RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 A0A087WX48 190 aa5.35□□□□□ -1.55
LIMCH1-222ENST00000515847 IGHV1-24A0A0C4DH33 117 aa5.35□□□□□ -1.55
LIMCH1-222ENST00000515847 IGHV3-38A0A0C4DH36 116 aa5.35□□□□□ -1.55
LIMCH1-222ENST00000515847 TRBV6-5A0A0K0K1A5 114 aa5.35□□□□□ -1.55
LIMCH1-222ENST00000515847 APCSP02743 223 aa5.35□□□□□ -1.55
LIMCH1-222ENST00000515847 ESRGQ1W209 222 aa5.35□□□□□ -1.55
LIMCH1-222ENST00000515847 NFE4Q86UQ8 179 aa5.35□□□□□ -1.55
LIMCH1-222ENST00000515847 AMN1Q8IY45 258 aa5.35□□□□□ -1.55
LIMCH1-222ENST00000515847 TMEM18Q96B42 140 aa5.35□□□□□ -1.55
LIMCH1-222ENST00000515847 C20orf78Q9BR46 151 aa5.35□□□□□ -1.55
LIMCH1-222ENST00000515847 Q9H8V8 135 aa5.35□□□□□ -1.55
LIMCH1-222ENST00000515847 TRBV6-8A0A0A6YYG3 113 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 LOC100131303A0A0U1RQF7 123 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 SDHAF1A6NFY7 115 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 I3L3M4 83 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 RAB4AP20338 218 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 PMCHP20382 165 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 FCER1GP30273 86 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 AMTP48728 403 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 LINC00315P59091 139 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 LAGE3Q14657 143 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 LINC01556Q5JQF7 62 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 Q6ZSN1 163 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 RMI2Q96E14 147 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 TMEM243Q9BU79 118 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 SMCO4Q9NRQ5 59 aa5.34□□□□□ -1.55
LIMCH1-222ENST00000515847 NBDYA0A0U1RRE5 68 aa5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 H7C423 109 aa5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 K7EMI3 77 aa5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 VCYO14598 125 aa5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 CRPP02741 224 aa5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 DNAH10OSP0CZ25 163 aa5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 G0S2P27469 103 aa5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 SUMO2P61956 95 aaKnown RBP5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 RPL32P62910 135 aaKnown RBP5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 IQCJQ1A5X6 159 aa5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 CHCHD5Q9BSY4 110 aa5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 GNB1LQ9BYB4 327 aa5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 MAP1LC3AQ9H492 121 aa5.33□□□□□ -1.56
LIMCH1-222ENST00000515847 TRBV24-1A0A075B6N3 115 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 TRAV26-2A0A0B4J265 109 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 LINC01549A6NIU2 74 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 D6R8Y8 96 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 RAB5AP20339 215 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 MRPL51Q4U2R6 128 aaKnown RBP5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 LCE4AQ5TA78 99 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 AMMECR1LQ6DCA0 310 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 TMEM136Q6ZRR5 245 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 RNF185Q96GF1 192 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 PRELID3AQ96N28 172 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 KRTAP4-9Q9BYQ8 210 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 COX11Q9Y6N1 276 aa5.32□□□□□ -1.56
LIMCH1-222ENST00000515847 DNAH17Q9UFH2 4485 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 IGLV2-18A0A075B6J9 118 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 TRAV8-3A0A0A6YYJ7 113 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 TRBV27A0A0K0K1C4 114 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 TMEM262E9PQX1 116 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 ZNF25P17030 456 aaPredicted RBP5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 Q0VG73 95 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 C1orf134Q5TEV5 83 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 LINC00336Q6ZUF6 198 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 RPL39LQ96EH5 51 aaKnown RBP5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 TMEM101Q96IK0 257 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 TMEM70Q9BUB7 260 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 SMIM2Q9BVW6 85 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 TM2D2Q9BX73 214 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 NXT2Q9NPJ8 142 aaKnown RBP5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 FAT2Q9NYQ8 4349 aa5.31□□□□□ -1.56
LIMCH1-222ENST00000515847 TNFRSF6BO95407 300 aa5.3□□□□□ -1.56
LIMCH1-222ENST00000515847 S100A1P23297 94 aa5.3□□□□□ -1.56
LIMCH1-222ENST00000515847 NIT1Q86X76 327 aa5.3□□□□□ -1.56
LIMCH1-222ENST00000515847 WFDC10BQ8IUB3 73 aa5.3□□□□□ -1.56
LIMCH1-222ENST00000515847 SLC7A5P1Q8MH63 180 aa5.3□□□□□ -1.56
LIMCH1-222ENST00000515847 C6orf223Q8N319 242 aa5.3□□□□□ -1.56
LIMCH1-222ENST00000515847 FABP9Q0Z7S8 132 aa5.29□□□□□ -1.56
LIMCH1-222ENST00000515847 ORMDL2Q53FV1 153 aa5.29□□□□□ -1.56
LIMCH1-222ENST00000515847 NRACQ8N912 160 aa5.29□□□□□ -1.56
LIMCH1-222ENST00000515847 SVIPQ8NHG7 77 aa5.29□□□□□ -1.56
LIMCH1-222ENST00000515847 TRAPPC1Q9Y5R8 145 aa5.29□□□□□ -1.56
LIMCH1-222ENST00000515847 A0A1B0GUV1 79 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 SMKR1H3BMG3 65 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 M0R2N4 97 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 PSCAO43653 123 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 IGHV3-30P01768 117 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 IGHV3-33P01772 117 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 ANGP03950 147 aaKnown RBP5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 IGHV3-30-3P0DP02 117 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 IGHV3-30-5P0DP03 117 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 POLR2KP53803 58 aaKnown RBP5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 RAB5BP61020 215 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 PAPPA-AS1Q5QFB9 102 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 DGAT2L7PQ6IED9 249 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 Q6ZR54 194 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 OR5A1Q8NGJ0 315 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 HECTD4Q9Y4D8 3996 aa5.28□□□□□ -1.56
LIMCH1-222ENST00000515847 PRSS47A8MTI9 375 aa5.27□□□□□ -1.57
LIMCH1-222ENST00000515847 IBA57-AS1B1ANH7 110 aa5.27□□□□□ -1.57
LIMCH1-222ENST00000515847 NPYP01303 97 aa5.27□□□□□ -1.57
LIMCH1-222ENST00000515847 RPS10P46783 165 aaKnown RBP5.27□□□□□ -1.57
LIMCH1-222ENST00000515847 GAGE6Q13070 117 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms