RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 PSCAO43653 123 aa5.3□□□□□ -1.56
SYNE1-216ENST00000461872 GNRH2O43555 120 aa5.3□□□□□ -1.56
SYNE1-216ENST00000461872 IBA57-AS1B1ANH7 110 aa5.3□□□□□ -1.56
SYNE1-216ENST00000461872 SYNJ2BPP57105 145 aa5.3□□□□□ -1.56
SYNE1-216ENST00000461872 LMO4P61968 165 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 LY6DQ14210 128 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 Q8NA96 180 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 DEFB131AP59861 70 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 CLPSL1A2RUU4 121 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 PKIGQ9Y2B9 76 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 SPTBN4Q9H254 2564 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 TRANK1O15050 2925 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 IGLV4-3A0A075B6K6 122 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 A0A0U1RRA0 63 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 TMEM256-PLSCR3K7ERE1 68 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 IGLV1-40P01703 118 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 SBSPONQ8IVN8 264 aa5.29□□□□□ -1.56
SYNE1-216ENST00000461872 TMEM263Q8WUH6 116 aaKnown RBP5.29□□□□□ -1.56
SYNE1-216ENST00000461872 IGHV3OR16-10A0A075B7F0 116 aa5.28□□□□□ -1.56
SYNE1-216ENST00000461872 B5MCH6 92 aa5.28□□□□□ -1.56
SYNE1-216ENST00000461872 KLHL30-AS1Q8NEE0 82 aa5.28□□□□□ -1.56
SYNE1-216ENST00000461872 COX7B2Q8TF08 81 aa5.28□□□□□ -1.56
SYNE1-216ENST00000461872 C4orf3Q8WVX3 66 aa5.28□□□□□ -1.56
SYNE1-216ENST00000461872 IGHV3-64A0A075B6Q5 118 aa5.28□□□□□ -1.56
SYNE1-216ENST00000461872 RNASE3P12724 160 aaKnown RBP5.28□□□□□ -1.56
SYNE1-216ENST00000461872 PRR31Q5SQ13 230 aa5.28□□□□□ -1.56
SYNE1-216ENST00000461872 MAPKAPK5-AS1Q8N8E1 139 aa5.28□□□□□ -1.56
SYNE1-216ENST00000461872 SETD2Q9BYW2 2564 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-216ENST00000461872 NDUFC2-KCTD14E9PQ53 114 aa5.28□□□□□ -1.56
SYNE1-216ENST00000461872 NDUFC1O43677 76 aa5.27□□□□□ -1.57
SYNE1-216ENST00000461872 TRAV13-1A0A0B4J241 112 aa5.27□□□□□ -1.57
SYNE1-216ENST00000461872 AMELXQ99217 191 aa5.27□□□□□ -1.57
SYNE1-216ENST00000461872 NDUFC2O95298 119 aa5.27□□□□□ -1.57
SYNE1-216ENST00000461872 ZFP36P26651 326 aaKnown RBP5.27□□□□□ -1.57
SYNE1-216ENST00000461872 BRD3OSQ6XYD6 125 aa5.27□□□□□ -1.57
SYNE1-216ENST00000461872 SND1-IT1Q9HBX3 110 aa5.27□□□□□ -1.57
SYNE1-216ENST00000461872 FAM236AA0A1B0GUQ0 79 aa5.27□□□□□ -1.57
SYNE1-216ENST00000461872 FAM236BA0A1B0GV22 79 aa5.27□□□□□ -1.57
SYNE1-216ENST00000461872 MT-ATP8P03928 68 aa5.27□□□□□ -1.57
SYNE1-216ENST00000461872 TTTY13Q9BZ97 58 aa5.27□□□□□ -1.57
SYNE1-216ENST00000461872 ANKRD17O75179 2603 aaKnown RBP5.27□□□□□ -1.57
SYNE1-216ENST00000461872 F8W735 103 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-216ENST00000461872 RPL39P62891 51 aaKnown RBP5.27□□□□□ -1.57
SYNE1-216ENST00000461872 TRBV7-7A0A0K0K1E9 115 aa5.27□□□□□ -1.57
SYNE1-216ENST00000461872 OPRPNQ99935 248 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-216ENST00000461872 FAM110AQ9BQ89 295 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 COX17Q14061 63 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 LINC00308Q8TCZ7 52 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 ZNRF2Q8NHG8 242 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 TRIAP1O43715 76 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 TSHBP01222 138 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 RBMY1FQ15415 496 aaKnown RBP5.26□□□□□ -1.57
SYNE1-216ENST00000461872 LINC01561Q8N1V8 128 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 C3orf22Q8N5N4 141 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 ABCA12Q86UK0 2595 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 IGLV4-69A0A075B6H9 119 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 SMIM9A6NGZ8 99 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 ADORA2A-AS1P86434 159 aa5.26□□□□□ -1.57
SYNE1-216ENST00000461872 PRB3Q04118 309 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-216ENST00000461872 LINC01600Q96MT4 127 aa5.25□□□□□ -1.57
SYNE1-216ENST00000461872 PRO0461Q9UI25 63 aa5.25□□□□□ -1.57
SYNE1-216ENST00000461872 NDUFA7O95182 113 aa5.25□□□□□ -1.57
SYNE1-216ENST00000461872 LRRC75A-AS1Q8N1F1 130 aa5.25□□□□□ -1.57
SYNE1-216ENST00000461872 ZNF625Q96I27 306 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-216ENST00000461872 DSCR8Q96T75 97 aa5.25□□□□□ -1.57
SYNE1-216ENST00000461872 FAM19A4Q96LR4 140 aa5.25□□□□□ -1.57
SYNE1-216ENST00000461872 XGP55808 180 aa5.25□□□□□ -1.57
SYNE1-216ENST00000461872 C11orf21Q9P2W6 132 aa5.25□□□□□ -1.57
SYNE1-216ENST00000461872 BPTFQ12830 3046 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 MUC4Q99102 2169 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 TRBV6-4A0A1B0GX49 114 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 BCE1O60756 84 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 PSMB8P28062 276 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 DCANP1Q8TF63 244 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 COL27A1Q8IZC6 1860 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-216ENST00000461872 F8P00451 2351 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 RS1O15537 224 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 CRYGDP07320 174 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 NPC2P61916 151 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 UNQ9165/PRO28630Q6UXU0 137 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 LINC00527Q9UJ94 153 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 TEX49A0A1B0GTD5 131 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 INSL3P51460 131 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 APOC4P55056 127 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 CHD8Q9HCK8 2581 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 LY6HO94772 140 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 RUSC1-AS1Q66K80 236 aa5.24□□□□□ -1.57
SYNE1-216ENST00000461872 Q6JHZ5 121 aa5.23□□□□□ -1.57
SYNE1-216ENST00000461872 TRBV10-3A0A0K0K1G6 114 aa5.23□□□□□ -1.57
SYNE1-216ENST00000461872 SERP2Q8N6R1 65 aa5.23□□□□□ -1.57
SYNE1-216ENST00000461872 IGLV5-45A0A087WSX0 123 aa5.23□□□□□ -1.57
SYNE1-216ENST00000461872 LINC00526Q96FQ7 95 aa5.23□□□□□ -1.57
SYNE1-216ENST00000461872 F6UB75 175 aa5.23□□□□□ -1.57
SYNE1-216ENST00000461872 RPL28P46779 137 aaKnown RBP5.23□□□□□ -1.57
SYNE1-216ENST00000461872 DEFB121Q5J5C9 76 aa5.23□□□□□ -1.57
SYNE1-216ENST00000461872 BEAN1Q3B7T3 259 aa5.22□□□□□ -1.57
SYNE1-216ENST00000461872 KIF25-AS1Q9Y6Z4 181 aa5.22□□□□□ -1.57
SYNE1-216ENST00000461872 TRAV12-2A0A075B6T6 113 aa5.22□□□□□ -1.57
SYNE1-216ENST00000461872 COX7CP15954 63 aa5.22□□□□□ -1.57
SYNE1-216ENST00000461872 CFHR3Q02985 330 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms