RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 PRSS3P2Q8NHM4 247 aa13.07□□□□□ -0.32
TNFRSF1A-213ENST00000540022 URB1-AS1Q96HZ7 61 aa13.07□□□□□ -0.32
TNFRSF1A-213ENST00000540022 TCAPO15273 167 aa13.06□□□□□ -0.32
TNFRSF1A-213ENST00000540022 TSHBP01222 138 aa13.06□□□□□ -0.32
TNFRSF1A-213ENST00000540022 KIR2DL4Q99706 377 aa13.06□□□□□ -0.32
TNFRSF1A-213ENST00000540022 GTSF1LQ9H1H1 148 aa13.06□□□□□ -0.32
TNFRSF1A-213ENST00000540022 NXT2Q9NPJ8 142 aaKnown RBP13.06□□□□□ -0.32
TNFRSF1A-213ENST00000540022 COTL1Q14019 142 aa13.05□□□□□ -0.32
TNFRSF1A-213ENST00000540022 LYPD5Q6UWN5 251 aa13.05□□□□□ -0.32
TNFRSF1A-213ENST00000540022 ESRGQ1W209 222 aa13.04□□□□□ -0.32
TNFRSF1A-213ENST00000540022 NIT1Q86X76 327 aa13.04□□□□□ -0.32
TNFRSF1A-213ENST00000540022 RAB5BP61020 215 aa13.03□□□□□ -0.32
TNFRSF1A-213ENST00000540022 BAGE3Q86Y29 109 aa13.03□□□□□ -0.32
TNFRSF1A-213ENST00000540022 TRBV6-8A0A0A6YYG3 113 aa13.03□□□□□ -0.32
TNFRSF1A-213ENST00000540022 LINC00614P0C842 121 aa13.03□□□□□ -0.32
TNFRSF1A-213ENST00000540022 FCER1GP30273 86 aa13.03□□□□□ -0.32
TNFRSF1A-213ENST00000540022 FA2HQ7L5A8 372 aa13.03□□□□□ -0.32
TNFRSF1A-213ENST00000540022 LINC01546A6NGU7 62 aa13.02□□□□□ -0.33
TNFRSF1A-213ENST00000540022 TCTAP57738 103 aa13.02□□□□□ -0.33
TNFRSF1A-213ENST00000540022 LINC00310P59036 64 aa13.02□□□□□ -0.33
TNFRSF1A-213ENST00000540022 AMTP48728 403 aa13.01□□□□□ -0.33
TNFRSF1A-213ENST00000540022 TIRAPP58753 221 aa13.01□□□□□ -0.33
TNFRSF1A-213ENST00000540022 TMEM97Q5BJF2 176 aa13.01□□□□□ -0.33
TNFRSF1A-213ENST00000540022 RNASEKQ6P5S7 137 aaKnown RBP13.01□□□□□ -0.33
TNFRSF1A-213ENST00000540022 CHCHD7Q9BUK0 85 aa13.01□□□□□ -0.33
TNFRSF1A-213ENST00000540022 SERF1AO75920 110 aa13□□□□□ -0.33
TNFRSF1A-213ENST00000540022 AP5S1Q9NUS5 200 aa13□□□□□ -0.33
TNFRSF1A-213ENST00000540022 K7EMI3 77 aa12.99□□□□□ -0.33
TNFRSF1A-213ENST00000540022 NUPR1O60356 82 aa12.99□□□□□ -0.33
TNFRSF1A-213ENST00000540022 ESDP10768 282 aa12.99□□□□□ -0.33
TNFRSF1A-213ENST00000540022 NDUFA6P56556 154 aa12.99□□□□□ -0.33
TNFRSF1A-213ENST00000540022 LAGE3Q14657 143 aa12.99□□□□□ -0.33
TNFRSF1A-213ENST00000540022 LELP1Q5T871 98 aa12.99□□□□□ -0.33
TNFRSF1A-213ENST00000540022 TRBV25-1A0A075B6N4 114 aa12.98□□□□□ -0.33
TNFRSF1A-213ENST00000540022 IGHV1-24A0A0C4DH33 117 aa12.98□□□□□ -0.33
TNFRSF1A-213ENST00000540022 CHCHD1Q96BP2 118 aaKnown RBP12.98□□□□□ -0.33
TNFRSF1A-213ENST00000540022 LINC00588Q9Y4M8 146 aa12.98□□□□□ -0.33
TNFRSF1A-213ENST00000540022 CCL18P55774 89 aa12.98□□□□□ -0.33
TNFRSF1A-213ENST00000540022 ORMDL2Q53FV1 153 aa12.98□□□□□ -0.33
TNFRSF1A-213ENST00000540022 COA6Q5JTJ3 125 aaKnown RBP12.97□□□□□ -0.33
TNFRSF1A-213ENST00000540022 TMEM243Q9BU79 118 aa12.97□□□□□ -0.33
TNFRSF1A-213ENST00000540022 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.96□□□□□ -0.33
TNFRSF1A-213ENST00000540022 IGKV2-29A2NJV5 120 aaPredicted RBP12.96□□□□□ -0.33
TNFRSF1A-213ENST00000540022 C20orf203Q8NBC4 194 aa12.96□□□□□ -0.33
TNFRSF1A-213ENST00000540022 CHCHD5Q9BSY4 110 aa12.96□□□□□ -0.33
TNFRSF1A-213ENST00000540022 A0A096LNJ9 63 aa12.95□□□□□ -0.34
TNFRSF1A-213ENST00000540022 PMCHL1Q16048 86 aa12.95□□□□□ -0.34
TNFRSF1A-213ENST00000540022 MRPS16Q9Y3D3 137 aaKnown RBP12.95□□□□□ -0.34
TNFRSF1A-213ENST00000540022 KMT2AQ03164 3969 aa12.95□□□□□ -0.34
TNFRSF1A-213ENST00000540022 HSBP1O75506 76 aa12.94□□□□□ -0.34
TNFRSF1A-213ENST00000540022 RPL39P62891 51 aaKnown RBP12.94□□□□□ -0.34
TNFRSF1A-213ENST00000540022 TRAV8-6A0A0B4J262 113 aa12.93□□□□□ -0.34
TNFRSF1A-213ENST00000540022 BTF3P20290 206 aaKnown RBP12.93□□□□□ -0.34
TNFRSF1A-213ENST00000540022 GAGE6Q13070 117 aa12.93□□□□□ -0.34
TNFRSF1A-213ENST00000540022 WFDC10BQ8IUB3 73 aa12.93□□□□□ -0.34
TNFRSF1A-213ENST00000540022 FAM19A2Q8N3H0 131 aa12.93□□□□□ -0.34
TNFRSF1A-213ENST00000540022 TMA7Q9Y2S6 64 aaKnown RBP12.93□□□□□ -0.34
TNFRSF1A-213ENST00000540022 C2orf66Q6UXQ4 117 aa12.93□□□□□ -0.34
TNFRSF1A-213ENST00000540022 CYSLTR1Q9Y271 337 aa12.92□□□□□ -0.34
TNFRSF1A-213ENST00000540022 UBE2L6O14933 153 aa12.91□□□□□ -0.34
TNFRSF1A-213ENST00000540022 UBE2DNLQ8IWF7 75 aa12.91□□□□□ -0.34
TNFRSF1A-213ENST00000540022 LINC00476Q8WZB0 136 aa12.91□□□□□ -0.34
TNFRSF1A-213ENST00000540022 UPK3BQ9BT76 320 aa12.91□□□□□ -0.34
TNFRSF1A-213ENST00000540022 EPPK1P58107 5090 aaKnown RBP12.91□□□□□ -0.34
TNFRSF1A-213ENST00000540022 TMEM262E9PQX1 116 aa12.9□□□□□ -0.34
TNFRSF1A-213ENST00000540022 H7C423 109 aa12.9□□□□□ -0.34
TNFRSF1A-213ENST00000540022 HBDP02042 147 aa12.9□□□□□ -0.34
TNFRSF1A-213ENST00000540022 S100A6P06703 90 aa12.9□□□□□ -0.34
TNFRSF1A-213ENST00000540022 FGF6P10767 208 aa12.9□□□□□ -0.34
TNFRSF1A-213ENST00000540022 Q8N3U1 123 aa12.9□□□□□ -0.34
TNFRSF1A-213ENST00000540022 TMEM18Q96B42 140 aa12.9□□□□□ -0.34
TNFRSF1A-213ENST00000540022 TOMM6Q96B49 74 aa12.9□□□□□ -0.34
TNFRSF1A-213ENST00000540022 VPS13DQ5THJ4 4388 aa12.9□□□□□ -0.34
TNFRSF1A-213ENST00000540022 G0S2P27469 103 aa12.89□□□□□ -0.35
TNFRSF1A-213ENST00000540022 UBE2D4Q9Y2X8 147 aa12.89□□□□□ -0.35
TNFRSF1A-213ENST00000540022 MPV17L2Q567V2 206 aa12.88□□□□□ -0.35
TNFRSF1A-213ENST00000540022 Q8N976 141 aa12.88□□□□□ -0.35
TNFRSF1A-213ENST00000540022 PDZD11Q5EBL8 140 aa12.88□□□□□ -0.35
TNFRSF1A-213ENST00000540022 MRPL52Q86TS9 123 aaKnown RBP12.88□□□□□ -0.35
TNFRSF1A-213ENST00000540022 SIVA1O15304 175 aa12.87□□□□□ -0.35
TNFRSF1A-213ENST00000540022 SNRPEP62304 92 aaKnown RBP12.87□□□□□ -0.35
TNFRSF1A-213ENST00000540022 RBX1P62877 108 aa12.87□□□□□ -0.35
TNFRSF1A-213ENST00000540022 AMMECR1LQ6DCA0 310 aa12.87□□□□□ -0.35
TNFRSF1A-213ENST00000540022 IGLV4-60A0A075B6I1 120 aa12.86□□□□□ -0.35
TNFRSF1A-213ENST00000540022 A0A087WX48 190 aa12.86□□□□□ -0.35
TNFRSF1A-213ENST00000540022 IGIPA6NJ69 53 aa12.86□□□□□ -0.35
TNFRSF1A-213ENST00000540022 TIMM21Q9BVV7 248 aa12.86□□□□□ -0.35
TNFRSF1A-213ENST00000540022 Q9H8V8 135 aa12.86□□□□□ -0.35
TNFRSF1A-213ENST00000540022 SPANXA1Q9NS26 97 aa12.86□□□□□ -0.35
TNFRSF1A-213ENST00000540022 A0A1B0GUV1 79 aa12.85□□□□□ -0.35
TNFRSF1A-213ENST00000540022 C5orf52A6NGY3 159 aa12.85□□□□□ -0.35
TNFRSF1A-213ENST00000540022 LY6G6CO95867 125 aa12.85□□□□□ -0.35
TNFRSF1A-213ENST00000540022 IGHV3-30P01768 117 aa12.85□□□□□ -0.35
TNFRSF1A-213ENST00000540022 IGHV3-33P01772 117 aa12.85□□□□□ -0.35
TNFRSF1A-213ENST00000540022 DNAH10OSP0CZ25 163 aa12.85□□□□□ -0.35
TNFRSF1A-213ENST00000540022 IGHV3-30-3P0DP02 117 aa12.85□□□□□ -0.35
TNFRSF1A-213ENST00000540022 IGHV3-30-5P0DP03 117 aa12.85□□□□□ -0.35
TNFRSF1A-213ENST00000540022 LINC01556Q5JQF7 62 aa12.85□□□□□ -0.35
TNFRSF1A-213ENST00000540022 LGALS9CQ6DKI2 356 aa12.85□□□□□ -0.35
TNFRSF1A-213ENST00000540022 HIST3H2BBQ8N257 126 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms