RNA–Protein interactions for RNA: ENST00000477554.5

PTPN7-209, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS ALT2 TSL 2

Gene PTPN7, Length 1,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-209ENST00000477554 GAGE13Q4V321 117 aa11.95□□□□□ -0.5
PTPN7-209ENST00000477554 TTC32Q5I0X7 151 aa11.95□□□□□ -0.5
PTPN7-209ENST00000477554 NRACQ8N912 160 aa11.95□□□□□ -0.5
PTPN7-209ENST00000477554 RPL36ALQ969Q0 106 aaKnown RBP11.95□□□□□ -0.5
PTPN7-209ENST00000477554 APOBP04114 4563 aaKnown RBP11.95□□□□□ -0.5
PTPN7-209ENST00000477554 TRBV7-3A0A075B6L6 115 aa11.94□□□□□ -0.5
PTPN7-209ENST00000477554 TRBV6-5A0A0K0K1A5 114 aa11.94□□□□□ -0.5
PTPN7-209ENST00000477554 GAS8-AS1O95177 125 aa11.94□□□□□ -0.5
PTPN7-209ENST00000477554 NEXN-AS1Q8NBZ9 246 aa11.94□□□□□ -0.5
PTPN7-209ENST00000477554 RPL39LQ96EH5 51 aaKnown RBP11.94□□□□□ -0.5
PTPN7-209ENST00000477554 C20orf78Q9BR46 151 aa11.94□□□□□ -0.5
PTPN7-209ENST00000477554 KRTAP17-1Q9BYP8 105 aa11.94□□□□□ -0.5
PTPN7-209ENST00000477554 C1orf196B1AJZ1 125 aa11.94□□□□□ -0.5
PTPN7-209ENST00000477554 NPYP01303 97 aa11.94□□□□□ -0.5
PTPN7-209ENST00000477554 KRTAP10-2P60368 255 aa11.94□□□□□ -0.5
PTPN7-209ENST00000477554 ST20Q9HBF5 79 aa11.94□□□□□ -0.5
PTPN7-209ENST00000477554 SUMO2P61956 95 aaKnown RBP11.92□□□□□ -0.5
PTPN7-209ENST00000477554 MAP1LC3AQ9H492 121 aa11.92□□□□□ -0.5
PTPN7-209ENST00000477554 PRSS47A8MTI9 375 aa11.91□□□□□ -0.5
PTPN7-209ENST00000477554 DNAH10OSP0CZ25 163 aa11.91□□□□□ -0.5
PTPN7-209ENST00000477554 RPL32P62910 135 aaKnown RBP11.91□□□□□ -0.5
PTPN7-209ENST00000477554 SH2D6Q7Z4S9 175 aa11.91□□□□□ -0.5
PTPN7-209ENST00000477554 SDHAF1A6NFY7 115 aa11.9□□□□□ -0.5
PTPN7-209ENST00000477554 ATP6V0E2Q8NHE4 81 aa11.9□□□□□ -0.5
PTPN7-209ENST00000477554 TMEM70Q9BUB7 260 aa11.9□□□□□ -0.5
PTPN7-209ENST00000477554 IGHV3-30P01768 117 aa11.89□□□□□ -0.51
PTPN7-209ENST00000477554 IGHV3-33P01772 117 aa11.89□□□□□ -0.51
PTPN7-209ENST00000477554 IGHV3-30-3P0DP02 117 aa11.89□□□□□ -0.51
PTPN7-209ENST00000477554 IGHV3-30-5P0DP03 117 aa11.89□□□□□ -0.51
PTPN7-209ENST00000477554 POLR2KP53803 58 aaKnown RBP11.89□□□□□ -0.51
PTPN7-209ENST00000477554 UBE2D3P61077 147 aa11.89□□□□□ -0.51
PTPN7-209ENST00000477554 UBE2D2P62837 147 aa11.89□□□□□ -0.51
PTPN7-209ENST00000477554 SPATA12Q7Z6I5 190 aa11.89□□□□□ -0.51
PTPN7-209ENST00000477554 DAZ4Q86SG3 579 aaKnown RBP11.89□□□□□ -0.51
PTPN7-209ENST00000477554 C18orf32Q8TCD1 76 aa11.89□□□□□ -0.51
PTPN7-209ENST00000477554 DAZ3Q9NR90 486 aaKnown RBP11.89□□□□□ -0.51
PTPN7-209ENST00000477554 VCYO14598 125 aa11.88□□□□□ -0.51
PTPN7-209ENST00000477554 PMCHP20382 165 aa11.88□□□□□ -0.51
PTPN7-209ENST00000477554 TIRAPP58753 221 aa11.88□□□□□ -0.51
PTPN7-209ENST00000477554 RAB5BP61020 215 aa11.88□□□□□ -0.51
PTPN7-209ENST00000477554 SMIM2Q9BVW6 85 aa11.88□□□□□ -0.51
PTPN7-209ENST00000477554 GTSF1LQ9H1H1 148 aa11.88□□□□□ -0.51
PTPN7-209ENST00000477554 NXT2Q9NPJ8 142 aaKnown RBP11.88□□□□□ -0.51
PTPN7-209ENST00000477554 PCLOQ9Y6V0 5065 aa11.88□□□□□ -0.51
PTPN7-209ENST00000477554 IGHV3-38A0A0C4DH36 116 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 TRBV27A0A0K0K1C4 114 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 LOC389332A0A1B0GUA5 103 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 I3L3M4 83 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 HIST1H2BKO60814 126 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 HIST1H2BJP06899 126 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 HIST1H2BOP23527 126 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 HIST1H2BBP33778 126 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 HIST1H2BDP58876 126 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 HIST1H2BCP62807 126 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 Q0VG73 95 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 HIST2H2BEQ16778 126 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.87□□□□□ -0.51
PTPN7-209ENST00000477554 PRSS3P2Q8NHM4 247 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 HIST1H2BHQ93079 126 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 HIST1H2BNQ99877 126 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 HIST1H2BMQ99879 126 aa11.87□□□□□ -0.51
PTPN7-209ENST00000477554 LELP1Q5T871 98 aa11.86□□□□□ -0.51
PTPN7-209ENST00000477554 Q8N8P6 123 aa11.86□□□□□ -0.51
PTPN7-209ENST00000477554 KIR2DL4Q99706 377 aa11.86□□□□□ -0.51
PTPN7-209ENST00000477554 C16orf90A8MZG2 172 aa11.86□□□□□ -0.51
PTPN7-209ENST00000477554 TCAPO15273 167 aa11.86□□□□□ -0.51
PTPN7-209ENST00000477554 IQCJQ1A5X6 159 aa11.86□□□□□ -0.51
PTPN7-209ENST00000477554 K7EMI3 77 aa11.85□□□□□ -0.51
PTPN7-209ENST00000477554 IFI27P40305 119 aaPredicted RBP11.85□□□□□ -0.51
PTPN7-209ENST00000477554 TMEM97Q5BJF2 176 aa11.85□□□□□ -0.51
PTPN7-209ENST00000477554 LINC01556Q5JQF7 62 aa11.85□□□□□ -0.51
PTPN7-209ENST00000477554 COTL1Q14019 142 aa11.84□□□□□ -0.51
PTPN7-209ENST00000477554 FA2HQ7L5A8 372 aa11.84□□□□□ -0.51
PTPN7-209ENST00000477554 BAGE3Q86Y29 109 aa11.84□□□□□ -0.51
PTPN7-209ENST00000477554 LINC00614P0C842 121 aa11.83□□□□□ -0.52
PTPN7-209ENST00000477554 BTF3P20290 206 aaKnown RBP11.83□□□□□ -0.52
PTPN7-209ENST00000477554 FCER1GP30273 86 aa11.83□□□□□ -0.52
PTPN7-209ENST00000477554 Q9HAA7 133 aa11.83□□□□□ -0.52
PTPN7-209ENST00000477554 ABCA13Q86UQ4 5058 aa11.83□□□□□ -0.52
PTPN7-209ENST00000477554 TRAV8-6A0A0B4J262 113 aa11.82□□□□□ -0.52
PTPN7-209ENST00000477554 NIT1Q86X76 327 aa11.82□□□□□ -0.52
PTPN7-209ENST00000477554 LINC01546A6NGU7 62 aa11.81□□□□□ -0.52
PTPN7-209ENST00000477554 CHCHD1Q96BP2 118 aaKnown RBP11.81□□□□□ -0.52
PTPN7-209ENST00000477554 KRTAP4-5Q9BYR2 181 aa11.81□□□□□ -0.52
PTPN7-209ENST00000477554 AP5S1Q9NUS5 200 aa11.81□□□□□ -0.52
PTPN7-209ENST00000477554 TRAV9-2A0A087WT02 112 aa11.8□□□□□ -0.52
PTPN7-209ENST00000477554 A0A087WTM6 91 aa11.8□□□□□ -0.52
PTPN7-209ENST00000477554 IBA57-AS1B1ANH7 110 aa11.8□□□□□ -0.52
PTPN7-209ENST00000477554 TSHBP01222 138 aa11.8□□□□□ -0.52
PTPN7-209ENST00000477554 LAGE3Q14657 143 aa11.8□□□□□ -0.52
PTPN7-209ENST00000477554 ORMDL2Q53FV1 153 aa11.8□□□□□ -0.52
PTPN7-209ENST00000477554 RNASEKQ6P5S7 137 aaKnown RBP11.79□□□□□ -0.52
PTPN7-209ENST00000477554 TRBV25-1A0A075B6N4 114 aa11.78□□□□□ -0.52
PTPN7-209ENST00000477554 TRBV6-8A0A0A6YYG3 113 aa11.78□□□□□ -0.52
PTPN7-209ENST00000477554 IGHV1-24A0A0C4DH33 117 aa11.78□□□□□ -0.52
PTPN7-209ENST00000477554 G0S2P27469 103 aa11.78□□□□□ -0.52
PTPN7-209ENST00000477554 NDUFA6P56556 154 aa11.78□□□□□ -0.52
PTPN7-209ENST00000477554 LRCOL1A6NCL2 159 aa11.77□□□□□ -0.52
PTPN7-209ENST00000477554 S100A6P06703 90 aa11.77□□□□□ -0.52
PTPN7-209ENST00000477554 AMTP48728 403 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms