RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CFTRP13569 1480 aa-0.05□□□□□ -2.42
HMGB1P28-201ENST00000507778 UBR5O95071 2799 aaPredicted RBP-0.06□□□□□ -2.42
HMGB1P28-201ENST00000507778 FAM25AB3EWG3 89 aa-0.06□□□□□ -2.42
HMGB1P28-201ENST00000507778 FAM25CB3EWG5 89 aa-0.06□□□□□ -2.42
HMGB1P28-201ENST00000507778 FAM25GB3EWG6 89 aa-0.06□□□□□ -2.42
HMGB1P28-201ENST00000507778 CFDP00746 253 aaPredicted RBP-0.06□□□□□ -2.42
HMGB1P28-201ENST00000507778 S100A12P80511 92 aa-0.06□□□□□ -2.42
HMGB1P28-201ENST00000507778 SNRNP25Q9BV90 132 aaKnown RBP-0.06□□□□□ -2.42
HMGB1P28-201ENST00000507778 LINC00470Q9BZP3 86 aa-0.06□□□□□ -2.42
HMGB1P28-201ENST00000507778 RERGLQ9H628 205 aa-0.06□□□□□ -2.42
HMGB1P28-201ENST00000507778 CELSR1Q9NYQ6 3014 aa-0.06□□□□□ -2.42
HMGB1P28-201ENST00000507778 TNXBP22105 4242 aa-0.06□□□□□ -2.42
HMGB1P28-201ENST00000507778 CELSR2Q9HCU4 2923 aa-0.07□□□□□ -2.42
HMGB1P28-201ENST00000507778 PLXNB2O15031 1838 aa-0.07□□□□□ -2.42
HMGB1P28-201ENST00000507778 C10orf128Q5T292 105 aa-0.07□□□□□ -2.42
HMGB1P28-201ENST00000507778 Q6AWC8 147 aa-0.07□□□□□ -2.42
HMGB1P28-201ENST00000507778 Q8N8P6 123 aa-0.07□□□□□ -2.42
HMGB1P28-201ENST00000507778 SCN3BQ9NY72 215 aa-0.07□□□□□ -2.42
HMGB1P28-201ENST00000507778 SERP1Q9Y6X1 66 aa-0.07□□□□□ -2.42
HMGB1P28-201ENST00000507778 WNK2Q9Y3S1 2297 aa-0.07□□□□□ -2.42
HMGB1P28-201ENST00000507778 IFT172Q9UG01 1749 aa-0.07□□□□□ -2.42
HMGB1P28-201ENST00000507778 TSC2P49815 1807 aa-0.08□□□□□ -2.42
HMGB1P28-201ENST00000507778 MRC1P22897 1456 aa-0.08□□□□□ -2.42
HMGB1P28-201ENST00000507778 MUC2Q02817 5179 aa-0.08□□□□□ -2.42
HMGB1P28-201ENST00000507778 NDUFA2O43678 99 aa-0.08□□□□□ -2.42
HMGB1P28-201ENST00000507778 GNG7O60262 68 aa-0.08□□□□□ -2.42
HMGB1P28-201ENST00000507778 LSM10Q969L4 123 aaKnown RBP-0.08□□□□□ -2.42
HMGB1P28-201ENST00000507778 HMCN2Q8NDA2 5059 aa-0.08□□□□□ -2.42
HMGB1P28-201ENST00000507778 UNC79Q9P2D8 2635 aa-0.08□□□□□ -2.42
HMGB1P28-201ENST00000507778 KDM5AP29375 1690 aaKnown RBP-0.08□□□□□ -2.42
HMGB1P28-201ENST00000507778 PRDM2Q13029 1718 aa-0.09□□□□□ -2.42
HMGB1P28-201ENST00000507778 FLNCQ14315 2725 aa-0.09□□□□□ -2.42
HMGB1P28-201ENST00000507778 SMIM4Q8WVI0 70 aa-0.09□□□□□ -2.42
HMGB1P28-201ENST00000507778 TSC22D3Q99576 134 aa-0.09□□□□□ -2.42
HMGB1P28-201ENST00000507778 FAM107BQ9H098 131 aa-0.09□□□□□ -2.42
HMGB1P28-201ENST00000507778 LENEPQ9Y5L5 61 aa-0.09□□□□□ -2.42
HMGB1P28-201ENST00000507778 ZNF236Q9UL36 1845 aa-0.09□□□□□ -2.42
HMGB1P28-201ENST00000507778 NWD2Q9ULI1 1742 aa-0.1□□□□□ -2.42
HMGB1P28-201ENST00000507778 PPRC1Q5VV67 1664 aaKnown RBP-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 HSPG2P98160 4391 aa-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 MYCBP2O75592 4640 aa-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 CTXND1A0A1B0GTU2 59 aa-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 M0R135 149 aa-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 M0R3E3 92 aa-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 TTC9CQ8N5M4 171 aa-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 NAA60Q9H7X0 242 aa-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 DOCK1Q14185 1865 aa-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 BIVM-ERCC5R4GMW8 1640 aa-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 DOCK2Q92608 1830 aa-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 NSD1Q96L73 2696 aaPredicted RBP-0.1□□□□□ -2.43
HMGB1P28-201ENST00000507778 TRAV22A0A0B4J277 110 aa-0.11□□□□□ -2.43
HMGB1P28-201ENST00000507778 C10orf142B7Z368 130 aa-0.11□□□□□ -2.43
HMGB1P28-201ENST00000507778 KRTAP6-1Q3LI64 71 aa-0.11□□□□□ -2.43
HMGB1P28-201ENST00000507778 MEIG1Q5JSS6 88 aa-0.11□□□□□ -2.43
HMGB1P28-201ENST00000507778 V9GYH0 126 aa-0.11□□□□□ -2.43
HMGB1P28-201ENST00000507778 PHLPP1O60346 1717 aa-0.11□□□□□ -2.43
HMGB1P28-201ENST00000507778 BTAF1O14981 1849 aa-0.11□□□□□ -2.43
HMGB1P28-201ENST00000507778 WNK3Q9BYP7 1800 aa-0.11□□□□□ -2.43
HMGB1P28-201ENST00000507778 TCHHQ07283 1943 aa-0.11□□□□□ -2.43
HMGB1P28-201ENST00000507778 NCOR1O75376 2440 aa-0.12□□□□□ -2.43
HMGB1P28-201ENST00000507778 PPIP5K1Q6PFW1 1433 aa-0.12□□□□□ -2.43
HMGB1P28-201ENST00000507778 PATJQ8NI35 1801 aa-0.12□□□□□ -2.43
HMGB1P28-201ENST00000507778 HMGN1P05114 100 aa-0.12□□□□□ -2.43
HMGB1P28-201ENST00000507778 SPAG11BQ08648 103 aa-0.12□□□□□ -2.43
HMGB1P28-201ENST00000507778 SPAG11AQ6PDA7 123 aa-0.12□□□□□ -2.43
HMGB1P28-201ENST00000507778 SPCS1Q9Y6A9 102 aa-0.12□□□□□ -2.43
HMGB1P28-201ENST00000507778 SCN7AQ01118 1682 aa-0.12□□□□□ -2.43
HMGB1P28-201ENST00000507778 HECTD4Q9Y4D8 3996 aa-0.12□□□□□ -2.43
HMGB1P28-201ENST00000507778 KDM3BQ7LBC6 1761 aa-0.12□□□□□ -2.43
HMGB1P28-201ENST00000507778 TENM4Q6N022 2769 aa-0.12□□□□□ -2.43
HMGB1P28-201ENST00000507778 LAMC1P11047 1609 aa-0.13□□□□□ -2.43
HMGB1P28-201ENST00000507778 SPTBN2O15020 2390 aa-0.13□□□□□ -2.43
HMGB1P28-201ENST00000507778 HAMPP81172 84 aa-0.13□□□□□ -2.43
HMGB1P28-201ENST00000507778 WFDC2Q14508 124 aa-0.13□□□□□ -2.43
HMGB1P28-201ENST00000507778 ALMS1Q8TCU4 4167 aa-0.13□□□□□ -2.43
HMGB1P28-201ENST00000507778 MYH7P12883 1935 aa-0.13□□□□□ -2.43
HMGB1P28-201ENST00000507778 NHSL1Q5SYE7 1610 aa-0.13□□□□□ -2.43
HMGB1P28-201ENST00000507778 ABCA2Q9BZC7 2435 aa-0.14□□□□□ -2.43
HMGB1P28-201ENST00000507778 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.14□□□□□ -2.43
HMGB1P28-201ENST00000507778 PSME4Q14997 1843 aa-0.14□□□□□ -2.43
HMGB1P28-201ENST00000507778 MIF4GDA9UHW6 222 aaKnown RBP-0.14□□□□□ -2.43
HMGB1P28-201ENST00000507778 PRM1P04553 51 aa-0.14□□□□□ -2.43
HMGB1P28-201ENST00000507778 ARAP2Q8WZ64 1704 aa-0.14□□□□□ -2.43
HMGB1P28-201ENST00000507778 CACNA1AO00555 2505 aa-0.14□□□□□ -2.43
HMGB1P28-201ENST00000507778 LRP2P98164 4655 aa-0.14□□□□□ -2.43
HMGB1P28-201ENST00000507778 LRP1BQ9NZR2 4599 aa-0.14□□□□□ -2.43
HMGB1P28-201ENST00000507778 NAIPQ13075 1403 aa-0.14□□□□□ -2.43
HMGB1P28-201ENST00000507778 TET3O43151 1660 aa-0.14□□□□□ -2.43
HMGB1P28-201ENST00000507778 FOCADQ5VW36 1801 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 SBF2Q86WG5 1849 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 CSMD3Q7Z407 3707 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 KMT2AQ03164 3969 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 LRP6O75581 1613 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 SHROOM2Q13796 1616 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 LPAP08519 4548 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 K7EP13 123 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 S100A3P33764 101 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 BTG2P78543 158 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 COX17Q14061 63 aa-0.15□□□□□ -2.43
HMGB1P28-201ENST00000507778 Q56UQ5 140 aa-0.15□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms