RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 A8MWV9 139 aa13.07□□□□□ -0.32
VIM-206ENST00000487938 C10orf126Q8N4M7 172 aa13.07□□□□□ -0.32
VIM-206ENST00000487938 DYNLRB2Q8TF09 96 aa13.07□□□□□ -0.32
VIM-206ENST00000487938 NACAE9PAV3 2078 aa13.07□□□□□ -0.32
VIM-206ENST00000487938 A8MTW9 85 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 MUSTN1Q8IVN3 82 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 LRRC75A-AS1Q8N1F1 130 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 RAX2Q96IS3 184 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 Q96MF0 132 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 IGHV3-38A0A0C4DH36 116 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 EIF4EBP3O60516 100 aaPredicted RBP13.06□□□□□ -0.32
VIM-206ENST00000487938 SCGB1C2P0DMR2 95 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 AZU1P20160 251 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 ZNF415Q09FC8 603 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 Q8N2B8 174 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 PTH2Q96A98 100 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 PYGO1Q9Y3Y4 419 aa13.06□□□□□ -0.32
VIM-206ENST00000487938 TRAV8-3A0A0A6YYJ7 113 aa13.05□□□□□ -0.32
VIM-206ENST00000487938 TMEM238C9JI98 176 aa13.05□□□□□ -0.32
VIM-206ENST00000487938 C4orf3Q8WVX3 66 aa13.05□□□□□ -0.32
VIM-206ENST00000487938 SIGMAR1Q99720 223 aa13.05□□□□□ -0.32
VIM-206ENST00000487938 EDA2RQ9HAV5 297 aa13.05□□□□□ -0.32
VIM-206ENST00000487938 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.05□□□□□ -0.32
VIM-206ENST00000487938 IGKV2-29A2NJV5 120 aaPredicted RBP13.05□□□□□ -0.32
VIM-206ENST00000487938 IGHV3-30-3P0DP02 117 aa13.05□□□□□ -0.32
VIM-206ENST00000487938 AKAP9Q99996 3911 aa13.05□□□□□ -0.32
VIM-206ENST00000487938 H7C2G1 150 aa13.04□□□□□ -0.32
VIM-206ENST00000487938 DEFB114Q30KQ6 69 aa13.04□□□□□ -0.32
VIM-206ENST00000487938 NAV2Q8IVL1 2488 aa13.04□□□□□ -0.32
VIM-206ENST00000487938 SMAGPQ0VAQ4 97 aa13.04□□□□□ -0.32
VIM-206ENST00000487938 CHCHD7Q9BUK0 85 aa13.04□□□□□ -0.32
VIM-206ENST00000487938 MYO9AB2RTY4 2548 aa13.03□□□□□ -0.32
VIM-206ENST00000487938 A0A0J9YXY3 114 aa13.03□□□□□ -0.32
VIM-206ENST00000487938 MRPS36P82909 103 aaKnown RBP13.03□□□□□ -0.32
VIM-206ENST00000487938 FOXI1Q12951 378 aa13.03□□□□□ -0.32
VIM-206ENST00000487938 C11orf44Q8N8P7 122 aa13.03□□□□□ -0.32
VIM-206ENST00000487938 C11orf72Q8NBR9 251 aa13.03□□□□□ -0.32
VIM-206ENST00000487938 TIMM21Q9BVV7 248 aa13.03□□□□□ -0.32
VIM-206ENST00000487938 A8MZ25 164 aa13.02□□□□□ -0.32
VIM-206ENST00000487938 CUBNO60494 3623 aa13.02□□□□□ -0.32
VIM-206ENST00000487938 LYRM7Q5U5X0 104 aa13.02□□□□□ -0.33
VIM-206ENST00000487938 C1QTNF4Q9BXJ3 329 aa13.02□□□□□ -0.33
VIM-206ENST00000487938 XCL2Q9UBD3 114 aa13.02□□□□□ -0.33
VIM-206ENST00000487938 TMEM263Q8WUH6 116 aaKnown RBP13.01□□□□□ -0.33
VIM-206ENST00000487938 LINC00467Q9BRT7 94 aa13.01□□□□□ -0.33
VIM-206ENST00000487938 UBE2D4Q9Y2X8 147 aa13.01□□□□□ -0.33
VIM-206ENST00000487938 EPG5Q9HCE0 2579 aa13.01□□□□□ -0.33
VIM-206ENST00000487938 PRRC2AP48634 2157 aaKnown RBP13.01□□□□□ -0.33
VIM-206ENST00000487938 IGHV3OR16-12A0A075B7B8 117 aa13.01□□□□□ -0.33
VIM-206ENST00000487938 IGHV3-33P01772 117 aa13□□□□□ -0.33
VIM-206ENST00000487938 SPATA25Q9BR10 227 aa13□□□□□ -0.33
VIM-206ENST00000487938 A0A1W2PRX2 142 aa13□□□□□ -0.33
VIM-206ENST00000487938 CHD6Q8TD26 2715 aa13□□□□□ -0.33
VIM-206ENST00000487938 TLN2Q9Y4G6 2542 aa13□□□□□ -0.33
VIM-206ENST00000487938 TRBV20-1A0A075B6N2 111 aa12.99□□□□□ -0.33
VIM-206ENST00000487938 INSP01308 110 aa12.99□□□□□ -0.33
VIM-206ENST00000487938 SPINK8P0C7L1 97 aa12.99□□□□□ -0.33
VIM-206ENST00000487938 Q6ZUT4 128 aa12.99□□□□□ -0.33
VIM-206ENST00000487938 ERG28Q9UKR5 140 aa12.99□□□□□ -0.33
VIM-206ENST00000487938 IGHV3-53P01767 116 aa12.99□□□□□ -0.33
VIM-206ENST00000487938 PRSS2P07478 247 aa12.99□□□□□ -0.33
VIM-206ENST00000487938 IGHV1-58A0A0C4DH39 117 aa12.98□□□□□ -0.33
VIM-206ENST00000487938 PIK3CD-AS1Q5SR53 167 aa12.98□□□□□ -0.33
VIM-206ENST00000487938 Q6ZSV7 163 aa12.98□□□□□ -0.33
VIM-206ENST00000487938 KRTAP1-3Q8IUG1 177 aa12.98□□□□□ -0.33
VIM-206ENST00000487938 CRYBA4P53673 196 aa12.97□□□□□ -0.33
VIM-206ENST00000487938 ADAMTSL4-AS1Q5T5F5 129 aa12.97□□□□□ -0.33
VIM-206ENST00000487938 SPANXA1Q9NS26 97 aa12.97□□□□□ -0.33
VIM-206ENST00000487938 WNK1Q9H4A3 2382 aa12.97□□□□□ -0.33
VIM-206ENST00000487938 TINCRA0A1B0GVN0 87 aa12.97□□□□□ -0.33
VIM-206ENST00000487938 ATP6V0E2Q8NHE4 81 aa12.97□□□□□ -0.33
VIM-206ENST00000487938 CARD19Q96LW7 228 aa12.97□□□□□ -0.33
VIM-206ENST00000487938 LITAFQ99732 161 aa12.97□□□□□ -0.33
VIM-206ENST00000487938 NDUFA12Q9UI09 145 aa12.97□□□□□ -0.33
VIM-206ENST00000487938 NPC2P61916 151 aa12.96□□□□□ -0.33
VIM-206ENST00000487938 BEAN1Q3B7T3 259 aa12.96□□□□□ -0.33
VIM-206ENST00000487938 ODF3L2Q3SX64 289 aa12.96□□□□□ -0.33
VIM-206ENST00000487938 A0A0B4J2C4 111 aa12.96□□□□□ -0.34
VIM-206ENST00000487938 RS1O15537 224 aa12.96□□□□□ -0.34
VIM-206ENST00000487938 Q1RN00 199 aa12.96□□□□□ -0.34
VIM-206ENST00000487938 VSIG2Q96IQ7 327 aa12.96□□□□□ -0.34
VIM-206ENST00000487938 NBPF19A0A087WUL8 3843 aa12.96□□□□□ -0.34
VIM-206ENST00000487938 SONP18583 2426 aaKnown RBP12.95□□□□□ -0.34
VIM-206ENST00000487938 STHQ8IWL8 128 aa12.95□□□□□ -0.34
VIM-206ENST00000487938 DNAJC30Q96LL9 226 aa12.95□□□□□ -0.34
VIM-206ENST00000487938 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.94□□□□□ -0.34
VIM-206ENST00000487938 TEN1Q86WV5 123 aa12.94□□□□□ -0.34
VIM-206ENST00000487938 C1orf158Q8N1D5 194 aa12.94□□□□□ -0.34
VIM-206ENST00000487938 GEMIN7Q9H840 131 aaKnown RBP12.94□□□□□ -0.34
VIM-206ENST00000487938 NF1P21359 2839 aa12.94□□□□□ -0.34
VIM-206ENST00000487938 TRGV1A0A0A0MS02 117 aa12.93□□□□□ -0.34
VIM-206ENST00000487938 SBSPONQ8IVN8 264 aa12.93□□□□□ -0.34
VIM-206ENST00000487938 APCP25054 2843 aa12.93□□□□□ -0.34
VIM-206ENST00000487938 C9JAW5 83 aa12.92□□□□□ -0.34
VIM-206ENST00000487938 FHL3Q13643 280 aa12.92□□□□□ -0.34
VIM-206ENST00000487938 CDKN2A-AS1Q9UH64 79 aa12.92□□□□□ -0.34
VIM-206ENST00000487938 DGAT2L7PQ6IED9 249 aa12.92□□□□□ -0.34
VIM-206ENST00000487938 ANKRD29Q8N6D5 301 aa12.92□□□□□ -0.34
VIM-206ENST00000487938 PPDPFLQ8WWR9 84 aa12.92□□□□□ -0.34
VIM-206ENST00000487938 DNAJC9-AS1A6NH13 148 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms