RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 NPYP01303 97 aa4.92□□□□□ -1.62
SYNE1-229ENST00000490866 HBDP02042 147 aa4.92□□□□□ -1.62
SYNE1-229ENST00000490866 PRM2P04554 102 aa4.92□□□□□ -1.62
SYNE1-229ENST00000490866 IFI27P40305 119 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-229ENST00000490866 DEFA6Q01524 100 aa4.92□□□□□ -1.62
SYNE1-229ENST00000490866 RNASEKQ6P5S7 137 aaKnown RBP4.92□□□□□ -1.62
SYNE1-229ENST00000490866 NEGR1Q7Z3B1 354 aa4.92□□□□□ -1.62
SYNE1-229ENST00000490866 ZNRF2Q8NHG8 242 aa4.92□□□□□ -1.62
SYNE1-229ENST00000490866 TMEM141Q96I45 108 aa4.92□□□□□ -1.62
SYNE1-229ENST00000490866 JPT2Q9H910 190 aa4.92□□□□□ -1.62
SYNE1-229ENST00000490866 CSDC2Q9Y534 153 aaKnown RBP4.92□□□□□ -1.62
SYNE1-229ENST00000490866 ICOSQ9Y6W8 199 aa4.92□□□□□ -1.62
SYNE1-229ENST00000490866 TRBV25-1A0A075B6N4 114 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 DEFB131BA0A096LNP1 70 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 A0A0J9YWU9 116 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 LOC389332A0A1B0GUA5 103 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 F5H768 121 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-229ENST00000490866 CCL25O15444 150 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 SERF1AO75920 110 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 ZNF25P17030 456 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-229ENST00000490866 AMTP48728 403 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 UBE2D3P61077 147 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 UBE2D2P62837 147 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 C12orf74Q32Q52 190 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 ERASQ7Z444 233 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 SPATA12Q7Z6I5 190 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 NEXN-AS1Q8NBZ9 246 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 ATP6V0E2Q8NHE4 81 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 TIMM21Q9BVV7 248 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 MAP1LC3CQ9BXW4 147 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 KRTAP4-9Q9BYQ8 210 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 PLA2G2DQ9UNK4 145 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 CYSLTR1Q9Y271 337 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 TMA7Q9Y2S6 64 aaKnown RBP4.91□□□□□ -1.62
SYNE1-229ENST00000490866 KLK5Q9Y337 293 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-229ENST00000490866 PYGO1Q9Y3Y4 419 aa4.91□□□□□ -1.62
SYNE1-229ENST00000490866 IGLV2-18A0A075B6J9 118 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 IGHV3-73A0A0B4J1V6 119 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 TRAV26-2A0A0B4J265 109 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 IGHV1-24A0A0C4DH33 117 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 C20orf202A1L168 122 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 UBE2L6O14933 153 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 SEC11AP67812 179 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 Q6ZN92 141 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 HIST3H2BBQ8N257 126 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 TOMM6Q96B49 74 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 TMEM101Q96IK0 257 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 TIMM17AQ99595 171 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 CHCHD7Q9BUK0 85 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 SPANXA1Q9NS26 97 aa4.9□□□□□ -1.63
SYNE1-229ENST00000490866 CMYA5Q8N3K9 4069 aa4.89□□□□□ -1.63
SYNE1-229ENST00000490866 TRAV8-6A0A0B4J262 113 aa4.89□□□□□ -1.63
SYNE1-229ENST00000490866 A0A1B0GUV1 79 aa4.89□□□□□ -1.63
SYNE1-229ENST00000490866 SMKR1H3BMG3 65 aa4.89□□□□□ -1.63
SYNE1-229ENST00000490866 GYPEP15421 78 aa4.89□□□□□ -1.63
SYNE1-229ENST00000490866 PMCHL1Q16048 86 aa4.89□□□□□ -1.63
SYNE1-229ENST00000490866 IQCJQ1A5X6 159 aa4.89□□□□□ -1.63
SYNE1-229ENST00000490866 DGAT2L7PQ6IED9 249 aa4.89□□□□□ -1.63
SYNE1-229ENST00000490866 C20orf203Q8NBC4 194 aa4.89□□□□□ -1.63
SYNE1-229ENST00000490866 RPL39LQ96EH5 51 aaKnown RBP4.89□□□□□ -1.63
SYNE1-229ENST00000490866 CDIP1Q9H305 208 aa4.89□□□□□ -1.63
SYNE1-229ENST00000490866 TRBV6-8A0A0A6YYG3 113 aa4.88□□□□□ -1.63
SYNE1-229ENST00000490866 NUPR2A6NF83 97 aa4.88□□□□□ -1.63
SYNE1-229ENST00000490866 C9orf118A6NHY6 69 aa4.88□□□□□ -1.63
SYNE1-229ENST00000490866 DEFB4AO15263 64 aa4.88□□□□□ -1.63
SYNE1-229ENST00000490866 PRB2P02812 416 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-229ENST00000490866 CCL18P55774 89 aa4.88□□□□□ -1.63
SYNE1-229ENST00000490866 PET117Q6UWS5 81 aa4.88□□□□□ -1.63
SYNE1-229ENST00000490866 C2orf66Q6UXQ4 117 aa4.88□□□□□ -1.63
SYNE1-229ENST00000490866 Q6ZSN1 163 aa4.88□□□□□ -1.63
SYNE1-229ENST00000490866 MRPL52Q86TS9 123 aaKnown RBP4.88□□□□□ -1.63
SYNE1-229ENST00000490866 SCGB3A1Q96QR1 104 aa4.88□□□□□ -1.63
SYNE1-229ENST00000490866 TMEM243Q9BU79 118 aa4.88□□□□□ -1.63
SYNE1-229ENST00000490866 NACAE9PAV3 2078 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 DNAH3Q8TD57 4116 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 TRAV9-2A0A087WT02 112 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 TRAV12-1A0A0B4J245 112 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 GAGE12JA6NER3 117 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 PRSS1P07477 247 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 LINC00694P0DN24 101 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 FABP4P15090 132 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 MRPS36P82909 103 aaKnown RBP4.87□□□□□ -1.63
SYNE1-229ENST00000490866 GAGE1Q13065 139 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 GAGE4Q13068 117 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 GAGE5Q13069 117 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 GAGE13Q4V321 117 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 PDZD11Q5EBL8 140 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 LELP1Q5T871 98 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 AMMECR1LQ6DCA0 310 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 IFI27L1Q96BM0 104 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 HIST1H2BLQ99880 126 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 C2orf88Q9BSF0 95 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 VCX2Q9H322 139 aa4.87□□□□□ -1.63
SYNE1-229ENST00000490866 TSHBP01222 138 aa4.86□□□□□ -1.63
SYNE1-229ENST00000490866 HTN3P15516 51 aa4.86□□□□□ -1.63
SYNE1-229ENST00000490866 PLNP26678 52 aa4.86□□□□□ -1.63
SYNE1-229ENST00000490866 Q6ZTC4 211 aa4.86□□□□□ -1.63
SYNE1-229ENST00000490866 PHLDA1Q8WV24 401 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-229ENST00000490866 VSIG2Q96IQ7 327 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms