RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 HIVEP3Q5T1R4 2406 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 PLXNA2O75051 1894 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 IGKV1D-17A0A075B6S4 117 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 IGHV3-72A0A0B4J1Y9 119 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 IGKV1-6A0A0C4DH72 117 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 A0A1B0GWA3 101 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 NTN3O00634 580 aaPredicted RBP3.8□□□□□ -1.8
VPS41-209ENST00000457055 SLC25A20O43772 301 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 LY6G6DO95868 133 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 NPPCP23582 126 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 FXYD7P58549 80 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 PRR4Q16378 134 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 IL17AQ16552 155 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 FAM53AQ6NSI3 398 aaPredicted RBP3.8□□□□□ -1.8
VPS41-209ENST00000457055 LINC00269Q8N2A0 174 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 RPRMLQ8N4K4 120 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 Q96M85 177 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 OCR1Q9BZK8 76 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 RP1P56715 2156 aa3.8□□□□□ -1.8
VPS41-209ENST00000457055 RP1L1Q8IWN7 2480 aaPredicted RBP3.8□□□□□ -1.8
VPS41-209ENST00000457055 DSCAML1Q8TD84 2053 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 IGHV1OR15-9A0A0B4J2B8 117 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 MYMXA0A1B0GTQ4 84 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 H7BZZ5 65 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 XCL1P47992 114 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 TSPEAR-AS2P59090 65 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 UBE2D3P61077 147 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 UBE2D2P62837 147 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 Q0VFX4 171 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 KLKP1Q107X0 134 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 NCBP2-AS2Q69YL0 99 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 IFI27L1Q96BM0 104 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 TMEM141Q96I45 108 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 B9D2Q9BPU9 175 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 SMIM7Q9BQ49 75 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 TTTY13Q9BZ97 58 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 FGF23Q9GZV9 251 aaPredicted RBP3.79□□□□□ -1.8
VPS41-209ENST00000457055 ZNF71Q9NQZ8 489 aaPredicted RBP3.79□□□□□ -1.8
VPS41-209ENST00000457055 CMC2Q9NRP2 79 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 CCL26Q9Y258 94 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 PHLDA3Q9Y5J5 127 aa3.79□□□□□ -1.8
VPS41-209ENST00000457055 MDC1Q14676 2089 aaKnown RBP3.79□□□□□ -1.8
VPS41-209ENST00000457055 SHANK1Q9Y566 2161 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 IGLV3-9A0A075B6K5 115 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 IGHV4OR15-8A0A075B7B6 117 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 A0A0B4J2C4 111 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 IGHV3-16A0A0C4DH30 117 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 IGHV5-51A0A0C4DH38 117 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 A6NIN4 97 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 RPL37AP8A6NKH3 93 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 H3BVH4 76 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 IGHV3-11P01762 117 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 LMO2P25791 158 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 FXYD2P54710 66 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 EGFEM1PQ0D2K5 195 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 LYPD5Q6UWN5 251 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 PRAC1Q96KF2 57 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 CAMK2N2Q96S95 79 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 TIMM21Q9BVV7 248 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 NDUFA12Q9UI09 145 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 CSMD2Q7Z408 3487 aa3.78□□□□□ -1.8
VPS41-209ENST00000457055 DIDO1Q9BTC0 2240 aaKnown RBP3.78□□□□□ -1.8
VPS41-209ENST00000457055 ABCA2Q9BZC7 2435 aa3.78□□□□□ -1.81
VPS41-209ENST00000457055 NINQ8N4C6 2090 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 NBEAL1Q6ZS30 2694 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 IGKV3D-20A0A0C4DH25 116 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 LOC107984156A0A0G2JMH3 177 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 A0A1B0GUV1 79 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 KRTAP10-5P60370 271 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 CASC10Q5T4H9 136 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 SDIM1Q6ZPB5 146 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 ARL17AQ8IVW1 177 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 SMIM14Q96QK8 99 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 RETNLBQ9BQ08 111 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 PLA2G12AQ9BZM1 189 aa3.77□□□□□ -1.81
VPS41-209ENST00000457055 FN1P02751 2386 aaKnown RBP3.77□□□□□ -1.81
VPS41-209ENST00000457055 COL27A1Q8IZC6 1860 aaPredicted RBP3.77□□□□□ -1.81
VPS41-209ENST00000457055 IGHV4-30-2A0A087WSY4 118 aa3.76□□□□□ -1.81
VPS41-209ENST00000457055 IGHV3-43A0A0B4J1X8 118 aa3.76□□□□□ -1.81
VPS41-209ENST00000457055 K7ERS5 55 aa3.76□□□□□ -1.81
VPS41-209ENST00000457055 Q6ZRP5 223 aa3.76□□□□□ -1.81
VPS41-209ENST00000457055 FAM223AQ8IWN6 122 aa3.76□□□□□ -1.81
VPS41-209ENST00000457055 Q8N7P7 452 aa3.76□□□□□ -1.81
VPS41-209ENST00000457055 PFN4Q8NHR9 129 aa3.76□□□□□ -1.81
VPS41-209ENST00000457055 LINC00467Q9BRT7 94 aa3.76□□□□□ -1.81
VPS41-209ENST00000457055 CYP4F30PQ9H0H9 118 aa3.76□□□□□ -1.81
VPS41-209ENST00000457055 SMAD5-AS1Q9Y6J3 95 aa3.76□□□□□ -1.81
VPS41-209ENST00000457055 CCDC168Q8NDH2 2452 aa3.76□□□□□ -1.81
VPS41-209ENST00000457055 PIKFYVEQ9Y2I7 2098 aa3.75□□□□□ -1.81
VPS41-209ENST00000457055 A0A087WW49 117 aa3.75□□□□□ -1.81
VPS41-209ENST00000457055 A0A1W2PNU3 283 aaPredicted RBP3.75□□□□□ -1.81
VPS41-209ENST00000457055 C19orf71A6NCJ1 209 aa3.75□□□□□ -1.81
VPS41-209ENST00000457055 IQCF6A8MYZ5 107 aa3.75□□□□□ -1.81
VPS41-209ENST00000457055 SRRM5B3KS81 715 aa3.75□□□□□ -1.81
VPS41-209ENST00000457055 GNRH2O43555 120 aa3.75□□□□□ -1.81
VPS41-209ENST00000457055 LEPROTL1O95214 131 aa3.75□□□□□ -1.81
VPS41-209ENST00000457055 HMGN2P05204 90 aaKnown RBP3.75□□□□□ -1.81
VPS41-209ENST00000457055 SYCNQ0VAF6 134 aa3.75□□□□□ -1.81
VPS41-209ENST00000457055 VMO1Q7Z5L0 202 aa3.75□□□□□ -1.81
VPS41-209ENST00000457055 ZFAND2AQ8N6M9 145 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 228.2 ms