RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CTRLP40313 264 aa10.27□□□□□ -0.77
CPSF1-208ENST00000532560 CAMPP49913 170 aa10.27□□□□□ -0.77
CPSF1-208ENST00000532560 SSTP61278 116 aa10.27□□□□□ -0.77
CPSF1-208ENST00000532560 CACNG7P62955 275 aa10.27□□□□□ -0.77
CPSF1-208ENST00000532560 ATP6V0E2Q8NHE4 81 aa10.27□□□□□ -0.77
CPSF1-208ENST00000532560 GTSF1Q8WW33 167 aa10.27□□□□□ -0.77
CPSF1-208ENST00000532560 TPPP3Q9BW30 176 aa10.27□□□□□ -0.77
CPSF1-208ENST00000532560 TRBV10-1A0A0K0K1A3 114 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 GAGE12JA6NER3 117 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 PRSS29PA6NIE9 313 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 M0R143 59 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 KRTDAPP60985 99 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 GAGE1Q13065 139 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 GAGE4Q13068 117 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 GAGE5Q13069 117 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 GAGE13Q4V321 117 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 WFDC10BQ8IUB3 73 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 PGLYRP4Q96LB8 373 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 GTSF1LQ9H1H1 148 aa10.26□□□□□ -0.77
CPSF1-208ENST00000532560 K7EP13 123 aa10.25□□□□□ -0.77
CPSF1-208ENST00000532560 DNAH10OSP0CZ25 163 aa10.25□□□□□ -0.77
CPSF1-208ENST00000532560 ZNF56Q15929 161 aa10.25□□□□□ -0.77
CPSF1-208ENST00000532560 LYZL1Q6UWQ5 148 aa10.25□□□□□ -0.77
CPSF1-208ENST00000532560 NIT1Q86X76 327 aa10.25□□□□□ -0.77
CPSF1-208ENST00000532560 CNFNQ9BYD5 112 aa10.25□□□□□ -0.77
CPSF1-208ENST00000532560 Q9UF83 564 aa10.25□□□□□ -0.77
CPSF1-208ENST00000532560 KIF25-AS1Q9Y6Z4 181 aa10.25□□□□□ -0.77
CPSF1-208ENST00000532560 DNAH2Q9P225 4427 aa10.25□□□□□ -0.77
CPSF1-208ENST00000532560 SMIM17P0DL12 118 aa10.24□□□□□ -0.77
CPSF1-208ENST00000532560 LELP1Q5T871 98 aa10.24□□□□□ -0.77
CPSF1-208ENST00000532560 TRAV8-6A0A0B4J262 113 aa10.23□□□□□ -0.77
CPSF1-208ENST00000532560 A0A1B0GVY2 172 aa10.23□□□□□ -0.77
CPSF1-208ENST00000532560 C3orf79P0CE67 100 aa10.23□□□□□ -0.77
CPSF1-208ENST00000532560 LINC00469Q8N7U9 141 aa10.23□□□□□ -0.77
CPSF1-208ENST00000532560 Q8N976 141 aa10.23□□□□□ -0.77
CPSF1-208ENST00000532560 KRTAP17-1Q9BYP8 105 aa10.23□□□□□ -0.77
CPSF1-208ENST00000532560 DNAH17Q9UFH2 4485 aa10.23□□□□□ -0.77
CPSF1-208ENST00000532560 FAT2Q9NYQ8 4349 aa10.22□□□□□ -0.77
CPSF1-208ENST00000532560 HECTD4Q9Y4D8 3996 aa10.22□□□□□ -0.77
CPSF1-208ENST00000532560 TRAV9-2A0A087WT02 112 aa10.22□□□□□ -0.77
CPSF1-208ENST00000532560 EVI2AP22794 236 aa10.22□□□□□ -0.77
CPSF1-208ENST00000532560 LINC00315P59091 139 aa10.22□□□□□ -0.77
CPSF1-208ENST00000532560 RPL36AP83881 106 aaKnown RBP10.22□□□□□ -0.77
CPSF1-208ENST00000532560 RNASEKQ6P5S7 137 aaKnown RBP10.22□□□□□ -0.77
CPSF1-208ENST00000532560 RPL36ALQ969Q0 106 aaKnown RBP10.22□□□□□ -0.77
CPSF1-208ENST00000532560 MSRB1Q9NZV6 116 aa10.22□□□□□ -0.77
CPSF1-208ENST00000532560 TRBV7-3A0A075B6L6 115 aa10.21□□□□□ -0.77
CPSF1-208ENST00000532560 IGHV3-38A0A0C4DH36 116 aa10.21□□□□□ -0.77
CPSF1-208ENST00000532560 NTF3P20783 257 aa10.21□□□□□ -0.77
CPSF1-208ENST00000532560 UBE2D3P61077 147 aa10.21□□□□□ -0.77
CPSF1-208ENST00000532560 UBE2D2P62837 147 aa10.21□□□□□ -0.77
CPSF1-208ENST00000532560 LINC01556Q5JQF7 62 aa10.21□□□□□ -0.77
CPSF1-208ENST00000532560 C10orf126Q8N4M7 172 aa10.21□□□□□ -0.77
CPSF1-208ENST00000532560 NEXN-AS1Q8NBZ9 246 aa10.21□□□□□ -0.77
CPSF1-208ENST00000532560 UQCR10Q9UDW1 63 aa10.21□□□□□ -0.77
CPSF1-208ENST00000532560 F5H697 171 aa10.2□□□□□ -0.78
CPSF1-208ENST00000532560 LINC00614P0C842 121 aa10.2□□□□□ -0.78
CPSF1-208ENST00000532560 TMEM70Q9BUB7 260 aa10.2□□□□□ -0.78
CPSF1-208ENST00000532560 HSPB8Q9UJY1 196 aa10.2□□□□□ -0.78
CPSF1-208ENST00000532560 PAM16Q9Y3D7 125 aa10.2□□□□□ -0.78
CPSF1-208ENST00000532560 TNP2Q05952 138 aa10.19□□□□□ -0.78
CPSF1-208ENST00000532560 SPATA45Q537H7 98 aa10.19□□□□□ -0.78
CPSF1-208ENST00000532560 FAM19A2Q8N3H0 131 aa10.19□□□□□ -0.78
CPSF1-208ENST00000532560 DPH3P1Q9H4G8 78 aa10.19□□□□□ -0.78
CPSF1-208ENST00000532560 H7C1H1 209 aa10.18□□□□□ -0.78
CPSF1-208ENST00000532560 MGPP08493 103 aa10.18□□□□□ -0.78
CPSF1-208ENST00000532560 TWIST1Q15672 202 aa10.18□□□□□ -0.78
CPSF1-208ENST00000532560 Q6ZRN7 208 aaPredicted RBP10.18□□□□□ -0.78
CPSF1-208ENST00000532560 M0QY20 66 aa10.17□□□□□ -0.78
CPSF1-208ENST00000532560 LEPROTL1O95214 131 aa10.17□□□□□ -0.78
CPSF1-208ENST00000532560 SUMO4Q6EEV6 95 aa10.17□□□□□ -0.78
CPSF1-208ENST00000532560 PET117Q6UWS5 81 aa10.17□□□□□ -0.78
CPSF1-208ENST00000532560 NFE4Q86UQ8 179 aa10.17□□□□□ -0.78
CPSF1-208ENST00000532560 SNHG12Q9BXW3 62 aa10.17□□□□□ -0.78
CPSF1-208ENST00000532560 IGHV1-24A0A0C4DH33 117 aa10.16□□□□□ -0.78
CPSF1-208ENST00000532560 IGLC3P0DOY3 106 aa10.16□□□□□ -0.78
CPSF1-208ENST00000532560 URB1-AS1Q96HZ7 61 aa10.16□□□□□ -0.78
CPSF1-208ENST00000532560 MAP1LC3CQ9BXW4 147 aa10.16□□□□□ -0.78
CPSF1-208ENST00000532560 TMEM191AQ9H0A3 160 aa10.16□□□□□ -0.78
CPSF1-208ENST00000532560 A0A1B0GV90 55 aa10.15□□□□□ -0.78
CPSF1-208ENST00000532560 EREGO14944 169 aa10.15□□□□□ -0.78
CPSF1-208ENST00000532560 PPBPP02775 128 aa10.15□□□□□ -0.78
CPSF1-208ENST00000532560 FAM104BQ5XKR9 115 aa10.15□□□□□ -0.78
CPSF1-208ENST00000532560 DNAJC30Q96LL9 226 aa10.15□□□□□ -0.78
CPSF1-208ENST00000532560 ST20Q9HBF5 79 aa10.15□□□□□ -0.78
CPSF1-208ENST00000532560 AP5S1Q9NUS5 200 aa10.15□□□□□ -0.78
CPSF1-208ENST00000532560 LAMTOR2Q9Y2Q5 125 aa10.15□□□□□ -0.78
CPSF1-208ENST00000532560 IBA57-AS1B1ANH7 110 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 SYS1-DBNDD2H3BUS1 97 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 IGHV3-30P01768 117 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 IGHV3-33P01772 117 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 IGHV3-30-3P0DP02 117 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 IGHV3-30-5P0DP03 117 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 LAGE3Q14657 143 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 FA2HQ7L5A8 372 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 SMIM15Q7Z3B0 74 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 SPATA12Q7Z6I5 190 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 DAZ4Q86SG3 579 aaKnown RBP10.14□□□□□ -0.79
CPSF1-208ENST00000532560 ORMDL3Q8N138 153 aa10.14□□□□□ -0.79
CPSF1-208ENST00000532560 DAZ3Q9NR90 486 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms