RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 DEFB130AP0DP74 79 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 MIAQ16674 131 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 TRBV30A0A0K0K1B3 111 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 M0QY20 66 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 COX7A2LO14548 114 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 NXPH4O95158 308 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 WFDC9Q8NEX5 89 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 C9orf85Q96MD7 179 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 TRBV6-5A0A0K0K1A5 114 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 TMEM223A0PJW6 202 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 CFAP126Q5VTH2 177 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 TEX49A0A1B0GTD5 131 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 SERP2Q8N6R1 65 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 FAM110AQ9BQ89 295 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 DNAJC9-AS1A6NH13 148 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 IGLV2-18A0A075B6J9 118 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 COX7CP15954 63 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 EDN2P20800 178 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 UFSP1Q6NVU6 142 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 NFE4Q86UQ8 179 aa4.3□□□□□ -1.72
VPS50-220ENST00000544910 TRBV7-3A0A075B6L6 115 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 TRAV4A0A0B4J268 109 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 TRBV27A0A0K0K1C4 114 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 NREPQ16612 68 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 ZNF580Q9UK33 172 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 TRANK1O15050 2925 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 HHLA3Q9XRX5 114 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 CCDC179H3BU77 68 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 TSHBP01222 138 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 COX7B2Q8TF08 81 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 J3QKU1 62 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 AVPP01185 164 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 MRPS36P82909 103 aaKnown RBP4.29□□□□□ -1.72
VPS50-220ENST00000544910 HIST2H2BCQ6DN03 193 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 HIST2H2BDQ6DRA6 164 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 UPK3BQ9BT76 320 aa4.29□□□□□ -1.72
VPS50-220ENST00000544910 PTPRZ1P23471 2315 aaPredicted RBP4.29□□□□□ -1.72
VPS50-220ENST00000544910 IGLV4-3A0A075B6K6 122 aa4.28□□□□□ -1.72
VPS50-220ENST00000544910 A0A0J9YXY3 114 aa4.28□□□□□ -1.72
VPS50-220ENST00000544910 LECT2O14960 151 aa4.28□□□□□ -1.72
VPS50-220ENST00000544910 XGP55808 180 aa4.28□□□□□ -1.72
VPS50-220ENST00000544910 TMEM263Q8WUH6 116 aaKnown RBP4.28□□□□□ -1.72
VPS50-220ENST00000544910 DEFB114Q30KQ6 69 aa4.28□□□□□ -1.72
VPS50-220ENST00000544910 C20orf197Q8N268 126 aa4.28□□□□□ -1.72
VPS50-220ENST00000544910 TPRP12270 2363 aaKnown RBP4.28□□□□□ -1.72
VPS50-220ENST00000544910 IGHV3-30-3P0DP02 117 aa4.28□□□□□ -1.72
VPS50-220ENST00000544910 APOC4P55056 127 aa4.28□□□□□ -1.72
VPS50-220ENST00000544910 RPL18AQ02543 176 aaKnown RBP4.28□□□□□ -1.72
VPS50-220ENST00000544910 CEMP1Q6PRD7 247 aaPredicted RBP4.28□□□□□ -1.72
VPS50-220ENST00000544910 SMIM9A6NGZ8 99 aa4.28□□□□□ -1.72
VPS50-220ENST00000544910 POLR2KP53803 58 aaKnown RBP4.28□□□□□ -1.72
VPS50-220ENST00000544910 DAD1P61803 113 aa4.28□□□□□ -1.72
VPS50-220ENST00000544910 ZNF22P17026 224 aaPredicted RBP4.28□□□□□ -1.72
VPS50-220ENST00000544910 A0A0J9YY99 117 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 F5H768 121 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 M0QXV9 152 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 KLK9Q2XQG4 91 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 C18orf65Q6ZTR6 163 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 PKIGQ9Y2B9 76 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 MKI67P46013 3256 aaKnown RBP4.27□□□□□ -1.73
VPS50-220ENST00000544910 C1orf195Q5TG92 126 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 TRAV23DV6A0A075B6W5 121 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 ZNF843Q8N446 348 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 LINC00467Q9BRT7 94 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 C14orf132Q9NPU4 83 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 PYGO1Q9Y3Y4 419 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 EP300Q09472 2414 aaPredicted RBP4.27□□□□□ -1.73
VPS50-220ENST00000544910 MAP1BP46821 2468 aaKnown RBP4.27□□□□□ -1.73
VPS50-220ENST00000544910 PKDREJQ9NTG1 2253 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 IGHV3-30P01768 117 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 IGHV3-33P01772 117 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 CRYGDP07320 174 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 IGHV3-30-5P0DP03 117 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 CACNA1GO43497 2377 aa4.27□□□□□ -1.73
VPS50-220ENST00000544910 IGLV4-69A0A075B6H9 119 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 SDIM1Q6ZPB5 146 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 FAM19A4Q96LR4 140 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 IGIPA6NJ69 53 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 PROK1P58294 105 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 TRBV10-1A0A0K0K1A3 114 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 HIGD2BQ4VC39 106 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 SMIM26A0A096LP01 95 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 LYRM9A8MSI8 78 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 DAND5Q8N907 189 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 RP1L1Q8IWN7 2480 aaPredicted RBP4.26□□□□□ -1.73
VPS50-220ENST00000544910 LINC00694P0DN24 101 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 Q6ZSV7 163 aa4.26□□□□□ -1.73
VPS50-220ENST00000544910 TRIAP1O43715 76 aa4.25□□□□□ -1.73
VPS50-220ENST00000544910 C9orf66Q5T8R8 295 aa4.25□□□□□ -1.73
VPS50-220ENST00000544910 LINC00526Q96FQ7 95 aa4.25□□□□□ -1.73
VPS50-220ENST00000544910 TIMM17BO60830 172 aa4.25□□□□□ -1.73
VPS50-220ENST00000544910 A0A096LPF7 62 aa4.25□□□□□ -1.73
VPS50-220ENST00000544910 USP17L23D6RBM5 183 aa4.25□□□□□ -1.73
VPS50-220ENST00000544910 UBE2D4Q9Y2X8 147 aa4.25□□□□□ -1.73
VPS50-220ENST00000544910 DSCAML1Q8TD84 2053 aa4.25□□□□□ -1.73
VPS50-220ENST00000544910 A0A0U1RQV1 116 aa4.24□□□□□ -1.73
VPS50-220ENST00000544910 H7C423 109 aa4.24□□□□□ -1.73
VPS50-220ENST00000544910 GYPEP15421 78 aa4.24□□□□□ -1.73
VPS50-220ENST00000544910 XCL1P47992 114 aa4.24□□□□□ -1.73
VPS50-220ENST00000544910 PIK3CD-AS1Q5SR53 167 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms