RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 UBR5O95071 2799 aaPredicted RBP9.31□□□□□ -0.92
SHROOM3-208ENST00000486758 CCDC179H3BU77 68 aa9.3□□□□□ -0.92
SHROOM3-208ENST00000486758 Q8N1Y9 231 aa9.3□□□□□ -0.92
SHROOM3-208ENST00000486758 ZFAND3Q9H8U3 227 aa9.3□□□□□ -0.92
SHROOM3-208ENST00000486758 TSPEAR-AS2P59090 65 aa9.29□□□□□ -0.92
SHROOM3-208ENST00000486758 FHL3Q13643 280 aa9.29□□□□□ -0.92
SHROOM3-208ENST00000486758 ZNF580Q9UK33 172 aa9.29□□□□□ -0.92
SHROOM3-208ENST00000486758 DEFB112Q30KQ8 113 aa9.29□□□□□ -0.92
SHROOM3-208ENST00000486758 LINC01620Q4KN68 170 aa9.29□□□□□ -0.92
SHROOM3-208ENST00000486758 A8MZ25 164 aa9.29□□□□□ -0.92
SHROOM3-208ENST00000486758 B4DSR2 109 aa9.29□□□□□ -0.92
SHROOM3-208ENST00000486758 PIFOQ8TCI5 191 aa9.29□□□□□ -0.92
SHROOM3-208ENST00000486758 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.28□□□□□ -0.92
SHROOM3-208ENST00000486758 CRLF1O75462 422 aa9.28□□□□□ -0.92
SHROOM3-208ENST00000486758 Q6ZSV7 163 aa9.28□□□□□ -0.92
SHROOM3-208ENST00000486758 ZNF575Q86XF7 245 aa9.28□□□□□ -0.92
SHROOM3-208ENST00000486758 IGHV3-16A0A0C4DH30 117 aa9.28□□□□□ -0.92
SHROOM3-208ENST00000486758 FAM223BA6NKX1 122 aa9.28□□□□□ -0.92
SHROOM3-208ENST00000486758 M0QXV9 152 aa9.28□□□□□ -0.92
SHROOM3-208ENST00000486758 FAM223AQ8IWN6 122 aa9.28□□□□□ -0.92
SHROOM3-208ENST00000486758 CNFNQ9BYD5 112 aa9.28□□□□□ -0.92
SHROOM3-208ENST00000486758 NDUFV3P56181 108 aaKnown RBP9.27□□□□□ -0.92
SHROOM3-208ENST00000486758 ATP6V0E2Q8NHE4 81 aa9.27□□□□□ -0.93
SHROOM3-208ENST00000486758 TMEM190Q8WZ59 177 aa9.27□□□□□ -0.93
SHROOM3-208ENST00000486758 NDUFA12Q9UI09 145 aa9.27□□□□□ -0.93
SHROOM3-208ENST00000486758 PRM2P04554 102 aa9.27□□□□□ -0.93
SHROOM3-208ENST00000486758 C9orf47Q6ZRZ4 202 aa9.27□□□□□ -0.93
SHROOM3-208ENST00000486758 DEFB131AP59861 70 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 UBE2E2Q96LR5 201 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 CHCHD5Q9BSY4 110 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 MDFICQ9P1T7 246 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 ZNRF2Q8NHG8 242 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 CLPSL1A2RUU4 121 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 CYSRT1A8MQ03 144 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 NDUFA4O00483 81 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 IGHV3-53P01767 116 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 P0DMU3 169 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 FAM231AP0DMU4 169 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 FAM231CP0DMU5 169 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 Q8N6K4 173 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 TOMM7Q9P0U1 55 aa9.26□□□□□ -0.93
SHROOM3-208ENST00000486758 IGHV3-30P01768 117 aa9.25□□□□□ -0.93
SHROOM3-208ENST00000486758 IGHV3-30-5P0DP03 117 aa9.25□□□□□ -0.93
SHROOM3-208ENST00000486758 UBE2D1P51668 147 aa9.25□□□□□ -0.93
SHROOM3-208ENST00000486758 LINC01587Q99440 93 aa9.25□□□□□ -0.93
SHROOM3-208ENST00000486758 ZFAND2AQ8N6M9 145 aa9.25□□□□□ -0.93
SHROOM3-208ENST00000486758 RNASE1P07998 156 aaKnown RBP9.25□□□□□ -0.93
SHROOM3-208ENST00000486758 SLC25A29Q8N8R3 303 aa9.25□□□□□ -0.93
SHROOM3-208ENST00000486758 USMG5Q96IX5 58 aa9.25□□□□□ -0.93
SHROOM3-208ENST00000486758 TMEM141Q96I45 108 aa9.24□□□□□ -0.93
SHROOM3-208ENST00000486758 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.24□□□□□ -0.93
SHROOM3-208ENST00000486758 IGKV2-29A2NJV5 120 aaPredicted RBP9.24□□□□□ -0.93
SHROOM3-208ENST00000486758 AVPP01185 164 aa9.24□□□□□ -0.93
SHROOM3-208ENST00000486758 CIRBPQ14011 172 aaKnown RBP9.24□□□□□ -0.93
SHROOM3-208ENST00000486758 IGHV3-33P01772 117 aa9.23□□□□□ -0.93
SHROOM3-208ENST00000486758 PSMG3-AS1Q96PY0 264 aa9.23□□□□□ -0.93
SHROOM3-208ENST00000486758 TRAV13-1A0A0B4J241 112 aa9.23□□□□□ -0.93
SHROOM3-208ENST00000486758 TRIAP1O43715 76 aa9.23□□□□□ -0.93
SHROOM3-208ENST00000486758 C10orf105Q8TEF2 133 aa9.23□□□□□ -0.93
SHROOM3-208ENST00000486758 FLNAP21333 2647 aaKnown RBP9.23□□□□□ -0.93
SHROOM3-208ENST00000486758 NF1P21359 2839 aa9.23□□□□□ -0.93
SHROOM3-208ENST00000486758 MRPL23Q16540 153 aaKnown RBP9.23□□□□□ -0.93
SHROOM3-208ENST00000486758 RNASE3P12724 160 aaKnown RBP9.22□□□□□ -0.93
SHROOM3-208ENST00000486758 TEX15Q9BXT5 2789 aa9.22□□□□□ -0.93
SHROOM3-208ENST00000486758 FAM236AA0A1B0GUQ0 79 aa9.22□□□□□ -0.93
SHROOM3-208ENST00000486758 FAM236BA0A1B0GV22 79 aa9.22□□□□□ -0.93
SHROOM3-208ENST00000486758 UBE2D3P61077 147 aa9.22□□□□□ -0.93
SHROOM3-208ENST00000486758 UBE2D2P62837 147 aa9.22□□□□□ -0.93
SHROOM3-208ENST00000486758 EBI3Q14213 229 aa9.22□□□□□ -0.93
SHROOM3-208ENST00000486758 XCL2Q9UBD3 114 aa9.22□□□□□ -0.93
SHROOM3-208ENST00000486758 SRSF2Q01130 221 aaKnown RBP9.22□□□□□ -0.93
SHROOM3-208ENST00000486758 C9orf153Q5TBE3 101 aa9.22□□□□□ -0.93
SHROOM3-208ENST00000486758 NBEAL2Q6ZNJ1 2754 aa9.21□□□□□ -0.93
SHROOM3-208ENST00000486758 CRYGDP07320 174 aa9.21□□□□□ -0.93
SHROOM3-208ENST00000486758 ELANEP08246 267 aa9.21□□□□□ -0.93
SHROOM3-208ENST00000486758 SLURP1P55000 103 aa9.21□□□□□ -0.93
SHROOM3-208ENST00000486758 GAGE2AQ6NT46 116 aa9.21□□□□□ -0.93
SHROOM3-208ENST00000486758 IGLV4-69A0A075B6H9 119 aa9.21□□□□□ -0.94
SHROOM3-208ENST00000486758 HOXD3P31249 432 aaPredicted RBP9.21□□□□□ -0.94
SHROOM3-208ENST00000486758 EDA2RQ9HAV5 297 aa9.21□□□□□ -0.94
SHROOM3-208ENST00000486758 ICOSQ9Y6W8 199 aa9.21□□□□□ -0.94
SHROOM3-208ENST00000486758 IGHV3-30-3P0DP02 117 aa9.21□□□□□ -0.94
SHROOM3-208ENST00000486758 APRG1Q8IVJ8 170 aa9.21□□□□□ -0.94
SHROOM3-208ENST00000486758 RHODO00212 210 aa9.2□□□□□ -0.94
SHROOM3-208ENST00000486758 I3L3M4 83 aa9.2□□□□□ -0.94
SHROOM3-208ENST00000486758 LEPROTO15243 131 aa9.2□□□□□ -0.94
SHROOM3-208ENST00000486758 OR13C6PQ8NH95 151 aa9.2□□□□□ -0.94
SHROOM3-208ENST00000486758 MXRA5Q9NR99 2828 aa9.2□□□□□ -0.94
SHROOM3-208ENST00000486758 PROK1P58294 105 aa9.2□□□□□ -0.94
SHROOM3-208ENST00000486758 TRGV11A0A075B6L2 103 aa9.19□□□□□ -0.94
SHROOM3-208ENST00000486758 A0A0J9YXY3 114 aa9.19□□□□□ -0.94
SHROOM3-208ENST00000486758 TSHBP01222 138 aa9.19□□□□□ -0.94
SHROOM3-208ENST00000486758 DNAL4O96015 105 aa9.19□□□□□ -0.94
SHROOM3-208ENST00000486758 ZNF22P17026 224 aaPredicted RBP9.19□□□□□ -0.94
SHROOM3-208ENST00000486758 CFHR3Q02985 330 aa9.19□□□□□ -0.94
SHROOM3-208ENST00000486758 TMEM101Q96IK0 257 aa9.19□□□□□ -0.94
SHROOM3-208ENST00000486758 TRBV10-2A0A0K0K1G8 114 aa9.18□□□□□ -0.94
SHROOM3-208ENST00000486758 IGHG2P01859 326 aa9.18□□□□□ -0.94
SHROOM3-208ENST00000486758 C11orf68Q9H3H3 251 aaKnown RBP9.18□□□□□ -0.94
SHROOM3-208ENST00000486758 IGHV4OR15-8A0A075B7B6 117 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 163.6 ms