RNA–Protein interactions for RNA: ENST00000497318.1

SUPT20H-223, Transcript of SPT20 homolog, SAGA complex component, human

TSL 3

Gene SUPT20H, Length 734 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SUPT20H-223	ENST00000497318		H7C1H1	209 aa		10.34	□□□□□ -0.75
SUPT20H-223	ENST00000497318	PFDN1	O60925	122 aa		10.34	□□□□□ -0.75
SUPT20H-223	ENST00000497318	S100A9	P06702	114 aa	Known RBP	10.34	□□□□□ -0.75
SUPT20H-223	ENST00000497318	CXCL1	P09341	107 aa		10.34	□□□□□ -0.75
SUPT20H-223	ENST00000497318	SULT1A2	P50226	295 aa		10.34	□□□□□ -0.75
SUPT20H-223	ENST00000497318	PRSS3P2	Q8NHM4	247 aa		10.34	□□□□□ -0.75
SUPT20H-223	ENST00000497318	TMEM243	Q9BU79	118 aa		10.34	□□□□□ -0.75
SUPT20H-223	ENST00000497318	RAB19	A4D1S5	217 aa		10.33	□□□□□ -0.76
SUPT20H-223	ENST00000497318		Q6ZRP5	223 aa		10.33	□□□□□ -0.76
SUPT20H-223	ENST00000497318	GNG13	Q9P2W3	67 aa		10.33	□□□□□ -0.76
SUPT20H-223	ENST00000497318	UBE2L6	O14933	153 aa		10.32	□□□□□ -0.76
SUPT20H-223	ENST00000497318	OR5AL1	P0C617	328 aa		10.32	□□□□□ -0.76
SUPT20H-223	ENST00000497318	AP1S3	Q96PC3	154 aa		10.32	□□□□□ -0.76
SUPT20H-223	ENST00000497318	IGLV4-60	A0A075B6I1	120 aa		10.31	□□□□□ -0.76
SUPT20H-223	ENST00000497318	GAGE12H	A6NDE8	117 aa		10.31	□□□□□ -0.76
SUPT20H-223	ENST00000497318	SRSF9	Q13242	221 aa	Known RBP eCLIP	10.31	□□□□□ -0.76
SUPT20H-223	ENST00000497318	CENPW	Q5EE01	88 aa		10.31	□□□□□ -0.76
SUPT20H-223	ENST00000497318	C15orf56	Q8N910	161 aa		10.31	□□□□□ -0.76
SUPT20H-223	ENST00000497318	TPPP3	Q9BW30	176 aa		10.31	□□□□□ -0.76
SUPT20H-223	ENST00000497318	FAM231B	A6NCW3	169 aa		10.3	□□□□□ -0.76
SUPT20H-223	ENST00000497318	C11orf52	Q96A22	123 aa		10.3	□□□□□ -0.76
SUPT20H-223	ENST00000497318		M0QY20	66 aa		10.29	□□□□□ -0.76
SUPT20H-223	ENST00000497318	MGP	P08493	103 aa		10.29	□□□□□ -0.76
SUPT20H-223	ENST00000497318	IGLC6	P0CF74	106 aa		10.29	□□□□□ -0.76
SUPT20H-223	ENST00000497318	HIGD2B	Q4VC39	106 aa		10.29	□□□□□ -0.76
SUPT20H-223	ENST00000497318	GFRA4	Q9GZZ7	299 aa		10.29	□□□□□ -0.76
SUPT20H-223	ENST00000497318	C19orf71	A6NCJ1	209 aa		10.28	□□□□□ -0.76
SUPT20H-223	ENST00000497318	SUMO4	Q6EEV6	95 aa		10.28	□□□□□ -0.76
SUPT20H-223	ENST00000497318	OR2D3	Q8NGH3	330 aa		10.28	□□□□□ -0.76
SUPT20H-223	ENST00000497318	TRBV20OR9-2	A0A075B6H5	130 aa		10.27	□□□□□ -0.77
SUPT20H-223	ENST00000497318		A0A096LNI7	61 aa		10.27	□□□□□ -0.77
SUPT20H-223	ENST00000497318	MANBAL	Q9NQG1	85 aa		10.27	□□□□□ -0.77
SUPT20H-223	ENST00000497318	GVQW2	A0A096LPI5	108 aa	Predicted RBP	10.26	□□□□□ -0.77
SUPT20H-223	ENST00000497318	TRAV1-1	A0A0B4J248	108 aa		10.26	□□□□□ -0.77
SUPT20H-223	ENST00000497318		A0A0U1RQV1	116 aa		10.26	□□□□□ -0.77
SUPT20H-223	ENST00000497318	NKX2-5	P52952	324 aa	Predicted RBP	10.26	□□□□□ -0.77
SUPT20H-223	ENST00000497318	FER1L6-AS1	Q8NA97	138 aa		10.26	□□□□□ -0.77
SUPT20H-223	ENST00000497318	PGLYRP4	Q96LB8	373 aa		10.26	□□□□□ -0.77
SUPT20H-223	ENST00000497318	IGKV3OR2-268	A0A0C4DH90	116 aa		10.25	□□□□□ -0.77
SUPT20H-223	ENST00000497318	AMT	P48728	403 aa		10.25	□□□□□ -0.77
SUPT20H-223	ENST00000497318	EIF5A	P63241	154 aa	Known RBP	10.25	□□□□□ -0.77
SUPT20H-223	ENST00000497318	COTL1	Q14019	142 aa		10.25	□□□□□ -0.77
SUPT20H-223	ENST00000497318	ZNF664	Q8N3J9	261 aa		10.25	□□□□□ -0.77
SUPT20H-223	ENST00000497318	RASL11A	Q6T310	242 aa		10.24	□□□□□ -0.77
SUPT20H-223	ENST00000497318	LYZL1	Q6UWQ5	148 aa		10.24	□□□□□ -0.77
SUPT20H-223	ENST00000497318	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	10.24	□□□□□ -0.77
SUPT20H-223	ENST00000497318	KRTAP9-2	Q9BYQ4	174 aa		10.24	□□□□□ -0.77
SUPT20H-223	ENST00000497318	GNG4	P50150	75 aa		10.23	□□□□□ -0.77
SUPT20H-223	ENST00000497318	MED9	Q9NWA0	146 aa		10.23	□□□□□ -0.77
SUPT20H-223	ENST00000497318	MEF2B	Q02080	365 aa	Predicted RBP	10.22	□□□□□ -0.77
SUPT20H-223	ENST00000497318	AMMECR1L	Q6DCA0	310 aa		10.22	□□□□□ -0.77
SUPT20H-223	ENST00000497318	NIT2	Q9NQR4	276 aa		10.22	□□□□□ -0.77
SUPT20H-223	ENST00000497318	PSORS1C2	Q9UIG4	136 aa		10.22	□□□□□ -0.77
SUPT20H-223	ENST00000497318	TRAV26-2	A0A0B4J265	109 aa		10.21	□□□□□ -0.77
SUPT20H-223	ENST00000497318	NTF3	P20783	257 aa		10.21	□□□□□ -0.77
SUPT20H-223	ENST00000497318	RPS20	P60866	119 aa	Known RBP	10.21	□□□□□ -0.77
SUPT20H-223	ENST00000497318	NUDT10	Q8NFP7	164 aa		10.21	□□□□□ -0.77
SUPT20H-223	ENST00000497318	NUDT11	Q96G61	164 aa		10.21	□□□□□ -0.77
SUPT20H-223	ENST00000497318		K7EN84	100 aa		10.2	□□□□□ -0.78
SUPT20H-223	ENST00000497318	BCL2	P10415	239 aa		10.2	□□□□□ -0.78
SUPT20H-223	ENST00000497318	CACNG7	P62955	275 aa		10.2	□□□□□ -0.78
SUPT20H-223	ENST00000497318	RNASE7	Q9H1E1	156 aa	Known RBP	10.2	□□□□□ -0.78
SUPT20H-223	ENST00000497318	MUC2	Q02817	5179 aa		10.2	□□□□□ -0.78
SUPT20H-223	ENST00000497318	LPA	P08519	4548 aa		10.19	□□□□□ -0.78
SUPT20H-223	ENST00000497318	IFNA1	P01562	189 aa		10.19	□□□□□ -0.78
SUPT20H-223	ENST00000497318	FOXA3	P55318	350 aa	Predicted RBP	10.19	□□□□□ -0.78
SUPT20H-223	ENST00000497318	CARD19	Q96LW7	228 aa		10.19	□□□□□ -0.78
SUPT20H-223	ENST00000497318	IGHV1-58	A0A0C4DH39	117 aa		10.18	□□□□□ -0.78
SUPT20H-223	ENST00000497318	PDE6D	O43924	150 aa		10.18	□□□□□ -0.78
SUPT20H-223	ENST00000497318	TRGC1	P0CF51	173 aa		10.18	□□□□□ -0.78
SUPT20H-223	ENST00000497318	MT-ND6	P03923	174 aa		10.17	□□□□□ -0.78
SUPT20H-223	ENST00000497318	FOXI1	Q12951	378 aa		10.17	□□□□□ -0.78
SUPT20H-223	ENST00000497318	RNASEK	Q6P5S7	137 aa	Known RBP	10.17	□□□□□ -0.78
SUPT20H-223	ENST00000497318	C9orf62	Q8N4C0	152 aa		10.17	□□□□□ -0.78
SUPT20H-223	ENST00000497318	GATD1	Q8NB37	220 aa		10.17	□□□□□ -0.78
SUPT20H-223	ENST00000497318	OCC1	Q8TAD7	63 aa		10.17	□□□□□ -0.78
SUPT20H-223	ENST00000497318		F2Z2F3	143 aa		10.16	□□□□□ -0.78
SUPT20H-223	ENST00000497318	TEX46	H3BTG2	121 aa		10.16	□□□□□ -0.78
SUPT20H-223	ENST00000497318		H7C423	109 aa		10.16	□□□□□ -0.78
SUPT20H-223	ENST00000497318	ZNF561-AS1	K7EIQ3	104 aa		10.16	□□□□□ -0.78
SUPT20H-223	ENST00000497318	CTRL	P40313	264 aa		10.16	□□□□□ -0.78
SUPT20H-223	ENST00000497318	SYCN	Q0VAF6	134 aa		10.16	□□□□□ -0.78
SUPT20H-223	ENST00000497318	TWIST1	Q15672	202 aa		10.16	□□□□□ -0.78
SUPT20H-223	ENST00000497318	TCTE3	Q8IZS6	198 aa		10.16	□□□□□ -0.78
SUPT20H-223	ENST00000497318	RPL39L	Q96EH5	51 aa	Known RBP	10.16	□□□□□ -0.78
SUPT20H-223	ENST00000497318	SMIM12	Q96EX1	92 aa		10.16	□□□□□ -0.78
SUPT20H-223	ENST00000497318	XKRY2	A2RUG3	117 aa		10.15	□□□□□ -0.78
SUPT20H-223	ENST00000497318	XCL1	P47992	114 aa		10.15	□□□□□ -0.78
SUPT20H-223	ENST00000497318	PTTG1IP	P53801	180 aa		10.15	□□□□□ -0.78
SUPT20H-223	ENST00000497318	EIF5AL1	Q6IS14	154 aa	Known RBP	10.15	□□□□□ -0.78
SUPT20H-223	ENST00000497318	ISOC2	Q96AB3	205 aa		10.15	□□□□□ -0.78
SUPT20H-223	ENST00000497318	LOC107984640	A0A0U1RRK4	108 aa		10.14	□□□□□ -0.79
SUPT20H-223	ENST00000497318	NCR2	O95944	276 aa		10.14	□□□□□ -0.79
SUPT20H-223	ENST00000497318	GAGE2B	Q13066	116 aa		10.14	□□□□□ -0.79
SUPT20H-223	ENST00000497318	SLC51B	Q86UW2	128 aa		10.14	□□□□□ -0.79
SUPT20H-223	ENST00000497318	DIRC1	Q969H9	104 aa		10.14	□□□□□ -0.79
SUPT20H-223	ENST00000497318	RPP21	Q9H633	154 aa	Known RBP	10.14	□□□□□ -0.79
SUPT20H-223	ENST00000497318		Q6ZNX1	250 aa		10.13	□□□□□ -0.79
SUPT20H-223	ENST00000497318	OR5A1	Q8NGJ0	315 aa		10.13	□□□□□ -0.79
SUPT20H-223	ENST00000497318	LINC00526	Q96FQ7	95 aa		10.13	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms