18Q9Y5U5 241 aa8.32□□□□□ -1.08
SRP54-213ENST00000556994 TRAV4A0A0B4J268 109 aa8.32□□□□□ -1.08
SRP54-213ENST00000556994 DAND5Q8N907 189 aa8.32□□□□□ -1.08
SRP54-213ENST00000556994 MAPK1IP1LQ8NDC0 245 aa8.32□□□□□ -1.08
SRP54-213ENST00000556994 IGHV1-58A0A0C4DH39 117 aa8.31□□□□□ -1.08
SRP54-213ENST00000556994 TRBV30A0A0K0K1B3 111 aa8.31□□□□□ -1.08
SRP54-213ENST00000556994 HOXD3P31249 432 aaPredicted RBP8.31□□□□□ -1.08
SRP54-213ENST00000556994 CFAP46Q8IYW2 2715 aa8.31□□□□□ -1.08
SRP54-213ENST00000556994 DEFB131AP59861 70 aa8.31□□□□□ -1.08
SRP54-213ENST00000556994 DEFB136Q30KP8 78 aa8.31□□□□□ -1.08
SRP54-213ENST00000556994 CLEC2BQ92478 149 aa8.31□□□□□ -1.08
SRP54-213ENST00000556994 PYGO1Q9Y3Y4 419 aa8.31□□□□□ -1.08
SRP54-213ENST00000556994 C18orf65Q6ZTR6 163 aa8.3□□□□□ -1.08
SRP54-213ENST00000556994 DUX3Q96PT4 197 aa8.3□□□□□ -1.08
SRP54-213ENST00000556994 CITED1Q99966 193 aa8.3□□□□□ -1.08
SRP54-213ENST00000556994 ICOSQ9Y6W8 199 aa8.3□□□□□ -1.08
SRP54-213ENST00000556994 POLQO75417 2590 aa8.3□□□□□ -1.08
SRP54-213ENST00000556994 CENPEQ02224 2701 aa8.3□□□□□ -1.08
SRP54-213ENST00000556994 TRBV10-2A0A0K0K1G8 114 aa8.3□□□□□ -1.08
SRP54-213ENST00000556994 B4DSR2 109 aa8.3□□□□□ -1.08
SRP54-213ENST00000556994 HIST2H2BDQ6DRA6 164 aa8.3□□□□□ -1.08
SRP54-213ENST00000556994 VSIG2Q96IQ7 327 aa8.3□□□□□ -1.08
SRP54-213ENST00000556994 CHCHD7Q9BUK0 85 aa8.3□□□□□ -1.08
SRP54-213ENST00000556994 RBMY1BA6NDE4 496 aaKnown RBP8.29□□□□□ -1.08
SRP54-213ENST00000556994 RBMY1EA6NEQ0 496 aaKnown RBP8.29□□□□□ -1.08
SRP54-213ENST00000556994 H7C423 109 aa8.29□□□□□ -1.08
SRP54-213ENST00000556994 M0QXV9 152 aa8.29□□□□□ -1.08
SRP54-213ENST00000556994 SNCGO76070 127 aa8.29□□□□□ -1.08
SRP54-213ENST00000556994 RBMY1DP0C7P1 496 aaKnown RBP8.29□□□□□ -1.08
SRP54-213ENST00000556994 C2orf82Q6UX34 121 aa8.29□□□□□ -1.08
SRP54-213ENST00000556994 UBE2D4Q9Y2X8 147 aa8.29□□□□□ -1.08
SRP54-213ENST00000556994 SLURP1P55000 103 aa8.29□□□□□ -1.08
SRP54-213ENST00000556994 LINC00467Q9BRT7 94 aa8.29□□□□□ -1.08
SRP54-213ENST00000556994 USP9XQ93008 2570 aaPredicted RBP8.28□□□□□ -1.08
SRP54-213ENST00000556994 TRAV8-4A0A0B4J246 113 aa8.28□□□□□ -1.08
SRP54-213ENST00000556994 GAGE2BQ13066 116 aa8.28□□□□□ -1.08
SRP54-213ENST00000556994 MIAQ16674 131 aa8.28□□□□□ -1.08
SRP54-213ENST00000556994 GAGE2EQ4V326 116 aa8.28□□□□□ -1.08
SRP54-213ENST00000556994 GAGE2DQ9UEU5 116 aa8.28□□□□□ -1.08
SRP54-213ENST00000556994 A0A0U1RRA0 63 aa8.28□□□□□ -1.08
SRP54-213ENST00000556994 TINCRA0A1B0GVN0 87 aa8.28□□□□□ -1.08
SRP54-213ENST00000556994 H3BMM0 161 aa8.28□□□□□ -1.08
SRP54-213ENST00000556994 NHLRC4P0CG21 123 aaPredicted RBP8.28□□□□□ -1.08
SRP54-213ENST00000556994 UBE2WQ96B02 151 aa8.28□□□□□ -1.08
SRP54-213ENST00000556994 SPANXDQ9BXN6 97 aa8.28□□□□□ -1.08
SRP54-213ENST00000556994 SPANXCQ9NY87 97 aa8.28□□□□□ -1.08
SRP54-213ENST00000556994 ZNF625Q96I27 306 aaPredicted RBP8.27□□□□□ -1.09
SRP54-213ENST00000556994 CDKN2A-AS1Q9UH64 79 aa8.27□□□□□ -1.09
SRP54-213ENST00000556994 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.26□□□□□ -1.09
SRP54-213ENST00000556994 RPL13AP40429 203 aaKnown RBP8.26□□□□□ -1.09
SRP54-213ENST00000556994 C15orf53Q8NAA6 179 aa8.26□□□□□ -1.09
SRP54-213ENST00000556994 SS18L2Q9UHA2 77 aa8.26□□□□□ -1.09
SRP54-213ENST00000556994 B5MCH6 92 aa8.25□□□□□ -1.09
SRP54-213ENST00000556994 COX6CP09669 75 aa8.25□□□□□ -1.09
SRP54-213ENST00000556994 COX6A2Q02221 97 aa8.25□□□□□ -1.09
SRP54-213ENST00000556994 TMEM61Q8N0U2 210 aa8.25□□□□□ -1.09
SRP54-213ENST00000556994 LINC01587Q99440 93 aa8.25□□□□□ -1.09
SRP54-213ENST00000556994 EDA2RQ9HAV5 297 aa8.25□□□□□ -1.09
SRP54-213ENST00000556994 PKD1L2Q7Z442 2459 aa8.25□□□□□ -1.09
SRP54-213ENST00000556994 NDUFV3P56181 108 aaKnown RBP8.25□□□□□ -1.09
SRP54-213ENST00000556994 TTC32Q5I0X7 151 aa8.25□□□□□ -1.09
SRP54-213ENST00000556994 RNF152Q8N8N0 203 aa8.25□□□□□ -1.09
SRP54-213ENST00000556994 SPANXA1Q9NS26 97 aa8.25□□□□□ -1.09
SRP54-213ENST00000556994 NOTCH3Q9UM47 2321 aa8.24□□□□□ -1.09
SRP54-213ENST00000556994 NDUFA7O95182 113 aa8.24□□□□□ -1.09
SRP54-213ENST00000556994 TMEM101Q96IK0 257 aa8.24□□□□□ -1.09
SRP54-213ENST00000556994 ANKRD17O75179 2603 aaKnown RBP8.24□□□□□ -1.09
SRP54-213ENST00000556994 AKAP9Q99996 3911 aa8.24□□□□□ -1.09
SRP54-213ENST00000556994 MYO9AB2RTY4 2548 aa8.24□□□□□ -1.09
SRP54-213ENST00000556994 TMEM89A2RUT3 159 aa8.24□□□□□ -1.09
SRP54-213ENST00000556994 ZNF415Q09FC8 603 aa8.24□□□□□ -1.09
SRP54-213ENST00000556994 UBE2E2Q96LR5 201 aa8.24□□□□□ -1.09
SRP54-213ENST00000556994 PRORYQ9H606 182 aa8.24□□□□□ -1.09
SRP54-213ENST00000556994 GAGE5Q13069 117 aa8.23□□□□□ -1.09
SRP54-213ENST00000556994 GAGE6Q13070 117 aa8.23□□□□□ -1.09
SRP54-213ENST00000556994 DGAT2L7PQ6IED9 249 aa8.23□□□□□ -1.09
SRP54-213ENST00000556994 CITED2Q99967 270 aaPredicted RBP8.23□□□□□ -1.09
SRP54-213ENST00000556994 ZNF702PQ9H963 129 aa8.23□□□□□ -1.09
SRP54-213ENST00000556994 FBN2P35556 2912 aa8.23□□□□□ -1.09
SRP54-213ENST00000556994 DOPEY1Q5JWR5 2465 aa8.23□□□□□ -1.09
SRP54-213ENST00000556994 LST1O00453 97 aa8.23□□□□□ -1.09
SRP54-213ENST00000556994 C2CD3Q4AC94 2353 aa8.22□□□□□ -1.09
SRP54-213ENST00000556994 TEX15Q9BXT5 2789 aa8.22□□□□□ -1.09
SRP54-213ENST00000556994 CHD6Q8TD26 2715 aa8.22□□□□□ -1.09
SRP54-213ENST00000556994 IGHV3OR16-12A0A075B7B8 117 aa8.22□□□□□ -1.09
SRP54-213ENST00000556994 CCDC179H3BU77 68 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms