RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 TMEM262E9PQX1 116 aa8.54□□□□□ -1.04
HDAC4-207ENST00000461113 DNAH10OSP0CZ25 163 aa8.54□□□□□ -1.04
HDAC4-207ENST00000461113 BTF3P20290 206 aaKnown RBP8.54□□□□□ -1.04
HDAC4-207ENST00000461113 PMCHP20382 165 aa8.54□□□□□ -1.04
HDAC4-207ENST00000461113 CKS2P33552 79 aa8.54□□□□□ -1.04
HDAC4-207ENST00000461113 COTL1Q14019 142 aa8.54□□□□□ -1.04
HDAC4-207ENST00000461113 SPATA12Q7Z6I5 190 aa8.54□□□□□ -1.04
HDAC4-207ENST00000461113 CHCHD5Q9BSY4 110 aa8.54□□□□□ -1.04
HDAC4-207ENST00000461113 IGHV1-24A0A0C4DH33 117 aa8.53□□□□□ -1.04
HDAC4-207ENST00000461113 A0A1B0GXF2 115 aa8.53□□□□□ -1.04
HDAC4-207ENST00000461113 PPBPP02775 128 aa8.53□□□□□ -1.04
HDAC4-207ENST00000461113 ELOBQ15370 118 aa8.53□□□□□ -1.04
HDAC4-207ENST00000461113 LINC01556Q5JQF7 62 aa8.53□□□□□ -1.04
HDAC4-207ENST00000461113 RNF185Q96GF1 192 aa8.53□□□□□ -1.04
HDAC4-207ENST00000461113 UBE2L6O14933 153 aa8.52□□□□□ -1.05
HDAC4-207ENST00000461113 COX19Q49B96 90 aa8.52□□□□□ -1.05
HDAC4-207ENST00000461113 NFE4Q86UQ8 179 aa8.52□□□□□ -1.05
HDAC4-207ENST00000461113 C6orf223Q8N319 242 aa8.52□□□□□ -1.05
HDAC4-207ENST00000461113 RPL39LQ96EH5 51 aaKnown RBP8.52□□□□□ -1.05
HDAC4-207ENST00000461113 CHCHD7Q9BUK0 85 aa8.52□□□□□ -1.05
HDAC4-207ENST00000461113 TRBV6-5A0A0K0K1A5 114 aa8.51□□□□□ -1.05
HDAC4-207ENST00000461113 SDHAF1A6NFY7 115 aa8.51□□□□□ -1.05
HDAC4-207ENST00000461113 I3L3M4 83 aa8.51□□□□□ -1.05
HDAC4-207ENST00000461113 NCR2O95944 276 aa8.51□□□□□ -1.05
HDAC4-207ENST00000461113 IGHV3-30P01768 117 aa8.51□□□□□ -1.05
HDAC4-207ENST00000461113 IGHV3-33P01772 117 aa8.51□□□□□ -1.05
HDAC4-207ENST00000461113 IGHV3-30-3P0DP02 117 aa8.51□□□□□ -1.05
HDAC4-207ENST00000461113 IGHV3-30-5P0DP03 117 aa8.51□□□□□ -1.05
HDAC4-207ENST00000461113 AMTP48728 403 aa8.51□□□□□ -1.05
HDAC4-207ENST00000461113 MRPL51Q4U2R6 128 aaKnown RBP8.51□□□□□ -1.05
HDAC4-207ENST00000461113 TMEM243Q9BU79 118 aa8.51□□□□□ -1.05
HDAC4-207ENST00000461113 VCYO14598 125 aa8.5□□□□□ -1.05
HDAC4-207ENST00000461113 SLC7A5P1Q8MH63 180 aa8.5□□□□□ -1.05
HDAC4-207ENST00000461113 ORMDL3Q8N138 153 aa8.5□□□□□ -1.05
HDAC4-207ENST00000461113 SMKR1H3BMG3 65 aa8.49□□□□□ -1.05
HDAC4-207ENST00000461113 TCAPO15273 167 aa8.49□□□□□ -1.05
HDAC4-207ENST00000461113 APCSP02743 223 aa8.49□□□□□ -1.05
HDAC4-207ENST00000461113 FCER1GP30273 86 aa8.49□□□□□ -1.05
HDAC4-207ENST00000461113 SUMO2P61956 95 aaKnown RBP8.49□□□□□ -1.05
HDAC4-207ENST00000461113 IQCJQ1A5X6 159 aa8.49□□□□□ -1.05
HDAC4-207ENST00000461113 TMEM136Q6ZRR5 245 aa8.49□□□□□ -1.05
HDAC4-207ENST00000461113 NIT1Q86X76 327 aa8.49□□□□□ -1.05
HDAC4-207ENST00000461113 KIR2DL4Q99706 377 aa8.49□□□□□ -1.05
HDAC4-207ENST00000461113 C20orf78Q9BR46 151 aa8.49□□□□□ -1.05
HDAC4-207ENST00000461113 D6R8Y8 96 aa8.48□□□□□ -1.05
HDAC4-207ENST00000461113 PHOX2AO14813 284 aa8.48□□□□□ -1.05
HDAC4-207ENST00000461113 SMAGPQ0VAQ4 97 aa8.48□□□□□ -1.05
HDAC4-207ENST00000461113 Q5VSD8 79 aa8.48□□□□□ -1.05
HDAC4-207ENST00000461113 TMEM70Q9BUB7 260 aa8.48□□□□□ -1.05
HDAC4-207ENST00000461113 LAMTOR2Q9Y2Q5 125 aa8.48□□□□□ -1.05
HDAC4-207ENST00000461113 VPS13BQ7Z7G8 4022 aa8.48□□□□□ -1.05
HDAC4-207ENST00000461113 FAT1Q14517 4588 aa8.47□□□□□ -1.05
HDAC4-207ENST00000461113 TRAV8-3A0A0A6YYJ7 113 aa8.47□□□□□ -1.05
HDAC4-207ENST00000461113 J3QL48 77 aa8.47□□□□□ -1.05
HDAC4-207ENST00000461113 TNFRSF6BO95407 300 aa8.47□□□□□ -1.05
HDAC4-207ENST00000461113 HLA-DQA1P01909 254 aa8.47□□□□□ -1.05
HDAC4-207ENST00000461113 RPS10P46783 165 aaKnown RBP8.47□□□□□ -1.05
HDAC4-207ENST00000461113 KRTAP10-2P60368 255 aa8.47□□□□□ -1.05
HDAC4-207ENST00000461113 GAGE6Q13070 117 aa8.47□□□□□ -1.05
HDAC4-207ENST00000461113 LAGE3Q14657 143 aa8.47□□□□□ -1.05
HDAC4-207ENST00000461113 AMMECR1LQ6DCA0 310 aa8.47□□□□□ -1.05
HDAC4-207ENST00000461113 RMI2Q96E14 147 aa8.47□□□□□ -1.05
HDAC4-207ENST00000461113 PRELID3AQ96N28 172 aa8.47□□□□□ -1.05
HDAC4-207ENST00000461113 FLG2Q5D862 2391 aaPredicted RBP8.47□□□□□ -1.05
HDAC4-207ENST00000461113 TRBV24-1A0A075B6N3 115 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 TRBV27A0A0K0K1C4 114 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 IBA57-AS1B1ANH7 110 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 PSCAO43653 123 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 CRPP02741 224 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 MT-ND6P03923 174 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 POLR2KP53803 58 aaKnown RBP8.46□□□□□ -1.06
HDAC4-207ENST00000461113 Q0VG73 95 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 NTM-AS1Q6ZSK4 140 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 NRACQ8N912 160 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 TMEM18Q96B42 140 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 TM2D2Q9BX73 214 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 GNB1LQ9BYB4 327 aa8.46□□□□□ -1.06
HDAC4-207ENST00000461113 HMCN2Q8NDA2 5059 aa8.45□□□□□ -1.06
HDAC4-207ENST00000461113 H7C423 109 aa8.45□□□□□ -1.06
HDAC4-207ENST00000461113 EREGO14944 169 aa8.45□□□□□ -1.06
HDAC4-207ENST00000461113 GAS8-AS1O95177 125 aa8.45□□□□□ -1.06
HDAC4-207ENST00000461113 ANGP03950 147 aaKnown RBP8.45□□□□□ -1.06
HDAC4-207ENST00000461113 RAB5AP20339 215 aa8.45□□□□□ -1.06
HDAC4-207ENST00000461113 ATRAIDQ6UW56 229 aa8.45□□□□□ -1.06
HDAC4-207ENST00000461113 DEFB104AQ8WTQ1 72 aa8.45□□□□□ -1.06
HDAC4-207ENST00000461113 MAP1LC3AQ9H492 121 aa8.45□□□□□ -1.06
HDAC4-207ENST00000461113 Q9HAA7 133 aa8.45□□□□□ -1.06
HDAC4-207ENST00000461113 KLK12Q9UKR0 248 aa8.45□□□□□ -1.06
HDAC4-207ENST00000461113 COX11Q9Y6N1 276 aa8.45□□□□□ -1.06
HDAC4-207ENST00000461113 RPL32P62910 135 aaKnown RBP8.44□□□□□ -1.06
HDAC4-207ENST00000461113 RNASEKQ6P5S7 137 aaKnown RBP8.44□□□□□ -1.06
HDAC4-207ENST00000461113 TMEM101Q96IK0 257 aa8.44□□□□□ -1.06
HDAC4-207ENST00000461113 KRTAP1-5Q9BYS1 174 aa8.44□□□□□ -1.06
HDAC4-207ENST00000461113 SMCO4Q9NRQ5 59 aa8.44□□□□□ -1.06
HDAC4-207ENST00000461113 NPYP01303 97 aa8.43□□□□□ -1.06
HDAC4-207ENST00000461113 RBX1P62877 108 aa8.43□□□□□ -1.06
HDAC4-207ENST00000461113 FABP9Q0Z7S8 132 aa8.43□□□□□ -1.06
HDAC4-207ENST00000461113 MPV17L2Q567V2 206 aa8.43□□□□□ -1.06
HDAC4-207ENST00000461113 UBE2WQ96B02 151 aa8.43□□□□□ -1.06
HDAC4-207ENST00000461113 SMIM2Q9BVW6 85 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms