RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 TMEM126AQ9H061 195 aa8.32□□□□□ -1.08
HDAC6-228ENST00000486227 KLK5Q9Y337 293 aaPredicted RBP8.32□□□□□ -1.08
HDAC6-228ENST00000486227 ICOSQ9Y6W8 199 aa8.32□□□□□ -1.08
HDAC6-228ENST00000486227 IGKV2D-24A0A075B6R9 120 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 ZFP2Q6ZN57 461 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 MUSTN1Q8IVN3 82 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 TRANK1O15050 2925 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 C11orf86A6NJI1 115 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 TCL1BO95988 128 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 TRBV10-2A0A0K0K1G8 114 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 AVPP01185 164 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 IGLV2-11P01706 119 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 CRIP1P50238 77 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 C20orf173Q96LM9 149 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 DSCAML1Q8TD84 2053 aa8.31□□□□□ -1.08
HDAC6-228ENST00000486227 PRSS47A8MTI9 375 aa8.3□□□□□ -1.08
HDAC6-228ENST00000486227 GYPEP15421 78 aa8.3□□□□□ -1.08
HDAC6-228ENST00000486227 TIMM17AQ99595 171 aa8.3□□□□□ -1.08
HDAC6-228ENST00000486227 Q9HAA7 133 aa8.3□□□□□ -1.08
HDAC6-228ENST00000486227 H3BT86 120 aa8.3□□□□□ -1.08
HDAC6-228ENST00000486227 KRTAP10-9P60411 292 aa8.3□□□□□ -1.08
HDAC6-228ENST00000486227 MAPKAPK5-AS1Q8N8E1 139 aa8.3□□□□□ -1.08
HDAC6-228ENST00000486227 C1orf43Q9BWL3 253 aa8.3□□□□□ -1.08
HDAC6-228ENST00000486227 PRUNE2Q8WUY3 3088 aa8.3□□□□□ -1.08
HDAC6-228ENST00000486227 HILS1P60008 231 aa8.29□□□□□ -1.08
HDAC6-228ENST00000486227 RPL39P62891 51 aaKnown RBP8.29□□□□□ -1.08
HDAC6-228ENST00000486227 HIST2H2BDQ6DRA6 164 aa8.29□□□□□ -1.08
HDAC6-228ENST00000486227 DNAJC30Q96LL9 226 aa8.29□□□□□ -1.08
HDAC6-228ENST00000486227 K7EQG2 157 aa8.29□□□□□ -1.08
HDAC6-228ENST00000486227 TRACP01848 142 aa8.29□□□□□ -1.08
HDAC6-228ENST00000486227 PFN2P35080 140 aa8.29□□□□□ -1.08
HDAC6-228ENST00000486227 NDUFV3P56181 108 aaKnown RBP8.29□□□□□ -1.08
HDAC6-228ENST00000486227 CLUHP3Q96NS8 147 aa8.29□□□□□ -1.08
HDAC6-228ENST00000486227 A0A0C4DFX4 3053 aa8.29□□□□□ -1.08
HDAC6-228ENST00000486227 MED14OSP0DP75 135 aa8.28□□□□□ -1.08
HDAC6-228ENST00000486227 CLPSL2Q6UWE3 100 aa8.28□□□□□ -1.08
HDAC6-228ENST00000486227 MAP6D1Q9H9H5 199 aa8.28□□□□□ -1.08
HDAC6-228ENST00000486227 ADAMTS20P59510 1910 aa8.28□□□□□ -1.08
HDAC6-228ENST00000486227 SOCS3O14543 225 aa8.28□□□□□ -1.08
HDAC6-228ENST00000486227 NKAPP1Q8N9T2 125 aa8.28□□□□□ -1.08
HDAC6-228ENST00000486227 ESM1Q9NQ30 184 aa8.28□□□□□ -1.08
HDAC6-228ENST00000486227 A0A0J9YXV3 536 aa8.28□□□□□ -1.08
HDAC6-228ENST00000486227 DEFB4AO15263 64 aa8.28□□□□□ -1.08
HDAC6-228ENST00000486227 F8W735 103 aaPredicted RBP8.27□□□□□ -1.09
HDAC6-228ENST00000486227 Q6ZQT7 251 aa8.27□□□□□ -1.09
HDAC6-228ENST00000486227 F8WEM9 126 aa8.27□□□□□ -1.09
HDAC6-228ENST00000486227 RNF185Q96GF1 192 aa8.27□□□□□ -1.09
HDAC6-228ENST00000486227 FAM236AA0A1B0GUQ0 79 aa8.27□□□□□ -1.09
HDAC6-228ENST00000486227 FAM236BA0A1B0GV22 79 aa8.27□□□□□ -1.09
HDAC6-228ENST00000486227 CFAP126Q5VTH2 177 aa8.27□□□□□ -1.09
HDAC6-228ENST00000486227 LINC01006Q8NI28 216 aa8.27□□□□□ -1.09
HDAC6-228ENST00000486227 LGALS9O00182 355 aa8.27□□□□□ -1.09
HDAC6-228ENST00000486227 NEXN-AS1Q8NBZ9 246 aa8.27□□□□□ -1.09
HDAC6-228ENST00000486227 BBC3Q96PG8 261 aaPredicted RBP8.27□□□□□ -1.09
HDAC6-228ENST00000486227 ACANP16112 2415 aa8.26□□□□□ -1.09
HDAC6-228ENST00000486227 PSMB8P28062 276 aa8.26□□□□□ -1.09
HDAC6-228ENST00000486227 HERVK_113P63121 156 aa8.26□□□□□ -1.09
HDAC6-228ENST00000486227 ZFAND2AQ8N6M9 145 aa8.25□□□□□ -1.09
HDAC6-228ENST00000486227 PSMG3-AS1Q96PY0 264 aa8.25□□□□□ -1.09
HDAC6-228ENST00000486227 DEFB114Q30KQ6 69 aa8.25□□□□□ -1.09
HDAC6-228ENST00000486227 UNC80Q8N2C7 3258 aa8.25□□□□□ -1.09
HDAC6-228ENST00000486227 A0A0B4J2C4 111 aa8.25□□□□□ -1.09
HDAC6-228ENST00000486227 K7EQD1 137 aa8.25□□□□□ -1.09
HDAC6-228ENST00000486227 NXPH4O95158 308 aa8.25□□□□□ -1.09
HDAC6-228ENST00000486227 BAALC-AS2P0C853 105 aa8.25□□□□□ -1.09
HDAC6-228ENST00000486227 TRAV13-2A0A0B4J235 113 aa8.25□□□□□ -1.09
HDAC6-228ENST00000486227 ZNF702PQ9H963 129 aa8.25□□□□□ -1.09
HDAC6-228ENST00000486227 HHLA3Q9XRX5 114 aa8.25□□□□□ -1.09
HDAC6-228ENST00000486227 XCL1P47992 114 aa8.24□□□□□ -1.09
HDAC6-228ENST00000486227 HERV-K104P63124 156 aa8.24□□□□□ -1.09
HDAC6-228ENST00000486227 SLC25A29Q8N8R3 303 aa8.24□□□□□ -1.09
HDAC6-228ENST00000486227 FLNBO75369 2602 aaKnown RBP8.24□□□□□ -1.09
HDAC6-228ENST00000486227 BPTFQ12830 3046 aa8.24□□□□□ -1.09
HDAC6-228ENST00000486227 PKIGQ9Y2B9 76 aa8.24□□□□□ -1.09
HDAC6-228ENST00000486227 TRBV7-3A0A075B6L6 115 aa8.24□□□□□ -1.09
HDAC6-228ENST00000486227 XGP55808 180 aa8.24□□□□□ -1.09
HDAC6-228ENST00000486227 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.24□□□□□ -1.09
HDAC6-228ENST00000486227 C11orf45Q8TAV5 145 aa8.24□□□□□ -1.09
HDAC6-228ENST00000486227 RAI1Q7Z5J4 1906 aaPredicted RBP8.23□□□□□ -1.09
HDAC6-228ENST00000486227 J3KT08 172 aa8.23□□□□□ -1.09
HDAC6-228ENST00000486227 TMEM263Q8WUH6 116 aaKnown RBP8.23□□□□□ -1.09
HDAC6-228ENST00000486227 ATOX1O00244 68 aa8.23□□□□□ -1.09
HDAC6-228ENST00000486227 SMR3AQ99954 134 aa8.23□□□□□ -1.09
HDAC6-228ENST00000486227 DAZ2Q13117 558 aaKnown RBP8.23□□□□□ -1.09
HDAC6-228ENST00000486227 DAZ4Q86SG3 579 aaKnown RBP8.23□□□□□ -1.09
HDAC6-228ENST00000486227 DAZ3Q9NR90 486 aaKnown RBP8.23□□□□□ -1.09
HDAC6-228ENST00000486227 IGLV1-40P01703 118 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 IGHV3-30P01768 117 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 IGHV3-33P01772 117 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 IGHV3-30-3P0DP02 117 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 IGHV3-30-5P0DP03 117 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 C5orf38Q86SI9 138 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 C18orf65Q6ZTR6 163 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 LAMTOR3Q9UHA4 124 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 PCSK5Q92824 1860 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 P0DMU3 169 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 FAM231AP0DMU4 169 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 FAM231CP0DMU5 169 aa8.22□□□□□ -1.09
HDAC6-228ENST00000486227 OPRPNQ99935 248 aaPredicted RBP8.22□□□□□ -1.09
HDAC6-228ENST00000486227 Q9H8V8 135 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms