RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 GRIFINA4D1Z8 144 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 B4DEV8 164 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 GGTLC3B5MD39 225 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 UMAD1C9J7I0 102 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 M0R036 132 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 PFN1P07737 140 aaKnown RBP2.33□□□□□ -2.04
NUP54-212ENST00000513248 RHOHQ15669 191 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 FAM74A4Q5TZK3 123 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 EIF5AL1Q6IS14 154 aaKnown RBP2.33□□□□□ -2.04
NUP54-212ENST00000513248 LYPD5Q6UWN5 251 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 SPATA12Q7Z6I5 190 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 KCNRGQ8N5I3 272 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.33□□□□□ -2.04
NUP54-212ENST00000513248 FAM104AQ969W3 186 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 HIST1H2BAQ96A08 127 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 TVP23CQ96ET8 276 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 FMC1Q96HJ9 113 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 C18orf15Q96N68 181 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 UPK3BQ9BT76 320 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 PHLDA3Q9Y5J5 127 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 URGCP-MRPS24S4R325 110 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 ARL2-SNX15V9GYD0 113 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 A8MWV9 139 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 H3BVH4 76 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 M0R381 172 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 RS1O15537 224 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 SH2D1AO60880 128 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 IFNA1P01562 189 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 IGHV3-30P01768 117 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 IGHV3-33P01772 117 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 S100A9P06702 114 aaKnown RBP2.32□□□□□ -2.04
NUP54-212ENST00000513248 CRYGDP07320 174 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 ARMS2P0C7Q2 107 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 SEC11BP0C7V7 166 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 SMIM17P0DL12 118 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 IGHV3-30-3P0DP02 117 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 IGHV3-30-5P0DP03 117 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 MGST1P10620 155 aaKnown RBP2.32□□□□□ -2.04
NUP54-212ENST00000513248 CTRLP40313 264 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 ZNF80P51504 273 aaPredicted RBP2.32□□□□□ -2.04
NUP54-212ENST00000513248 LINC00315P59091 139 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 ZNF726P1Q15940 193 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 TDRG1Q3Y452 100 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 FAM162BQ5T6X4 162 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 SPANXN1Q5VSR9 72 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 Q86TA4 180 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 WFDC10BQ8IUB3 73 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 C10orf126Q8N4M7 172 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 ATP6V0E2Q8NHE4 81 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 CHCHD10Q8WYQ3 142 aaPredicted RBP2.32□□□□□ -2.04
NUP54-212ENST00000513248 GNG13Q9P2W3 67 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 ZFP30Q9Y2G7 519 aa2.32□□□□□ -2.04
NUP54-212ENST00000513248 FRAS1Q86XX4 4008 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 TRBV6-4A0A1B0GX49 114 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 HMSDA8MTL9 139 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 MGPP08493 103 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 RNASE3P12724 160 aaKnown RBP2.31□□□□□ -2.04
NUP54-212ENST00000513248 ZNF345Q14585 488 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 ZNF56Q15929 161 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 CFAP126Q5VTH2 177 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 DPPA3Q6W0C5 159 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 BAGE2Q86Y30 109 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 ZFP82Q8N141 532 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 SLC25A29Q8N8R3 303 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 NKAPP1Q8N9T2 125 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 SUN5Q8TC36 379 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 ZC2HC1AQ96GY0 325 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 TMEM101Q96IK0 257 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 TCEAL7Q9BRU2 100 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 TPPP3Q9BW30 176 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 GTSF1LQ9H1H1 148 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 MANBALQ9NQG1 85 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 CYTL1Q9NRR1 136 aa2.31□□□□□ -2.04
NUP54-212ENST00000513248 NACAE9PAV3 2078 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 MUC4Q99102 2169 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 A0A087WWC5 75 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 A0A087WX48 190 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 MUC21A0A0G2JKD1 596 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 A0A0J9YXY3 114 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 MUC21A0A140T8X8 626 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 XKRY2A2RUG3 117 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 KRBOX1C9JBD0 128 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 TMEM262E9PQX1 116 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 K7EP13 123 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 RAB5CP51148 216 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 CEBPGP53567 150 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 RPS20P60866 119 aaKnown RBP2.3□□□□□ -2.04
NUP54-212ENST00000513248 LELP1Q5T871 98 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 ZFP2Q6ZN57 461 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 AKAP14Q86UN6 197 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 C20orf203Q8NBC4 194 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 PTH2Q96A98 100 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 RMI2Q96E14 147 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 MED9Q9NWA0 146 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 IL36BQ9NZH7 164 aa2.3□□□□□ -2.04
NUP54-212ENST00000513248 PLECQ15149 4684 aaKnown RBP2.29□□□□□ -2.04
NUP54-212ENST00000513248 A0A087WTM6 91 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 TRAV8-3A0A0A6YYJ7 113 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 TRBV6-1A0A0K0K1D8 114 aa2.29□□□□□ -2.04
NUP54-212ENST00000513248 G3V3Q6 166 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms