RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TWIST1Q15672 202 aa7.31□□□□□ -1.24
VPS28-214ENST00000531032 IQCJQ1A5X6 159 aa7.31□□□□□ -1.24
VPS28-214ENST00000531032 LINC00269Q8N2A0 174 aa7.31□□□□□ -1.24
VPS28-214ENST00000531032 C9orf163Q8N9P6 203 aa7.31□□□□□ -1.24
VPS28-214ENST00000531032 OCC1Q8TAD7 63 aa7.31□□□□□ -1.24
VPS28-214ENST00000531032 HMCN2Q8NDA2 5059 aa7.31□□□□□ -1.24
VPS28-214ENST00000531032 NTF3P20783 257 aa7.3□□□□□ -1.24
VPS28-214ENST00000531032 GAGE6Q13070 117 aa7.3□□□□□ -1.24
VPS28-214ENST00000531032 RASL11AQ6T310 242 aa7.3□□□□□ -1.24
VPS28-214ENST00000531032 CLPSL2Q6UWE3 100 aa7.3□□□□□ -1.24
VPS28-214ENST00000531032 BORCS7Q96B45 105 aa7.3□□□□□ -1.24
VPS28-214ENST00000531032 SMIM7Q9BQ49 75 aa7.3□□□□□ -1.24
VPS28-214ENST00000531032 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.3□□□□□ -1.24
VPS28-214ENST00000531032 IGHV1-24A0A0C4DH33 117 aa7.29□□□□□ -1.24
VPS28-214ENST00000531032 M0QY20 66 aa7.29□□□□□ -1.24
VPS28-214ENST00000531032 HNRNPA3P51991 378 aaKnown RBP7.29□□□□□ -1.24
VPS28-214ENST00000531032 CLRN3Q8NCR9 226 aa7.29□□□□□ -1.24
VPS28-214ENST00000531032 ZNF727A8MUV8 499 aa7.28□□□□□ -1.24
VPS28-214ENST00000531032 A8MWL6 223 aa7.28□□□□□ -1.24
VPS28-214ENST00000531032 PANO1I0J062 215 aa7.28□□□□□ -1.24
VPS28-214ENST00000531032 REG3AQ06141 175 aa7.28□□□□□ -1.24
VPS28-214ENST00000531032 CIRBPQ14011 172 aaKnown RBP7.28□□□□□ -1.24
VPS28-214ENST00000531032 WDR73Q6P4I2 378 aa7.28□□□□□ -1.24
VPS28-214ENST00000531032 SDIM1Q6ZPB5 146 aa7.28□□□□□ -1.24
VPS28-214ENST00000531032 FAM210AQ96ND0 272 aa7.28□□□□□ -1.24
VPS28-214ENST00000531032 UBE2L6O14933 153 aa7.27□□□□□ -1.25
VPS28-214ENST00000531032 CNBPP62633 177 aaKnown RBP7.27□□□□□ -1.25
VPS28-214ENST00000531032 COTL1Q14019 142 aa7.27□□□□□ -1.25
VPS28-214ENST00000531032 FAM231DQ6ZW35 169 aa7.27□□□□□ -1.25
VPS28-214ENST00000531032 C20orf203Q8NBC4 194 aa7.27□□□□□ -1.25
VPS28-214ENST00000531032 PGLYRP4Q96LB8 373 aa7.27□□□□□ -1.25
VPS28-214ENST00000531032 TMEM243Q9BU79 118 aa7.27□□□□□ -1.25
VPS28-214ENST00000531032 NIT2Q9NQR4 276 aa7.27□□□□□ -1.25
VPS28-214ENST00000531032 PLA2G2DQ9UNK4 145 aa7.27□□□□□ -1.25
VPS28-214ENST00000531032 IGLV10-54A0A075B6I4 117 aa7.26□□□□□ -1.25
VPS28-214ENST00000531032 TRAV8-4A0A0B4J246 113 aa7.26□□□□□ -1.25
VPS28-214ENST00000531032 A0A1B0GUV1 79 aa7.26□□□□□ -1.25
VPS28-214ENST00000531032 AMTP48728 403 aa7.26□□□□□ -1.25
VPS28-214ENST00000531032 CT83Q5H943 113 aa7.26□□□□□ -1.25
VPS28-214ENST00000531032 CNFNQ9BYD5 112 aa7.26□□□□□ -1.25
VPS28-214ENST00000531032 PKHD1L1Q86WI1 4243 aa7.25□□□□□ -1.25
VPS28-214ENST00000531032 IGLV4-60A0A075B6I1 120 aa7.25□□□□□ -1.25
VPS28-214ENST00000531032 TRAV26-2A0A0B4J265 109 aa7.25□□□□□ -1.25
VPS28-214ENST00000531032 hDV102S1A0JD36 115 aa7.25□□□□□ -1.25
VPS28-214ENST00000531032 NDUFS6O75380 124 aaKnown RBP7.25□□□□□ -1.25
VPS28-214ENST00000531032 SRSF3P84103 164 aaKnown RBP7.25□□□□□ -1.25
VPS28-214ENST00000531032 LINC01551Q86U37 167 aa7.25□□□□□ -1.25
VPS28-214ENST00000531032 GTSF1Q8WW33 167 aa7.25□□□□□ -1.25
VPS28-214ENST00000531032 GFRA4Q9GZZ7 299 aa7.25□□□□□ -1.25
VPS28-214ENST00000531032 C9JQL5 133 aa7.24□□□□□ -1.25
VPS28-214ENST00000531032 SRP19P09132 144 aaKnown RBP7.24□□□□□ -1.25
VPS28-214ENST00000531032 IGHV3-64A0A075B6Q5 118 aa7.23□□□□□ -1.25
VPS28-214ENST00000531032 HIGD1CA8MV81 97 aa7.23□□□□□ -1.25
VPS28-214ENST00000531032 SLPIP03973 132 aa7.23□□□□□ -1.25
VPS28-214ENST00000531032 MT1HL1P0DM35 61 aa7.23□□□□□ -1.25
VPS28-214ENST00000531032 GATD1Q8NB37 220 aa7.23□□□□□ -1.25
VPS28-214ENST00000531032 TSKUQ8WUA8 353 aa7.23□□□□□ -1.25
VPS28-214ENST00000531032 OSTCQ9NRP0 149 aa7.23□□□□□ -1.25
VPS28-214ENST00000531032 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.22□□□□□ -1.25
VPS28-214ENST00000531032 A0A1B0GUT8 65 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 APCSP02743 223 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 PEA15Q15121 130 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 ADIRFQ15847 76 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 FAM74A3Q4VXF1 159 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 CLLU1Q5K131 121 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 AMMECR1LQ6DCA0 310 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 Q6ZRU5 148 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 SPACA4Q8TDM5 124 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 RPL39LQ96EH5 51 aaKnown RBP7.22□□□□□ -1.25
VPS28-214ENST00000531032 RNF185Q96GF1 192 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 AP5S1Q9NUS5 200 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 UBR4Q5T4S7 5183 aa7.22□□□□□ -1.25
VPS28-214ENST00000531032 FOXA3P55318 350 aaPredicted RBP7.21□□□□□ -1.26
VPS28-214ENST00000531032 TMEM241Q24JQ0 296 aa7.21□□□□□ -1.26
VPS28-214ENST00000531032 A0A087WYN8 130 aa7.2□□□□□ -1.26
VPS28-214ENST00000531032 IGKV3OR2-268A0A0C4DH90 116 aa7.2□□□□□ -1.26
VPS28-214ENST00000531032 FAM231BA6NCW3 169 aa7.2□□□□□ -1.26
VPS28-214ENST00000531032 SDHAF1A6NFY7 115 aa7.2□□□□□ -1.26
VPS28-214ENST00000531032 NCR2O95944 276 aa7.2□□□□□ -1.26
VPS28-214ENST00000531032 CHTF8P0CG12 524 aa7.2□□□□□ -1.26
VPS28-214ENST00000531032 PMCHP20382 165 aa7.2□□□□□ -1.26
VPS28-214ENST00000531032 RIGQ13278 110 aa7.2□□□□□ -1.26
VPS28-214ENST00000531032 RNASEKQ6P5S7 137 aaKnown RBP7.2□□□□□ -1.26
VPS28-214ENST00000531032 C15orf56Q8N910 161 aa7.2□□□□□ -1.26
VPS28-214ENST00000531032 ISOC2Q96AB3 205 aa7.2□□□□□ -1.26
VPS28-214ENST00000531032 NAT8Q9UHE5 227 aa7.2□□□□□ -1.26
VPS28-214ENST00000531032 RPL23P62829 140 aaKnown RBP7.19□□□□□ -1.26
VPS28-214ENST00000531032 TMEM191AQ9H0A3 160 aa7.19□□□□□ -1.26
VPS28-214ENST00000531032 ST20Q9HBF5 79 aa7.19□□□□□ -1.26
VPS28-214ENST00000531032 PLAC8Q9NZF1 115 aa7.19□□□□□ -1.26
VPS28-214ENST00000531032 NAT8BQ9UHF3 227 aa7.19□□□□□ -1.26
VPS28-214ENST00000531032 V9GYV3 84 aa7.19□□□□□ -1.26
VPS28-214ENST00000531032 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.18□□□□□ -1.26
VPS28-214ENST00000531032 IGKV2-29A2NJV5 120 aaPredicted RBP7.18□□□□□ -1.26
VPS28-214ENST00000531032 RAB14P61106 215 aa7.18□□□□□ -1.26
VPS28-214ENST00000531032 CFAP161Q6P656 301 aa7.18□□□□□ -1.26
VPS28-214ENST00000531032 AMN1Q8IY45 258 aa7.18□□□□□ -1.26
VPS28-214ENST00000531032 DPH3Q96FX2 82 aa7.18□□□□□ -1.26
VPS28-214ENST00000531032 MRAP2Q96G30 205 aa7.18□□□□□ -1.26
VPS28-214ENST00000531032 BTF3L4Q96K17 158 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms