RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 CEMP1Q6PRD7 247 aaPredicted RBP8.67□□□□□ -1.02
SYNE2-208ENST00000553289 TMEM223A0PJW6 202 aa8.67□□□□□ -1.02
SYNE2-208ENST00000553289 J3KT08 172 aa8.67□□□□□ -1.02
SYNE2-208ENST00000553289 C11orf71Q6IPW1 123 aa8.66□□□□□ -1.02
SYNE2-208ENST00000553289 YPEL4Q96NS1 127 aa8.66□□□□□ -1.02
SYNE2-208ENST00000553289 FAM208BQ5VWN6 2430 aa8.66□□□□□ -1.02
SYNE2-208ENST00000553289 C20orf173Q96LM9 149 aa8.66□□□□□ -1.02
SYNE2-208ENST00000553289 REG3AQ06141 175 aa8.66□□□□□ -1.02
SYNE2-208ENST00000553289 IGLV4-3A0A075B6K6 122 aa8.66□□□□□ -1.02
SYNE2-208ENST00000553289 DEFB4AO15263 64 aa8.66□□□□□ -1.02
SYNE2-208ENST00000553289 ZNF22P17026 224 aaPredicted RBP8.66□□□□□ -1.02
SYNE2-208ENST00000553289 IBA57-AS1B1ANH7 110 aa8.65□□□□□ -1.02
SYNE2-208ENST00000553289 SRCAPQ6ZRS2 3230 aa8.65□□□□□ -1.02
SYNE2-208ENST00000553289 TRBV6-5A0A0K0K1A5 114 aa8.65□□□□□ -1.02
SYNE2-208ENST00000553289 LINC00467Q9BRT7 94 aa8.65□□□□□ -1.02
SYNE2-208ENST00000553289 ZFHX2Q9C0A1 2572 aaPredicted RBP8.65□□□□□ -1.03
SYNE2-208ENST00000553289 ANKHD1Q8IWZ3 2542 aaKnown RBP8.65□□□□□ -1.03
SYNE2-208ENST00000553289 CHKB-CPT1BH3BT56 60 aa8.65□□□□□ -1.03
SYNE2-208ENST00000553289 P0DMU3 169 aa8.65□□□□□ -1.03
SYNE2-208ENST00000553289 FAM231AP0DMU4 169 aa8.65□□□□□ -1.03
SYNE2-208ENST00000553289 FAM231CP0DMU5 169 aa8.65□□□□□ -1.03
SYNE2-208ENST00000553289 PYGO1Q9Y3Y4 419 aa8.65□□□□□ -1.03
SYNE2-208ENST00000553289 COL4A4P53420 1690 aaPredicted RBP8.65□□□□□ -1.03
SYNE2-208ENST00000553289 M0QY20 66 aa8.64□□□□□ -1.03
SYNE2-208ENST00000553289 PLCE1Q9P212 2302 aa8.64□□□□□ -1.03
SYNE2-208ENST00000553289 ALPK3Q96L96 1907 aa8.64□□□□□ -1.03
SYNE2-208ENST00000553289 C19orf84I3L1E1 186 aa8.64□□□□□ -1.03
SYNE2-208ENST00000553289 WFDC9Q8NEX5 89 aa8.64□□□□□ -1.03
SYNE2-208ENST00000553289 TRBV6-4A0A1B0GX49 114 aa8.64□□□□□ -1.03
SYNE2-208ENST00000553289 CRIP1P50238 77 aa8.64□□□□□ -1.03
SYNE2-208ENST00000553289 C22orf34Q6ZV56 151 aa8.64□□□□□ -1.03
SYNE2-208ENST00000553289 PTPRQQ9UMZ3 2332 aa8.64□□□□□ -1.03
SYNE2-208ENST00000553289 C11orf45Q8TAV5 145 aa8.64□□□□□ -1.03
SYNE2-208ENST00000553289 B9D2Q9BPU9 175 aa8.64□□□□□ -1.03
SYNE2-208ENST00000553289 MUC6Q6W4X9 2439 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 RNF185Q96GF1 192 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 CDKN2A-AS1Q9UH64 79 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 TRBV27A0A0K0K1C4 114 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 ATP5EP2Q5VTU8 51 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 LINC00269Q8N2A0 174 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 TRAV26-1A0A087WT03 109 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 Q8N6K4 173 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 NDUFC2O95298 119 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 FAM222AQ5U5X8 452 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 CFAP126Q5VTH2 177 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 PTH2Q96A98 100 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 PRO3102Q9H379 93 aa8.63□□□□□ -1.03
SYNE2-208ENST00000553289 TNRC6BQ9UPQ9 1833 aaKnown RBP8.63□□□□□ -1.03
SYNE2-208ENST00000553289 CHCHD10Q8WYQ3 142 aaPredicted RBP8.62□□□□□ -1.03
SYNE2-208ENST00000553289 C14orf132Q9NPU4 83 aa8.62□□□□□ -1.03
SYNE2-208ENST00000553289 IGLV2-11P01706 119 aa8.62□□□□□ -1.03
SYNE2-208ENST00000553289 TIMM17BO60830 172 aa8.62□□□□□ -1.03
SYNE2-208ENST00000553289 C4orf48Q5BLP8 95 aa8.62□□□□□ -1.03
SYNE2-208ENST00000553289 NUP210LQ5VU65 1888 aa8.62□□□□□ -1.03
SYNE2-208ENST00000553289 TRBV30A0A0K0K1B3 111 aa8.61□□□□□ -1.03
SYNE2-208ENST00000553289 MIFP14174 115 aa8.61□□□□□ -1.03
SYNE2-208ENST00000553289 LINC00308Q8TCZ7 52 aa8.61□□□□□ -1.03
SYNE2-208ENST00000553289 PSMG3-AS1Q96PY0 264 aa8.61□□□□□ -1.03
SYNE2-208ENST00000553289 TRBV6-8A0A0A6YYG3 113 aa8.6□□□□□ -1.03
SYNE2-208ENST00000553289 TP73-AS1Q9UF72 201 aa8.6□□□□□ -1.03
SYNE2-208ENST00000553289 BPY2O14599 106 aa8.6□□□□□ -1.03
SYNE2-208ENST00000553289 PLA2G5P39877 138 aa8.59□□□□□ -1.03
SYNE2-208ENST00000553289 C5orf47Q569G3 176 aa8.59□□□□□ -1.03
SYNE2-208ENST00000553289 Q6ZSV7 163 aa8.59□□□□□ -1.03
SYNE2-208ENST00000553289 IGKV2D-26A0A0A0MRZ7 120 aa8.59□□□□□ -1.03
SYNE2-208ENST00000553289 SPATA25Q9BR10 227 aa8.59□□□□□ -1.04
SYNE2-208ENST00000553289 UPK3BQ9BT76 320 aa8.58□□□□□ -1.04
SYNE2-208ENST00000553289 MED12LQ86YW9 2145 aa8.58□□□□□ -1.04
SYNE2-208ENST00000553289 C10orf142B7Z368 130 aa8.58□□□□□ -1.04
SYNE2-208ENST00000553289 ACACBO00763 2458 aa8.58□□□□□ -1.04
SYNE2-208ENST00000553289 HILS1P60008 231 aa8.58□□□□□ -1.04
SYNE2-208ENST00000553289 PIK3CD-AS1Q5SR53 167 aa8.58□□□□□ -1.04
SYNE2-208ENST00000553289 KLLNB2CW77 178 aa8.57□□□□□ -1.04
SYNE2-208ENST00000553289 NRACQ8N912 160 aa8.57□□□□□ -1.04
SYNE2-208ENST00000553289 MUC22E2RYF6 1773 aaPredicted RBP8.57□□□□□ -1.04
SYNE2-208ENST00000553289 ARHGAP21Q5T5U3 1957 aa8.57□□□□□ -1.04
SYNE2-208ENST00000553289 MAPKAPK5-AS1Q8N8E1 139 aa8.57□□□□□ -1.04
SYNE2-208ENST00000553289 HIVEP2P31629 2446 aa8.57□□□□□ -1.04
SYNE2-208ENST00000553289 KIR2DL5BQ8NHK3 375 aa8.57□□□□□ -1.04
SYNE2-208ENST00000553289 CRYGDP07320 174 aa8.56□□□□□ -1.04
SYNE2-208ENST00000553289 H0Y9J4 135 aa8.56□□□□□ -1.04
SYNE2-208ENST00000553289 RNASE3P12724 160 aaKnown RBP8.56□□□□□ -1.04
SYNE2-208ENST00000553289 MRPS36P82909 103 aaKnown RBP8.56□□□□□ -1.04
SYNE2-208ENST00000553289 PCDH15Q96QU1 1955 aa8.56□□□□□ -1.04
SYNE2-208ENST00000553289 DEFB131BA0A096LNP1 70 aa8.56□□□□□ -1.04
SYNE2-208ENST00000553289 TEX49A0A1B0GTD5 131 aa8.56□□□□□ -1.04
SYNE2-208ENST00000553289 UQCRQO14949 82 aa8.56□□□□□ -1.04
SYNE2-208ENST00000553289 TRIAP1O43715 76 aa8.56□□□□□ -1.04
SYNE2-208ENST00000553289 WFDC11Q8NEX6 87 aa8.56□□□□□ -1.04
SYNE2-208ENST00000553289 FAM110AQ9BQ89 295 aa8.56□□□□□ -1.04
SYNE2-208ENST00000553289 ZNF702PQ9H963 129 aa8.56□□□□□ -1.04
SYNE2-208ENST00000553289 NDUFV3P56181 108 aaKnown RBP8.55□□□□□ -1.04
SYNE2-208ENST00000553289 TSHBP01222 138 aa8.55□□□□□ -1.04
SYNE2-208ENST00000553289 CNFNQ9BYD5 112 aa8.55□□□□□ -1.04
SYNE2-208ENST00000553289 IGLV1-40P01703 118 aa8.55□□□□□ -1.04
SYNE2-208ENST00000553289 C9orf85Q96MD7 179 aa8.55□□□□□ -1.04
SYNE2-208ENST00000553289 TNCP24821 2201 aa8.55□□□□□ -1.04
SYNE2-208ENST00000553289 MRGPRG-AS1Q2M3A8 158 aa8.54□□□□□ -1.04
SYNE2-208ENST00000553289 GOLGB1Q14789 3259 aaKnown RBP8.54□□□□□ -1.04
SYNE2-208ENST00000553289 SHISA2Q6UWI4 295 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms