RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 ARFGEF1Q9Y6D6 1849 aa2.63□□□□□ -1.99
PRKDC-209ENST00000540819 RREB1Q92766 1687 aa2.63□□□□□ -1.99
PRKDC-209ENST00000540819 ERICH3Q5RHP9 1530 aa2.63□□□□□ -1.99
PRKDC-209ENST00000540819 DLG5Q8TDM6 1919 aa2.62□□□□□ -1.99
PRKDC-209ENST00000540819 IGLC7A0M8Q6 106 aa2.62□□□□□ -1.99
PRKDC-209ENST00000540819 CLPSL1A2RUU4 121 aa2.62□□□□□ -1.99
PRKDC-209ENST00000540819 APOC3P02656 99 aa2.62□□□□□ -1.99
PRKDC-209ENST00000540819 ELOF1P60002 83 aaKnown RBP2.62□□□□□ -1.99
PRKDC-209ENST00000540819 RPL37AP61513 92 aaKnown RBP2.62□□□□□ -1.99
PRKDC-209ENST00000540819 C20orf197Q8N268 126 aa2.62□□□□□ -1.99
PRKDC-209ENST00000540819 UQCR10Q9UDW1 63 aa2.62□□□□□ -1.99
PRKDC-209ENST00000540819 SNURFQ9Y675 71 aa2.62□□□□□ -1.99
PRKDC-209ENST00000540819 FANCAO15360 1455 aa2.62□□□□□ -1.99
PRKDC-209ENST00000540819 GBF1Q92538 1859 aa2.62□□□□□ -1.99
PRKDC-209ENST00000540819 AFDNP55196 1824 aaKnown RBP2.61□□□□□ -1.99
PRKDC-209ENST00000540819 LOC101927531A0A1B0GV80 90 aa2.61□□□□□ -1.99
PRKDC-209ENST00000540819 CCL3L1P16619 93 aa2.61□□□□□ -1.99
PRKDC-209ENST00000540819 Q8N6K4 173 aa2.61□□□□□ -1.99
PRKDC-209ENST00000540819 ZNF625Q96I27 306 aaPredicted RBP2.61□□□□□ -1.99
PRKDC-209ENST00000540819 EPRSP07814 1512 aaKnown RBP2.61□□□□□ -1.99
PRKDC-209ENST00000540819 TOP2BQ02880 1626 aa2.6□□□□□ -1.99
PRKDC-209ENST00000540819 ATP10BO94823 1461 aa2.6□□□□□ -1.99
PRKDC-209ENST00000540819 TRGV2A0A075B6R0 118 aa2.6□□□□□ -1.99
PRKDC-209ENST00000540819 TRAV22A0A0B4J277 110 aa2.6□□□□□ -1.99
PRKDC-209ENST00000540819 COX6CP09669 75 aa2.6□□□□□ -1.99
PRKDC-209ENST00000540819 Q5VV11 94 aa2.6□□□□□ -1.99
PRKDC-209ENST00000540819 ZNF720Q7Z2F6 126 aa2.6□□□□□ -1.99
PRKDC-209ENST00000540819 PPP1R1CQ8WVI7 109 aa2.6□□□□□ -1.99
PRKDC-209ENST00000540819 DYNLRB1Q9NP97 96 aa2.6□□□□□ -1.99
PRKDC-209ENST00000540819 NXT2Q9NPJ8 142 aaKnown RBP2.6□□□□□ -1.99
PRKDC-209ENST00000540819 LENEPQ9Y5L5 61 aa2.6□□□□□ -1.99
PRKDC-209ENST00000540819 DNMBPQ6XZF7 1577 aa2.6□□□□□ -1.99
PRKDC-209ENST00000540819 BLMP54132 1417 aaPredicted RBP2.59□□□□□ -1.99
PRKDC-209ENST00000540819 PEAK1Q9H792 1746 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 UNC13BO14795 1591 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 TRBV6-7A0A0A0MS04 114 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 CHKB-CPT1BH3BT56 60 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 H7BZZ5 65 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 PRB2P02812 416 aaPredicted RBP2.59□□□□□ -1.99
PRKDC-209ENST00000540819 EDDM3BP56851 147 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 VMO1Q7Z5L0 202 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 COX7B2Q8TF08 81 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 CYSTM1Q9H1C7 97 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 MYH4Q9Y623 1939 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 KIF14Q15058 1648 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 MAP3K4Q9Y6R4 1608 aa2.59□□□□□ -1.99
PRKDC-209ENST00000540819 COL4A6Q14031 1691 aa2.59□□□□□ -2
PRKDC-209ENST00000540819 CACNA1GO43497 2377 aa2.59□□□□□ -2
PRKDC-209ENST00000540819 LRRIQ1Q96JM4 1722 aa2.59□□□□□ -2
PRKDC-209ENST00000540819 TET1Q8NFU7 2136 aa2.59□□□□□ -2
PRKDC-209ENST00000540819 DIP2CQ9Y2E4 1556 aa2.58□□□□□ -2
PRKDC-209ENST00000540819 IGKV3D-7A0A0C4DH55 119 aa2.58□□□□□ -2
PRKDC-209ENST00000540819 IGKV3OR2-268A0A0C4DH90 116 aa2.58□□□□□ -2
PRKDC-209ENST00000540819 NBDYA0A0U1RRE5 68 aa2.58□□□□□ -2
PRKDC-209ENST00000540819 LOC285095A0A1B0GVY8 99 aa2.58□□□□□ -2
PRKDC-209ENST00000540819 HCRTO43612 131 aa2.58□□□□□ -2
PRKDC-209ENST00000540819 IL9P15248 144 aa2.58□□□□□ -2
PRKDC-209ENST00000540819 FAM74A4Q5TZK3 123 aa2.58□□□□□ -2
PRKDC-209ENST00000540819 ALKAL2Q6UX46 152 aa2.58□□□□□ -2
PRKDC-209ENST00000540819 NDUFA4L2Q9NRX3 87 aa2.58□□□□□ -2
PRKDC-209ENST00000540819 MYO3AQ8NEV4 1616 aa2.57□□□□□ -2
PRKDC-209ENST00000540819 COL4A4P53420 1690 aaPredicted RBP2.57□□□□□ -2
PRKDC-209ENST00000540819 LOC285556D6RIA3 1793 aa2.57□□□□□ -2
PRKDC-209ENST00000540819 IGKV2-40A0A087WW87 121 aaPredicted RBP2.57□□□□□ -2
PRKDC-209ENST00000540819 IGKV2D-40P01614 121 aaPredicted RBP2.57□□□□□ -2
PRKDC-209ENST00000540819 FXYD3Q14802 87 aa2.57□□□□□ -2
PRKDC-209ENST00000540819 GDF5OSQ5U4N7 250 aa2.57□□□□□ -2
PRKDC-209ENST00000540819 XAF1Q6GPH4 301 aa2.57□□□□□ -2
PRKDC-209ENST00000540819 CDC42SE2Q9NRR3 84 aa2.57□□□□□ -2
PRKDC-209ENST00000540819 CCDC88BA6NC98 1476 aa2.57□□□□□ -2
PRKDC-209ENST00000540819 PHRF1Q9P1Y6 1649 aaKnown RBP2.57□□□□□ -2
PRKDC-209ENST00000540819 MYOM1P52179 1685 aa2.57□□□□□ -2
PRKDC-209ENST00000540819 A0A0G2JND7 137 aa2.56□□□□□ -2
PRKDC-209ENST00000540819 IGKV2-29A2NJV5 120 aaPredicted RBP2.56□□□□□ -2
PRKDC-209ENST00000540819 J3QRE1 110 aa2.56□□□□□ -2
PRKDC-209ENST00000540819 BCE1O60756 84 aa2.56□□□□□ -2
PRKDC-209ENST00000540819 FXYD4P59646 89 aa2.56□□□□□ -2
PRKDC-209ENST00000540819 KLKP1Q107X0 134 aa2.56□□□□□ -2
PRKDC-209ENST00000540819 ADIRFQ15847 76 aa2.56□□□□□ -2
PRKDC-209ENST00000540819 Q86TA4 180 aa2.56□□□□□ -2
PRKDC-209ENST00000540819 ST20Q9HBF5 79 aa2.56□□□□□ -2
PRKDC-209ENST00000540819 EDC4Q6P2E9 1401 aaKnown RBP2.56□□□□□ -2
PRKDC-209ENST00000540819 CCDC141Q6ZP82 1450 aa2.56□□□□□ -2
PRKDC-209ENST00000540819 DIP2BQ9P265 1576 aa2.56□□□□□ -2
PRKDC-209ENST00000540819 PDCD11Q14690 1871 aaKnown RBP2.56□□□□□ -2
PRKDC-209ENST00000540819 TMEM14DPA8MWL7 114 aa2.55□□□□□ -2
PRKDC-209ENST00000540819 PPP1R17O96001 155 aa2.55□□□□□ -2
PRKDC-209ENST00000540819 IGKV4-1P06312 121 aa2.55□□□□□ -2
PRKDC-209ENST00000540819 C5orf56Q8N8D9 126 aa2.55□□□□□ -2
PRKDC-209ENST00000540819 BPESC1Q9GZL8 116 aa2.55□□□□□ -2
PRKDC-209ENST00000540819 SPCS1Q9Y6A9 102 aa2.55□□□□□ -2
PRKDC-209ENST00000540819 HMGN4O00479 90 aa2.54□□□□□ -2
PRKDC-209ENST00000540819 SPAG11BQ08648 103 aa2.54□□□□□ -2
PRKDC-209ENST00000540819 SPAG11AQ6PDA7 123 aa2.54□□□□□ -2
PRKDC-209ENST00000540819 BRD3OSQ6XYD6 125 aa2.54□□□□□ -2
PRKDC-209ENST00000540819 V9GYH0 126 aa2.54□□□□□ -2
PRKDC-209ENST00000540819 UBR1Q8IWV7 1749 aa2.54□□□□□ -2
PRKDC-209ENST00000540819 POLA1P09884 1462 aaPredicted RBP2.53□□□□□ -2
PRKDC-209ENST00000540819 TRBV25-1A0A075B6N4 114 aa2.53□□□□□ -2
PRKDC-209ENST00000540819 SMIM31A0A1B0GVY4 71 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms