RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 DAZ3Q9NR90 486 aaKnown RBP8.61□□□□□ -1.03
HDAC4-210ENST00000493582 HRNRQ86YZ3 2850 aaPredicted RBP8.61□□□□□ -1.03
HDAC4-210ENST00000493582 GRNP28799 593 aaKnown RBP8.61□□□□□ -1.03
HDAC4-210ENST00000493582 NACAE9PAV3 2078 aa8.61□□□□□ -1.03
HDAC4-210ENST00000493582 J3KT08 172 aa8.61□□□□□ -1.03
HDAC4-210ENST00000493582 IGHV3-73A0A0B4J1V6 119 aa8.6□□□□□ -1.03
HDAC4-210ENST00000493582 EDN2P20800 178 aa8.6□□□□□ -1.03
HDAC4-210ENST00000493582 SAA4P35542 130 aa8.6□□□□□ -1.03
HDAC4-210ENST00000493582 SPTAN1Q13813 2472 aaKnown RBP8.6□□□□□ -1.03
HDAC4-210ENST00000493582 CYSTM1Q9H1C7 97 aa8.6□□□□□ -1.03
HDAC4-210ENST00000493582 IGHV3-16A0A0C4DH30 117 aa8.6□□□□□ -1.03
HDAC4-210ENST00000493582 GAGE2AQ6NT46 116 aa8.6□□□□□ -1.03
HDAC4-210ENST00000493582 Q8N2B8 174 aa8.6□□□□□ -1.03
HDAC4-210ENST00000493582 COL12A1Q99715 3063 aa8.6□□□□□ -1.03
HDAC4-210ENST00000493582 RS1O15537 224 aa8.59□□□□□ -1.03
HDAC4-210ENST00000493582 COX7CP15954 63 aa8.59□□□□□ -1.03
HDAC4-210ENST00000493582 ZNF625Q96I27 306 aaPredicted RBP8.59□□□□□ -1.03
HDAC4-210ENST00000493582 RHPN1-AS1Q9BWJ2 59 aa8.59□□□□□ -1.03
HDAC4-210ENST00000493582 hADV29S1A0JD25 119 aa8.59□□□□□ -1.03
HDAC4-210ENST00000493582 TLN1Q9Y490 2541 aaKnown RBP8.59□□□□□ -1.03
HDAC4-210ENST00000493582 LRRC75A-AS1Q8N1F1 130 aa8.59□□□□□ -1.04
HDAC4-210ENST00000493582 C2orf48Q96LS8 159 aa8.59□□□□□ -1.04
HDAC4-210ENST00000493582 PROK1P58294 105 aa8.58□□□□□ -1.04
HDAC4-210ENST00000493582 C9orf85Q96MD7 179 aa8.58□□□□□ -1.04
HDAC4-210ENST00000493582 UBTD1Q9HAC8 227 aa8.58□□□□□ -1.04
HDAC4-210ENST00000493582 Q9UF83 564 aa8.58□□□□□ -1.04
HDAC4-210ENST00000493582 BAALC-AS2P0C853 105 aa8.58□□□□□ -1.04
HDAC4-210ENST00000493582 NDUFA4O00483 81 aa8.57□□□□□ -1.04
HDAC4-210ENST00000493582 TIRAPP58753 221 aa8.57□□□□□ -1.04
HDAC4-210ENST00000493582 C5orf38Q86SI9 138 aa8.57□□□□□ -1.04
HDAC4-210ENST00000493582 C5orf56Q8N8D9 126 aa8.57□□□□□ -1.04
HDAC4-210ENST00000493582 COX7A2LO14548 114 aa8.57□□□□□ -1.04
HDAC4-210ENST00000493582 SIRPDQ9H106 197 aa8.57□□□□□ -1.04
HDAC4-210ENST00000493582 IGHG2P01859 326 aa8.57□□□□□ -1.04
HDAC4-210ENST00000493582 OTOGLQ3ZCN5 2332 aa8.56□□□□□ -1.04
HDAC4-210ENST00000493582 C22orf24Q9Y442 160 aa8.56□□□□□ -1.04
HDAC4-210ENST00000493582 A0A1B0GX51 115 aa8.56□□□□□ -1.04
HDAC4-210ENST00000493582 KIR2DL5BQ8NHK3 375 aa8.56□□□□□ -1.04
HDAC4-210ENST00000493582 CDKN2A-AS1Q9UH64 79 aa8.56□□□□□ -1.04
HDAC4-210ENST00000493582 PYGO1Q9Y3Y4 419 aa8.56□□□□□ -1.04
HDAC4-210ENST00000493582 TRAV13-1A0A0B4J241 112 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 FAM223BA6NKX1 122 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 HTN1P15515 57 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 SDIM1Q6ZPB5 146 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 FAM223AQ8IWN6 122 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 CREBBPQ92793 2442 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 IGHV3OR16-10A0A075B7F0 116 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 TINCRA0A1B0GVN0 87 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 CRYGAP11844 174 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 LINC00308Q8TCZ7 52 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 PEMTQ9UBM1 199 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.55□□□□□ -1.04
HDAC4-210ENST00000493582 IGKV2-29A2NJV5 120 aaPredicted RBP8.55□□□□□ -1.04
HDAC4-210ENST00000493582 ATP5G1P05496 136 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 KLRB1Q12918 225 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 FAM218AQ96MZ4 157 aa8.55□□□□□ -1.04
HDAC4-210ENST00000493582 SPINK13Q1W4C9 94 aa8.54□□□□□ -1.04
HDAC4-210ENST00000493582 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.54□□□□□ -1.04
HDAC4-210ENST00000493582 Q8NA96 180 aa8.54□□□□□ -1.04
HDAC4-210ENST00000493582 Q9HAA7 133 aa8.54□□□□□ -1.04
HDAC4-210ENST00000493582 CXCL5P42830 114 aa8.54□□□□□ -1.04
HDAC4-210ENST00000493582 BEAN1Q3B7T3 259 aa8.54□□□□□ -1.04
HDAC4-210ENST00000493582 DOPEY2Q9Y3R5 2298 aa8.54□□□□□ -1.04
HDAC4-210ENST00000493582 MAP1AP78559 2803 aaPredicted RBP8.53□□□□□ -1.04
HDAC4-210ENST00000493582 KNCNA6PVL3 124 aa8.53□□□□□ -1.04
HDAC4-210ENST00000493582 SOSTDC1Q6X4U4 206 aa8.53□□□□□ -1.04
HDAC4-210ENST00000493582 Q9H8V8 135 aa8.53□□□□□ -1.04
HDAC4-210ENST00000493582 HOXD3P31249 432 aaPredicted RBP8.53□□□□□ -1.04
HDAC4-210ENST00000493582 CIRBPQ14011 172 aaKnown RBP8.53□□□□□ -1.04
HDAC4-210ENST00000493582 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.52□□□□□ -1.049e-7■■■■□ 19.6
HDAC4-210ENST00000493582 IGHV1OR15-1A0A075B7D0 117 aa8.52□□□□□ -1.05
HDAC4-210ENST00000493582 TRACP01848 142 aa8.52□□□□□ -1.05
HDAC4-210ENST00000493582 PTPRQQ9UMZ3 2332 aa8.52□□□□□ -1.05
HDAC4-210ENST00000493582 TIMM17BO60830 172 aa8.52□□□□□ -1.05
HDAC4-210ENST00000493582 RPS28P62857 69 aaKnown RBP8.52□□□□□ -1.05
HDAC4-210ENST00000493582 C19orf54Q5BKX5 351 aa8.52□□□□□ -1.05
HDAC4-210ENST00000493582 OR13C6PQ8NH95 151 aa8.52□□□□□ -1.05
HDAC4-210ENST00000493582 UBE2D4Q9Y2X8 147 aa8.52□□□□□ -1.05
HDAC4-210ENST00000493582 IGHV3-38A0A0C4DH36 116 aa8.51□□□□□ -1.05
HDAC4-210ENST00000493582 IGKV3D-7A0A0C4DH55 119 aa8.51□□□□□ -1.05
HDAC4-210ENST00000493582 PRM2P04554 102 aa8.51□□□□□ -1.05
HDAC4-210ENST00000493582 ATOX1O00244 68 aa8.51□□□□□ -1.05
HDAC4-210ENST00000493582 NDUFA1O15239 70 aa8.51□□□□□ -1.05
HDAC4-210ENST00000493582 COX6A2Q02221 97 aa8.51□□□□□ -1.05
HDAC4-210ENST00000493582 A0A087WVE0 104 aa8.51□□□□□ -1.05
HDAC4-210ENST00000493582 HIST1H4AP62805 103 aaKnown RBP8.51□□□□□ -1.05
HDAC4-210ENST00000493582 DPH3Q96FX2 82 aa8.51□□□□□ -1.05
HDAC4-210ENST00000493582 DSCR8Q96T75 97 aa8.51□□□□□ -1.05
HDAC4-210ENST00000493582 C9orf129Q5T035 196 aaKnown RBP8.5□□□□□ -1.05
HDAC4-210ENST00000493582 LINC00467Q9BRT7 94 aa8.5□□□□□ -1.05
HDAC4-210ENST00000493582 CHCHD7Q9BUK0 85 aa8.5□□□□□ -1.05
HDAC4-210ENST00000493582 OXTP01178 125 aa8.5□□□□□ -1.05
HDAC4-210ENST00000493582 VPS13CQ709C8 3753 aa8.5□□□□□ -1.05
HDAC4-210ENST00000493582 CEP295Q9C0D2 2601 aa8.5□□□□□ -1.05
HDAC4-210ENST00000493582 CDSNQ15517 529 aa8.49□□□□□ -1.05
HDAC4-210ENST00000493582 Q6ZSN1 163 aa8.49□□□□□ -1.05
HDAC4-210ENST00000493582 LY6EQ16553 131 aa8.49□□□□□ -1.05
HDAC4-210ENST00000493582 MOB4Q9Y3A3 225 aa8.49□□□□□ -1.05
HDAC4-210ENST00000493582 INAFM2P0DMQ5 153 aa8.49□□□□□ -1.05
HDAC4-210ENST00000493582 C4orf26Q17RF5 130 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms