RNA–Protein interactions for RNA: ENST00000548938.5

HDAC7-228, Transcript of histone deacetylase 7, humanhuman

TSL 5

Gene HDAC7, Length 2,719 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-228ENST00000548938 TRBV30A0A0K0K1B3 111 aa10.1□□□□□ -0.79
HDAC7-228ENST00000548938 CD28P10747 220 aa10.1□□□□□ -0.79
HDAC7-228ENST00000548938 RPL13AP40429 203 aaKnown RBP10.1□□□□□ -0.79
HDAC7-228ENST00000548938 RNASE13Q5GAN3 156 aaKnown RBP10.1□□□□□ -0.79
HDAC7-228ENST00000548938 ADAMTSL4-AS1Q5T5F5 129 aa10.1□□□□□ -0.79
HDAC7-228ENST00000548938 CEMP1Q6PRD7 247 aaPredicted RBP10.1□□□□□ -0.79
HDAC7-228ENST00000548938 Q6ZSV7 163 aa10.1□□□□□ -0.79
HDAC7-228ENST00000548938 FAM104AQ969W3 186 aa10.1□□□□□ -0.79
HDAC7-228ENST00000548938 A6NDX4 124 aa10.1□□□□□ -0.79
HDAC7-228ENST00000548938 TRAV8-4A0A0B4J246 113 aa10.09□□□□□ -0.79
HDAC7-228ENST00000548938 H3BMM0 161 aa10.09□□□□□ -0.79
HDAC7-228ENST00000548938 NPC2P61916 151 aa10.09□□□□□ -0.79
HDAC7-228ENST00000548938 UBE2WQ96B02 151 aa10.09□□□□□ -0.79
HDAC7-228ENST00000548938 IGHV4-61A0A0C4DH41 118 aa10.09□□□□□ -0.79
HDAC7-228ENST00000548938 ATP5J2P56134 94 aa10.09□□□□□ -0.79
HDAC7-228ENST00000548938 ICOSQ9Y6W8 199 aa10.09□□□□□ -0.79
HDAC7-228ENST00000548938 IGHV3-73A0A0B4J1V6 119 aa10.08□□□□□ -0.8
HDAC7-228ENST00000548938 K7EMT4 169 aa10.08□□□□□ -0.8
HDAC7-228ENST00000548938 C10orf105Q8TEF2 133 aa10.08□□□□□ -0.8
HDAC7-228ENST00000548938 NRGNQ92686 78 aa10.08□□□□□ -0.8
HDAC7-228ENST00000548938 LINC01600Q96MT4 127 aa10.08□□□□□ -0.8
HDAC7-228ENST00000548938 PRRC2AP48634 2157 aaKnown RBP10.08□□□□□ -0.8
HDAC7-228ENST00000548938 A8MZ25 164 aa10.08□□□□□ -0.8
HDAC7-228ENST00000548938 PIMREGQ9BSJ6 248 aa10.08□□□□□ -0.8
HDAC7-228ENST00000548938 POLQO75417 2590 aa10.08□□□□□ -0.8
HDAC7-228ENST00000548938 C2orf82Q6UX34 121 aa10.07□□□□□ -0.8
HDAC7-228ENST00000548938 C15orf53Q8NAA6 179 aa10.07□□□□□ -0.8
HDAC7-228ENST00000548938 SORL1Q92673 2214 aa10.07□□□□□ -0.8
HDAC7-228ENST00000548938 PTPN13Q12923 2485 aa10.07□□□□□ -0.8
HDAC7-228ENST00000548938 H7C423 109 aa10.07□□□□□ -0.8
HDAC7-228ENST00000548938 PROK1P58294 105 aa10.07□□□□□ -0.8
HDAC7-228ENST00000548938 MRPS36P82909 103 aaKnown RBP10.07□□□□□ -0.8
HDAC7-228ENST00000548938 CFHR3Q02985 330 aa10.07□□□□□ -0.8
HDAC7-228ENST00000548938 NDUFA12Q9UI09 145 aa10.07□□□□□ -0.8
HDAC7-228ENST00000548938 DOPEY2Q9Y3R5 2298 aa10.07□□□□□ -0.8
HDAC7-228ENST00000548938 CCDC179H3BU77 68 aa10.06□□□□□ -0.8
HDAC7-228ENST00000548938 CLEC2BQ92478 149 aa10.06□□□□□ -0.8
HDAC7-228ENST00000548938 FBN2P35556 2912 aa10.06□□□□□ -0.8
HDAC7-228ENST00000548938 IGHV4-30-2A0A087WSY4 118 aa10.06□□□□□ -0.8
HDAC7-228ENST00000548938 SNRPD3P62318 126 aaKnown RBP10.06□□□□□ -0.8
HDAC7-228ENST00000548938 TTC32Q5I0X7 151 aa10.06□□□□□ -0.8
HDAC7-228ENST00000548938 USP9YO00507 2555 aaPredicted RBP10.06□□□□□ -0.8
HDAC7-228ENST00000548938 IGHV1-58A0A0C4DH39 117 aa10.06□□□□□ -0.8
HDAC7-228ENST00000548938 IFITM1P13164 125 aa10.06□□□□□ -0.8
HDAC7-228ENST00000548938 SPANXDQ9BXN6 97 aa10.06□□□□□ -0.8
HDAC7-228ENST00000548938 SPANXCQ9NY87 97 aa10.06□□□□□ -0.8
HDAC7-228ENST00000548938 PYGO1Q9Y3Y4 419 aa10.06□□□□□ -0.8
HDAC7-228ENST00000548938 MIAQ16674 131 aa10.05□□□□□ -0.8
HDAC7-228ENST00000548938 C10orf99Q6UWK7 81 aa10.05□□□□□ -0.8
HDAC7-228ENST00000548938 K7EQG2 157 aa10.05□□□□□ -0.8
HDAC7-228ENST00000548938 Q9UF83 564 aa10.05□□□□□ -0.8
HDAC7-228ENST00000548938 HTN1P15515 57 aa10.04□□□□□ -0.8
HDAC7-228ENST00000548938 Q6Q795 121 aa10.04□□□□□ -0.8
HDAC7-228ENST00000548938 GAGE12JA6NER3 117 aa10.04□□□□□ -0.8
HDAC7-228ENST00000548938 GAGE7O76087 117 aa10.04□□□□□ -0.8
HDAC7-228ENST00000548938 GAGE12FP0CL80 117 aa10.04□□□□□ -0.8
HDAC7-228ENST00000548938 GAGE12GP0CL81 117 aa10.04□□□□□ -0.8
HDAC7-228ENST00000548938 GAGE12IP0CL82 117 aa10.04□□□□□ -0.8
HDAC7-228ENST00000548938 RBMY1A1P0DJD3 496 aaKnown RBP10.04□□□□□ -0.8
HDAC7-228ENST00000548938 RBMY1CP0DJD4 496 aa10.04□□□□□ -0.8
HDAC7-228ENST00000548938 GAGE4Q13068 117 aa10.04□□□□□ -0.8
HDAC7-228ENST00000548938 RBMY1FQ15415 496 aaKnown RBP10.04□□□□□ -0.8
HDAC7-228ENST00000548938 VSIG2Q96IQ7 327 aa10.04□□□□□ -0.8
HDAC7-228ENST00000548938 CHD6Q8TD26 2715 aa10.03□□□□□ -0.8
HDAC7-228ENST00000548938 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.03□□□□□ -0.82e-7■■■■□ 21.7
HDAC7-228ENST00000548938 KNCNA6PVL3 124 aa10.03□□□□□ -0.8
HDAC7-228ENST00000548938 H3BT86 120 aa10.03□□□□□ -0.8
HDAC7-228ENST00000548938 TMEM61Q8N0U2 210 aa10.03□□□□□ -0.8
HDAC7-228ENST00000548938 DAND5Q8N907 189 aa10.03□□□□□ -0.8
HDAC7-228ENST00000548938 ABCA12Q86UK0 2595 aa10.02□□□□□ -0.8
HDAC7-228ENST00000548938 TRGV11A0A075B6L2 103 aa10.02□□□□□ -0.81
HDAC7-228ENST00000548938 COX6CP09669 75 aa10.02□□□□□ -0.81
HDAC7-228ENST00000548938 CREBBPQ92793 2442 aa10.02□□□□□ -0.81
HDAC7-228ENST00000548938 PRM2P04554 102 aa10.02□□□□□ -0.81
HDAC7-228ENST00000548938 PSMB8P28062 276 aa10.02□□□□□ -0.81
HDAC7-228ENST00000548938 LST1O00453 97 aa10.01□□□□□ -0.81
HDAC7-228ENST00000548938 DUX3Q96PT4 197 aa10.01□□□□□ -0.81
HDAC7-228ENST00000548938 ANKRD17O75179 2603 aaKnown RBP10.01□□□□□ -0.81
HDAC7-228ENST00000548938 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.01□□□□□ -0.81
HDAC7-228ENST00000548938 IGKV2-29A2NJV5 120 aaPredicted RBP10.01□□□□□ -0.81
HDAC7-228ENST00000548938 SMIM20Q8N5G0 67 aa10.01□□□□□ -0.81
HDAC7-228ENST00000548938 YAE1D1Q9NRH1 226 aa10.01□□□□□ -0.81
HDAC7-228ENST00000548938 TINCRA0A1B0GVN0 87 aa10□□□□□ -0.81
HDAC7-228ENST00000548938 SYNJ2BPP57105 145 aa10□□□□□ -0.81
HDAC7-228ENST00000548938 DUX5Q96PT3 197 aa10□□□□□ -0.81
HDAC7-228ENST00000548938 CSPG4Q6UVK1 2322 aa10□□□□□ -0.81
HDAC7-228ENST00000548938 Q6ZSN1 163 aa10□□□□□ -0.81
HDAC7-228ENST00000548938 CHCHD7Q9BUK0 85 aa10□□□□□ -0.81
HDAC7-228ENST00000548938 UBE2D4Q9Y2X8 147 aa10□□□□□ -0.81
HDAC7-228ENST00000548938 NAV2Q8IVL1 2488 aa10□□□□□ -0.81
HDAC7-228ENST00000548938 EDA2RQ9HAV5 297 aa9.99□□□□□ -0.81
HDAC7-228ENST00000548938 LINC00467Q9BRT7 94 aa9.98□□□□□ -0.81
HDAC7-228ENST00000548938 MSMBP08118 114 aa9.98□□□□□ -0.81
HDAC7-228ENST00000548938 NACAE9PAV3 2078 aa9.98□□□□□ -0.81
HDAC7-228ENST00000548938 IGHV3-38A0A0C4DH36 116 aa9.98□□□□□ -0.81
HDAC7-228ENST00000548938 AVPP01185 164 aa9.98□□□□□ -0.81
HDAC7-228ENST00000548938 KRTAP10-9P60411 292 aa9.98□□□□□ -0.81
HDAC7-228ENST00000548938 SPANXA1Q9NS26 97 aa9.98□□□□□ -0.81
HDAC7-228ENST00000548938 CDKN2A-AS1Q9UH64 79 aa9.98□□□□□ -0.81
HDAC7-228ENST00000548938 DSCR9P59020 149 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 278 ms