RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 COL5A3P25940 1745 aaPredicted RBP2.76□□□□□ -1.97
USP47-204ENST00000525078 PLXNA4Q9HCM2 1894 aa2.75□□□□□ -1.97
USP47-204ENST00000525078 SIP14410 1827 aa2.75□□□□□ -1.97
USP47-204ENST00000525078 EML5Q05BV3 1969 aa2.75□□□□□ -1.97
USP47-204ENST00000525078 A0A087WXM4 84 aa2.75□□□□□ -1.97
USP47-204ENST00000525078 A0A0G2JND7 137 aa2.75□□□□□ -1.97
USP47-204ENST00000525078 PPYP01298 95 aa2.75□□□□□ -1.97
USP47-204ENST00000525078 C9orf116Q5BN46 136 aaPredicted RBP2.75□□□□□ -1.97
USP47-204ENST00000525078 SPTSSBQ8NFR3 76 aa2.75□□□□□ -1.97
USP47-204ENST00000525078 S100ZQ8WXG8 99 aa2.75□□□□□ -1.97
USP47-204ENST00000525078 ATG5Q9H1Y0 275 aa2.75□□□□□ -1.97
USP47-204ENST00000525078 NRXN2Q9P2S2 1712 aa2.75□□□□□ -1.97
USP47-204ENST00000525078 LRRC37AA6NMS7 1700 aa2.74□□□□□ -1.97
USP47-204ENST00000525078 BRWD1Q9NSI6 2320 aa2.74□□□□□ -1.97
USP47-204ENST00000525078 DNAL4O96015 105 aa2.74□□□□□ -1.97
USP47-204ENST00000525078 RNASE3P12724 160 aaKnown RBP2.74□□□□□ -1.97
USP47-204ENST00000525078 UBA52P62987 128 aaKnown RBP2.74□□□□□ -1.97
USP47-204ENST00000525078 C5orf38Q86SI9 138 aa2.74□□□□□ -1.97
USP47-204ENST00000525078 LIMD2Q9BT23 127 aa2.74□□□□□ -1.97
USP47-204ENST00000525078 PRO0461Q9UI25 63 aa2.74□□□□□ -1.97
USP47-204ENST00000525078 MED12LQ86YW9 2145 aa2.74□□□□□ -1.97
USP47-204ENST00000525078 PTPRFP10586 1907 aa2.74□□□□□ -1.97
USP47-204ENST00000525078 CEP192Q8TEP8 1941 aa2.74□□□□□ -1.97
USP47-204ENST00000525078 UBE2L5PA0A1B0GUS4 154 aa2.73□□□□□ -1.97
USP47-204ENST00000525078 NUPR1O60356 82 aa2.73□□□□□ -1.97
USP47-204ENST00000525078 MRPS14O60783 128 aaKnown RBP2.73□□□□□ -1.97
USP47-204ENST00000525078 IGKV4-1P06312 121 aa2.73□□□□□ -1.97
USP47-204ENST00000525078 TRAPPC2P0DI81 140 aa2.73□□□□□ -1.97
USP47-204ENST00000525078 TRAPPC2BP0DI82 140 aa2.73□□□□□ -1.97
USP47-204ENST00000525078 SNCAP37840 140 aa2.73□□□□□ -1.97
USP47-204ENST00000525078 ATP5EP56381 51 aaPredicted RBP2.73□□□□□ -1.97
USP47-204ENST00000525078 UBE2L3P68036 154 aaKnown RBP2.73□□□□□ -1.97
USP47-204ENST00000525078 DCDP81605 110 aaKnown RBP2.73□□□□□ -1.97
USP47-204ENST00000525078 DPY30Q9C005 99 aa2.73□□□□□ -1.97
USP47-204ENST00000525078 MRPL36Q9P0J6 103 aaKnown RBP2.73□□□□□ -1.97
USP47-204ENST00000525078 V9GYS6 101 aa2.73□□□□□ -1.97
USP47-204ENST00000525078 MCM3APO60318 1980 aa2.72□□□□□ -1.97
USP47-204ENST00000525078 TRBV10-1A0A0K0K1A3 114 aa2.72□□□□□ -1.97
USP47-204ENST00000525078 LINC00032P0C843 101 aa2.72□□□□□ -1.97
USP47-204ENST00000525078 C4orf33Q8N1A6 199 aa2.72□□□□□ -1.97
USP47-204ENST00000525078 DMAC1Q96GE9 116 aa2.72□□□□□ -1.97
USP47-204ENST00000525078 MRPL35Q9NZE8 188 aaKnown RBP2.72□□□□□ -1.97
USP47-204ENST00000525078 BAZ2BQ9UIF8 2168 aaKnown RBP2.72□□□□□ -1.97
USP47-204ENST00000525078 NINQ8N4C6 2090 aa2.72□□□□□ -1.97
USP47-204ENST00000525078 DOCK1Q14185 1865 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 A0A0G2JMZ2 1700 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 LRRC37A2A6NM11 1700 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 A0A0J9YY99 117 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 CXorf51AA0A1B0GTR3 108 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 JMJD7-PLA2G4BH0Y9G9 81 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 MPV17LQ2QL34 196 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 BRD3OSQ6XYD6 125 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 ZNF720Q7Z2F6 126 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 DEFB107AQ8IZN7 70 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 WFDC10AQ9H1F0 79 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 DPH3P1Q9H4G8 78 aa2.71□□□□□ -1.98
USP47-204ENST00000525078 COL14A1Q05707 1796 aaKnown RBP2.7□□□□□ -1.98
USP47-204ENST00000525078 TRAV23DV6A0A075B6W5 121 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 TRBV10-3A0A0K0K1G6 114 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 RBAKDNA6NC62 111 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 NUPR2A6NF83 97 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 J3QRE1 110 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 SSSCA1O60232 199 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 PRB2P02812 416 aaPredicted RBP2.7□□□□□ -1.98
USP47-204ENST00000525078 KRTAP10-3P60369 221 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 SBSPONQ8IVN8 264 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 IFI27L1Q96BM0 104 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 VAMP8Q9BV40 100 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 TMEM14CQ9P0S9 112 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 C22orf24Q9Y442 160 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 TSC2P49815 1807 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 PARP14Q460N5 1801 aa2.7□□□□□ -1.98
USP47-204ENST00000525078 COL4A1P02462 1669 aa2.69□□□□□ -1.98
USP47-204ENST00000525078 LOC285556D6RIA3 1793 aa2.69□□□□□ -1.98
USP47-204ENST00000525078 RTTNQ86VV8 2226 aa2.69□□□□□ -1.98
USP47-204ENST00000525078 SPRR5A0A1B0GTR4 108 aa2.69□□□□□ -1.98
USP47-204ENST00000525078 C6orf52Q5T4I8 152 aa2.69□□□□□ -1.98
USP47-204ENST00000525078 NDUFA11Q86Y39 141 aa2.69□□□□□ -1.98
USP47-204ENST00000525078 OBSCNQ5VST9 7968 aa2.69□□□□□ -1.98
USP47-204ENST00000525078 PCDH15Q96QU1 1955 aa2.69□□□□□ -1.98
USP47-204ENST00000525078 ZNF236Q9UL36 1845 aa2.68□□□□□ -1.98
USP47-204ENST00000525078 TRGV2A0A075B6R0 118 aa2.68□□□□□ -1.98
USP47-204ENST00000525078 TRAV12-3A0A0B4J271 114 aa2.68□□□□□ -1.98
USP47-204ENST00000525078 XAF1Q6GPH4 301 aa2.68□□□□□ -1.98
USP47-204ENST00000525078 Q6ZRN7 208 aaPredicted RBP2.68□□□□□ -1.98
USP47-204ENST00000525078 COMMD6Q7Z4G1 85 aa2.68□□□□□ -1.98
USP47-204ENST00000525078 C15orf53Q8NAA6 179 aa2.68□□□□□ -1.98
USP47-204ENST00000525078 SNURFQ9Y675 71 aa2.68□□□□□ -1.98
USP47-204ENST00000525078 PLXNA2O75051 1894 aa2.68□□□□□ -1.98
USP47-204ENST00000525078 FREM1Q5H8C1 2179 aa2.67□□□□□ -1.98
USP47-204ENST00000525078 MYOFQ9NZM1 2061 aa2.67□□□□□ -1.98
USP47-204ENST00000525078 IGLV3-32A0A0A0MS00 114 aa2.67□□□□□ -1.98
USP47-204ENST00000525078 TRAV13-2A0A0B4J235 113 aa2.67□□□□□ -1.98
USP47-204ENST00000525078 H3BQ15 152 aa2.67□□□□□ -1.98
USP47-204ENST00000525078 CCKP06307 115 aa2.67□□□□□ -1.98
USP47-204ENST00000525078 C9orf62Q8N4C0 152 aa2.67□□□□□ -1.98
USP47-204ENST00000525078 ODF3Q96PU9 254 aa2.67□□□□□ -1.98
USP47-204ENST00000525078 BTAF1O14981 1849 aa2.66□□□□□ -1.98
USP47-204ENST00000525078 MDC1Q14676 2089 aaKnown RBP2.66□□□□□ -1.98
USP47-204ENST00000525078 IGHV3-30P01768 117 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms