RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 CARD19Q96LW7 228 aa11.55□□□□□ -0.56
LDLR-204ENST00000545707 ZNF469Q96JG9 3925 aaPredicted RBP11.54□□□□□ -0.56
LDLR-204ENST00000545707 DSCR9P59020 149 aa11.54□□□□□ -0.56
LDLR-204ENST00000545707 IGHV3-38A0A0C4DH36 116 aa11.54□□□□□ -0.56
LDLR-204ENST00000545707 H3BMM0 161 aa11.54□□□□□ -0.56
LDLR-204ENST00000545707 PRB1P04280 392 aa11.53□□□□□ -0.56
LDLR-204ENST00000545707 IGHV3-30-3P0DP02 117 aa11.53□□□□□ -0.56
LDLR-204ENST00000545707 Q6YL49 198 aa11.53□□□□□ -0.56
LDLR-204ENST00000545707 TMEM61Q8N0U2 210 aa11.53□□□□□ -0.56
LDLR-204ENST00000545707 TNFRSF18Q9Y5U5 241 aa11.53□□□□□ -0.56
LDLR-204ENST00000545707 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.52□□□□□ -0.56
LDLR-204ENST00000545707 IGKV2-29A2NJV5 120 aaPredicted RBP11.52□□□□□ -0.56
LDLR-204ENST00000545707 KHDC1LQ5JSQ8 128 aa11.52□□□□□ -0.56
LDLR-204ENST00000545707 A0A0J9YXY3 114 aa11.52□□□□□ -0.57
LDLR-204ENST00000545707 TMEM263Q8WUH6 116 aaKnown RBP11.52□□□□□ -0.57
LDLR-204ENST00000545707 IGHV3-33P01772 117 aa11.51□□□□□ -0.57
LDLR-204ENST00000545707 CDIP1Q9H305 208 aa11.51□□□□□ -0.57
LDLR-204ENST00000545707 AKAP9Q99996 3911 aa11.51□□□□□ -0.57
LDLR-204ENST00000545707 NPC2P61916 151 aa11.51□□□□□ -0.57
LDLR-204ENST00000545707 TIMM21Q9BVV7 248 aa11.51□□□□□ -0.57
LDLR-204ENST00000545707 SONP18583 2426 aaKnown RBP11.51□□□□□ -0.57
LDLR-204ENST00000545707 SETD2Q9BYW2 2564 aaPredicted RBP11.51□□□□□ -0.57
LDLR-204ENST00000545707 PRSS2P07478 247 aa11.5□□□□□ -0.57
LDLR-204ENST00000545707 KRTAP10-9P60411 292 aa11.5□□□□□ -0.57
LDLR-204ENST00000545707 LYRM7Q5U5X0 104 aa11.5□□□□□ -0.57
LDLR-204ENST00000545707 NOTCH3Q9UM47 2321 aa11.5□□□□□ -0.57
LDLR-204ENST00000545707 TRBV20-1A0A075B6N2 111 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 J3QLI3 93 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 M0R2P5 195 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 ADAMTSL4-AS1Q5T5F5 129 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 TEN1Q86WV5 123 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 RNF152Q8N8N0 203 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 ATP6V0E2Q8NHE4 81 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 LINC01587Q99440 93 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 ERG28Q9UKR5 140 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 NACAE9PAV3 2078 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 A8MWV9 139 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 SPINK8P0C7L1 97 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 IGHV4-31P0DP07 118 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 Q1RN00 199 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 ANKRD29Q8N6D5 301 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 WNK1Q9H4A3 2382 aa11.49□□□□□ -0.57
LDLR-204ENST00000545707 PRRC2AP48634 2157 aaKnown RBP11.48□□□□□ -0.57
LDLR-204ENST00000545707 C9JAW5 83 aa11.48□□□□□ -0.57
LDLR-204ENST00000545707 MRPS36P82909 103 aaKnown RBP11.48□□□□□ -0.57
LDLR-204ENST00000545707 CHCHD7Q9BUK0 85 aa11.48□□□□□ -0.57
LDLR-204ENST00000545707 PYGO1Q9Y3Y4 419 aa11.48□□□□□ -0.57
LDLR-204ENST00000545707 Q6ZSV7 163 aa11.48□□□□□ -0.57
LDLR-204ENST00000545707 MT-ATP8P03928 68 aa11.47□□□□□ -0.57
LDLR-204ENST00000545707 Q6ZUT4 128 aa11.47□□□□□ -0.57
LDLR-204ENST00000545707 PPDPFLQ8WWR9 84 aa11.47□□□□□ -0.57
LDLR-204ENST00000545707 LITAFQ99732 161 aa11.47□□□□□ -0.57
LDLR-204ENST00000545707 LINC00467Q9BRT7 94 aa11.47□□□□□ -0.57
LDLR-204ENST00000545707 FSHBP01225 129 aa11.47□□□□□ -0.57
LDLR-204ENST00000545707 SCGB1A1P11684 91 aa11.47□□□□□ -0.57
LDLR-204ENST00000545707 MAP6D1Q9H9H5 199 aa11.47□□□□□ -0.57
LDLR-204ENST00000545707 SBSPONQ8IVN8 264 aa11.46□□□□□ -0.57
LDLR-204ENST00000545707 NDUFA12Q9UI09 145 aa11.46□□□□□ -0.57
LDLR-204ENST00000545707 UBE2D4Q9Y2X8 147 aa11.46□□□□□ -0.57
LDLR-204ENST00000545707 C2CD3Q4AC94 2353 aa11.46□□□□□ -0.58
LDLR-204ENST00000545707 IGHV3OR16-12A0A075B7B8 117 aa11.46□□□□□ -0.58
LDLR-204ENST00000545707 SLC25A20O43772 301 aa11.46□□□□□ -0.58
LDLR-204ENST00000545707 ZNF415Q09FC8 603 aa11.46□□□□□ -0.58
LDLR-204ENST00000545707 XGP55808 180 aa11.45□□□□□ -0.58
LDLR-204ENST00000545707 Q5PR19 223 aa11.45□□□□□ -0.58
LDLR-204ENST00000545707 C11orf44Q8N8P7 122 aa11.45□□□□□ -0.58
LDLR-204ENST00000545707 XCL2Q9UBD3 114 aa11.45□□□□□ -0.58
LDLR-204ENST00000545707 A0A0B4J2C4 111 aa11.45□□□□□ -0.58
LDLR-204ENST00000545707 IGHV1-58A0A0C4DH39 117 aa11.45□□□□□ -0.58
LDLR-204ENST00000545707 C11orf72Q8NBR9 251 aa11.45□□□□□ -0.58
LDLR-204ENST00000545707 DYNLRB2Q8TF09 96 aa11.45□□□□□ -0.58
LDLR-204ENST00000545707 EDA2RQ9HAV5 297 aa11.45□□□□□ -0.58
LDLR-204ENST00000545707 DAND5Q8N907 189 aa11.44□□□□□ -0.58
LDLR-204ENST00000545707 USP24Q9UPU5 2620 aa11.44□□□□□ -0.58
LDLR-204ENST00000545707 A8MTW9 85 aa11.44□□□□□ -0.58
LDLR-204ENST00000545707 NBPF19A0A087WUL8 3843 aa11.43□□□□□ -0.58
LDLR-204ENST00000545707 VSIG2Q96IQ7 327 aa11.43□□□□□ -0.58
LDLR-204ENST00000545707 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.43□□□□□ -0.58
LDLR-204ENST00000545707 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.43□□□□□ -0.58
LDLR-204ENST00000545707 CDKN2A-AS1Q9UH64 79 aa11.43□□□□□ -0.58
LDLR-204ENST00000545707 JMJD1CQ15652 2540 aa11.42□□□□□ -0.58
LDLR-204ENST00000545707 TRIAP1O43715 76 aa11.42□□□□□ -0.58
LDLR-204ENST00000545707 DEFB114Q30KQ6 69 aa11.42□□□□□ -0.58
LDLR-204ENST00000545707 PEMTQ9UBM1 199 aa11.42□□□□□ -0.58
LDLR-204ENST00000545707 UBR5O95071 2799 aaPredicted RBP11.42□□□□□ -0.58
LDLR-204ENST00000545707 CCDC168Q8NDH2 2452 aa11.42□□□□□ -0.58
LDLR-204ENST00000545707 TINCRA0A1B0GVN0 87 aa11.41□□□□□ -0.58
LDLR-204ENST00000545707 CR1P17927 2039 aa11.41□□□□□ -0.58
LDLR-204ENST00000545707 IGHV3-53P01767 116 aa11.41□□□□□ -0.58
LDLR-204ENST00000545707 GEMIN7Q9H840 131 aaKnown RBP11.41□□□□□ -0.58
LDLR-204ENST00000545707 APCP25054 2843 aa11.41□□□□□ -0.58
LDLR-204ENST00000545707 A0A1W2PRX2 142 aa11.4□□□□□ -0.58
LDLR-204ENST00000545707 NDUFA7O95182 113 aa11.4□□□□□ -0.58
LDLR-204ENST00000545707 CRYBA4P53673 196 aa11.4□□□□□ -0.58
LDLR-204ENST00000545707 SPANXA1Q9NS26 97 aa11.4□□□□□ -0.58
LDLR-204ENST00000545707 COX6A2Q02221 97 aa11.4□□□□□ -0.58
LDLR-204ENST00000545707 CKS1BP61024 79 aa11.39□□□□□ -0.59
LDLR-204ENST00000545707 NTN5Q8WTR8 489 aaPredicted RBP11.39□□□□□ -0.59
LDLR-204ENST00000545707 C4orf3Q8WVX3 66 aa11.39□□□□□ -0.59
LDLR-204ENST00000545707 A0A0U1RRA0 63 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms