RNA–Protein interactions for RNA: ENST00000485645.5

SMC4-216, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-216ENST00000485645 C9orf163Q8N9P6 203 aa11.08□□□□□ -0.64
SMC4-216ENST00000485645 RNASE7Q9H1E1 156 aaKnown RBP11.08□□□□□ -0.64
SMC4-216ENST00000485645 TRGC1P0CF51 173 aa11.07□□□□□ -0.64
SMC4-216ENST00000485645 RASL11AQ6T310 242 aa11.07□□□□□ -0.64
SMC4-216ENST00000485645 SMIM7Q9BQ49 75 aa11.07□□□□□ -0.64
SMC4-216ENST00000485645 RPP21Q9H633 154 aaKnown RBP11.07□□□□□ -0.64
SMC4-216ENST00000485645 FAT3Q8TDW7 4589 aa11.07□□□□□ -0.64
SMC4-216ENST00000485645 PKHD1L1Q86WI1 4243 aa11.06□□□□□ -0.64
SMC4-216ENST00000485645 IGLV10-54A0A075B6I4 117 aa11.06□□□□□ -0.64
SMC4-216ENST00000485645 SRP19P09132 144 aaKnown RBP11.06□□□□□ -0.64
SMC4-216ENST00000485645 LYZL1Q6UWQ5 148 aa11.06□□□□□ -0.64
SMC4-216ENST00000485645 CLRN3Q8NCR9 226 aa11.06□□□□□ -0.64
SMC4-216ENST00000485645 TMEM243Q9BU79 118 aa11.06□□□□□ -0.64
SMC4-216ENST00000485645 TRAV8-4A0A0B4J246 113 aa11.05□□□□□ -0.64
SMC4-216ENST00000485645 A0A1B0GUV1 79 aa11.05□□□□□ -0.64
SMC4-216ENST00000485645 OXTP01178 125 aa11.05□□□□□ -0.64
SMC4-216ENST00000485645 NTF3P20783 257 aa11.05□□□□□ -0.64
SMC4-216ENST00000485645 CTRLP40313 264 aa11.05□□□□□ -0.64
SMC4-216ENST00000485645 RPL37AP61513 92 aaKnown RBP11.05□□□□□ -0.64
SMC4-216ENST00000485645 WDR73Q6P4I2 378 aa11.05□□□□□ -0.64
SMC4-216ENST00000485645 C20orf203Q8NBC4 194 aa11.05□□□□□ -0.64
SMC4-216ENST00000485645 DPH3P1Q9H4G8 78 aa11.05□□□□□ -0.64
SMC4-216ENST00000485645 NIT2Q9NQR4 276 aa11.05□□□□□ -0.64
SMC4-216ENST00000485645 ZNF727A8MUV8 499 aa11.04□□□□□ -0.64
SMC4-216ENST00000485645 FAM231DQ6ZW35 169 aa11.04□□□□□ -0.64
SMC4-216ENST00000485645 PGLYRP4Q96LB8 373 aa11.04□□□□□ -0.64
SMC4-216ENST00000485645 IGLV4-60A0A075B6I1 120 aa11.03□□□□□ -0.64
SMC4-216ENST00000485645 LINC01551Q86U37 167 aa11.03□□□□□ -0.64
SMC4-216ENST00000485645 CNFNQ9BYD5 112 aa11.03□□□□□ -0.64
SMC4-216ENST00000485645 UBE2L6O14933 153 aa11.02□□□□□ -0.65
SMC4-216ENST00000485645 GATCO43716 136 aaKnown RBP11.02□□□□□ -0.65
SMC4-216ENST00000485645 SDIM1Q6ZPB5 146 aa11.02□□□□□ -0.65
SMC4-216ENST00000485645 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.02□□□□□ -0.65
SMC4-216ENST00000485645 hDV102S1A0JD36 115 aa11.01□□□□□ -0.65
SMC4-216ENST00000485645 A8MWL6 223 aa11.01□□□□□ -0.65
SMC4-216ENST00000485645 CNBPP62633 177 aaKnown RBP11.01□□□□□ -0.65
SMC4-216ENST00000485645 COTL1Q14019 142 aa11.01□□□□□ -0.65
SMC4-216ENST00000485645 TWIST1Q15672 202 aa11.01□□□□□ -0.65
SMC4-216ENST00000485645 FAM74A3Q4VXF1 159 aa11.01□□□□□ -0.65
SMC4-216ENST00000485645 CT83Q5H943 113 aa11.01□□□□□ -0.65
SMC4-216ENST00000485645 SERTAD4-AS1Q5TG53 156 aa11.01□□□□□ -0.65
SMC4-216ENST00000485645 GTSF1Q8WW33 167 aa11.01□□□□□ -0.65
SMC4-216ENST00000485645 GFRA4Q9GZZ7 299 aa11.01□□□□□ -0.65
SMC4-216ENST00000485645 SMDT1Q9H4I9 107 aa11.01□□□□□ -0.65
SMC4-216ENST00000485645 C9JQL5 133 aa11□□□□□ -0.65
SMC4-216ENST00000485645 AMTP48728 403 aa11□□□□□ -0.65
SMC4-216ENST00000485645 PEA15Q15121 130 aa11□□□□□ -0.65
SMC4-216ENST00000485645 AP5S1Q9NUS5 200 aa11□□□□□ -0.65
SMC4-216ENST00000485645 PANO1I0J062 215 aa10.99□□□□□ -0.65
SMC4-216ENST00000485645 SRSF3P84103 164 aaKnown RBP10.99□□□□□ -0.65
SMC4-216ENST00000485645 TMEM241Q24JQ0 296 aa10.99□□□□□ -0.65
SMC4-216ENST00000485645 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.98□□□□□ -0.65
SMC4-216ENST00000485645 FOXA3P55318 350 aaPredicted RBP10.98□□□□□ -0.65
SMC4-216ENST00000485645 OSTCQ9NRP0 149 aa10.98□□□□□ -0.65
SMC4-216ENST00000485645 IGHV3-64A0A075B6Q5 118 aa10.97□□□□□ -0.65
SMC4-216ENST00000485645 GATD1Q8NB37 220 aa10.97□□□□□ -0.65
SMC4-216ENST00000485645 TRAV26-2A0A0B4J265 109 aa10.96□□□□□ -0.65
SMC4-216ENST00000485645 HNRNPA3P51991 378 aaKnown RBP10.96□□□□□ -0.65
SMC4-216ENST00000485645 CIRBPQ14011 172 aaKnown RBP10.96□□□□□ -0.65
SMC4-216ENST00000485645 SMIM15Q7Z3B0 74 aa10.96□□□□□ -0.65
SMC4-216ENST00000485645 TSKUQ8WUA8 353 aa10.96□□□□□ -0.65
SMC4-216ENST00000485645 DPH3Q96FX2 82 aa10.96□□□□□ -0.65
SMC4-216ENST00000485645 NAT8Q9UHE5 227 aa10.96□□□□□ -0.65
SMC4-216ENST00000485645 FAM231BA6NCW3 169 aa10.95□□□□□ -0.66
SMC4-216ENST00000485645 SLPIP03973 132 aa10.95□□□□□ -0.66
SMC4-216ENST00000485645 RPL23P62829 140 aaKnown RBP10.95□□□□□ -0.66
SMC4-216ENST00000485645 ISOC2Q96AB3 205 aa10.95□□□□□ -0.66
SMC4-216ENST00000485645 HMCN2Q8NDA2 5059 aa10.95□□□□□ -0.66
SMC4-216ENST00000485645 IGKV3OR2-268A0A0C4DH90 116 aa10.94□□□□□ -0.66
SMC4-216ENST00000485645 GAGE12HA6NDE8 117 aa10.94□□□□□ -0.66
SMC4-216ENST00000485645 RAB14P61106 215 aa10.94□□□□□ -0.66
SMC4-216ENST00000485645 AMMECR1LQ6DCA0 310 aa10.94□□□□□ -0.66
SMC4-216ENST00000485645 CFAP161Q6P656 301 aa10.94□□□□□ -0.66
SMC4-216ENST00000485645 V9GYV3 84 aa10.94□□□□□ -0.66
SMC4-216ENST00000485645 HIGD1CA8MV81 97 aa10.93□□□□□ -0.66
SMC4-216ENST00000485645 NCR2O95944 276 aa10.93□□□□□ -0.66
SMC4-216ENST00000485645 ADIRFQ15847 76 aa10.93□□□□□ -0.66
SMC4-216ENST00000485645 BORCS7Q96B45 105 aa10.93□□□□□ -0.66
SMC4-216ENST00000485645 RPL39LQ96EH5 51 aaKnown RBP10.93□□□□□ -0.66
SMC4-216ENST00000485645 RNF185Q96GF1 192 aa10.93□□□□□ -0.66
SMC4-216ENST00000485645 C15orf56Q8N910 161 aa10.92□□□□□ -0.66
SMC4-216ENST00000485645 A0A087WYN8 130 aa10.91□□□□□ -0.66
SMC4-216ENST00000485645 A0A1B0GUT8 65 aa10.91□□□□□ -0.66
SMC4-216ENST00000485645 H7C423 109 aa10.91□□□□□ -0.66
SMC4-216ENST00000485645 APCSP02743 223 aa10.91□□□□□ -0.66
SMC4-216ENST00000485645 CHTF8P0CG12 524 aa10.91□□□□□ -0.66
SMC4-216ENST00000485645 RNASEKQ6P5S7 137 aaKnown RBP10.91□□□□□ -0.66
SMC4-216ENST00000485645 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.9□□□□□ -0.66
SMC4-216ENST00000485645 IGKV2-29A2NJV5 120 aaPredicted RBP10.9□□□□□ -0.66
SMC4-216ENST00000485645 SDHAF1A6NFY7 115 aa10.9□□□□□ -0.66
SMC4-216ENST00000485645 SPACA4Q8TDM5 124 aa10.9□□□□□ -0.66
SMC4-216ENST00000485645 CHCHD10Q8WYQ3 142 aaPredicted RBP10.9□□□□□ -0.66
SMC4-216ENST00000485645 FGF6P10767 208 aa10.89□□□□□ -0.67
SMC4-216ENST00000485645 RPS10P46783 165 aaKnown RBP10.89□□□□□ -0.67
SMC4-216ENST00000485645 PMCHP20382 165 aa10.88□□□□□ -0.67
SMC4-216ENST00000485645 HIGD2BQ4VC39 106 aa10.88□□□□□ -0.67
SMC4-216ENST00000485645 CLLU1Q5K131 121 aa10.88□□□□□ -0.67
SMC4-216ENST00000485645 Q6ZRU5 148 aa10.88□□□□□ -0.67
SMC4-216ENST00000485645 NUP35Q8NFH5 326 aa10.88□□□□□ -0.67
SMC4-216ENST00000485645 TMEM191AQ9H0A3 160 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms