RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 IGKV1OR2-108A0A075B7D4 117 aa7.37□□□□□ -1.23
USP54-205ENST00000424265 TRAV26-2A0A0B4J265 109 aa7.37□□□□□ -1.23
USP54-205ENST00000424265 C11orf44Q8N8P7 122 aa7.37□□□□□ -1.23
USP54-205ENST00000424265 IGHV3-66A0A0C4DH42 116 aa7.36□□□□□ -1.23
USP54-205ENST00000424265 CCL24O00175 119 aa7.36□□□□□ -1.23
USP54-205ENST00000424265 OXTP01178 125 aa7.36□□□□□ -1.23
USP54-205ENST00000424265 C1orf229Q6ZS94 237 aaPredicted RBP7.36□□□□□ -1.23
USP54-205ENST00000424265 ZNF491Q8N8L2 437 aa7.36□□□□□ -1.23
USP54-205ENST00000424265 INAFM1C9JVW0 142 aa7.36□□□□□ -1.23
USP54-205ENST00000424265 RAI1Q7Z5J4 1906 aaPredicted RBP7.36□□□□□ -1.23
USP54-205ENST00000424265 MED13LQ71F56 2210 aa7.36□□□□□ -1.23
USP54-205ENST00000424265 ATP5EP56381 51 aaPredicted RBP7.35□□□□□ -1.23
USP54-205ENST00000424265 LST1O00453 97 aa7.35□□□□□ -1.23
USP54-205ENST00000424265 C5orf38Q86SI9 138 aa7.35□□□□□ -1.23
USP54-205ENST00000424265 NEXN-AS1Q8NBZ9 246 aa7.35□□□□□ -1.23
USP54-205ENST00000424265 C17orf77Q96MU5 243 aa7.35□□□□□ -1.23
USP54-205ENST00000424265 SMIM2Q9BVW6 85 aa7.35□□□□□ -1.23
USP54-205ENST00000424265 HOXD3P31249 432 aaPredicted RBP7.35□□□□□ -1.23
USP54-205ENST00000424265 C9orf66Q5T8R8 295 aa7.35□□□□□ -1.23
USP54-205ENST00000424265 PATE2Q6UY27 113 aa7.35□□□□□ -1.23
USP54-205ENST00000424265 TRAV21A0A0B4J279 112 aa7.35□□□□□ -1.23
USP54-205ENST00000424265 DAZ2Q13117 558 aaKnown RBP7.35□□□□□ -1.23
USP54-205ENST00000424265 DAZ3Q9NR90 486 aaKnown RBP7.35□□□□□ -1.23
USP54-205ENST00000424265 TRAV23DV6A0A075B6W5 121 aa7.34□□□□□ -1.23
USP54-205ENST00000424265 NDPQ00604 133 aa7.34□□□□□ -1.23
USP54-205ENST00000424265 Q6ZS46 218 aa7.34□□□□□ -1.23
USP54-205ENST00000424265 TIMM21Q9BVV7 248 aa7.34□□□□□ -1.23
USP54-205ENST00000424265 IGHV3OR16-8A0A075B7F1 116 aa7.34□□□□□ -1.23
USP54-205ENST00000424265 PPP1R17O96001 155 aa7.34□□□□□ -1.23
USP54-205ENST00000424265 CTSGP08311 255 aa7.34□□□□□ -1.23
USP54-205ENST00000424265 TOMM6Q96B49 74 aa7.34□□□□□ -1.23
USP54-205ENST00000424265 PTPN13Q12923 2485 aa7.34□□□□□ -1.23
USP54-205ENST00000424265 LEPROTO15243 131 aa7.34□□□□□ -1.23
USP54-205ENST00000424265 NOTCH2Q04721 2471 aa7.34□□□□□ -1.24
USP54-205ENST00000424265 SOCS3O14543 225 aa7.34□□□□□ -1.24
USP54-205ENST00000424265 IGKV1-17P01599 117 aa7.34□□□□□ -1.24
USP54-205ENST00000424265 Q6JHZ5 121 aa7.34□□□□□ -1.24
USP54-205ENST00000424265 TRBV6-1A0A0K0K1D8 114 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 AVPP01185 164 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 DEFB121Q5J5C9 76 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 Q6ZSV7 163 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 DAND5Q8N907 189 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 ZNF702PQ9H963 129 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 ZFYVE26Q68DK2 2539 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 F5H697 171 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 CDH23Q9H251 3354 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 XCL1P47992 114 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 LINC00482Q8N8I6 264 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 MSRB1Q9NZV6 116 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 XCL2Q9UBD3 114 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 LAMA2P24043 3122 aaKnown RBP7.33□□□□□ -1.24
USP54-205ENST00000424265 A0A087WVE0 104 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 C16orf95Q9H693 158 aa7.33□□□□□ -1.24
USP54-205ENST00000424265 C11orf86A6NJI1 115 aa7.32□□□□□ -1.24
USP54-205ENST00000424265 FHL2Q14192 279 aa7.32□□□□□ -1.24
USP54-205ENST00000424265 IGKV2-40A0A087WW87 121 aaPredicted RBP7.32□□□□□ -1.24
USP54-205ENST00000424265 IGKV2D-40P01614 121 aaPredicted RBP7.32□□□□□ -1.24
USP54-205ENST00000424265 GP9P14770 177 aa7.32□□□□□ -1.24
USP54-205ENST00000424265 PRUNE2Q8WUY3 3088 aa7.32□□□□□ -1.24
USP54-205ENST00000424265 NAV3Q8IVL0 2385 aa7.32□□□□□ -1.24
USP54-205ENST00000424265 TRBV7-6A0A0J9YX20 115 aa7.32□□□□□ -1.24
USP54-205ENST00000424265 SMCR5Q8TEV8 140 aa7.32□□□□□ -1.24
USP54-205ENST00000424265 TMEM223A0PJW6 202 aa7.31□□□□□ -1.24
USP54-205ENST00000424265 SUMO2P61956 95 aaKnown RBP7.31□□□□□ -1.24
USP54-205ENST00000424265 TMEM141Q96I45 108 aa7.31□□□□□ -1.24
USP54-205ENST00000424265 OVOL2Q9BRP0 275 aa7.31□□□□□ -1.24
USP54-205ENST00000424265 LENEPQ9Y5L5 61 aa7.31□□□□□ -1.24
USP54-205ENST00000424265 I3L3M4 83 aa7.31□□□□□ -1.24
USP54-205ENST00000424265 SS18Q15532 418 aa7.31□□□□□ -1.24
USP54-205ENST00000424265 PHLDA3Q9Y5J5 127 aa7.31□□□□□ -1.24
USP54-205ENST00000424265 LRRK2Q5S007 2527 aa7.31□□□□□ -1.24
USP54-205ENST00000424265 E7EUB6 86 aa7.31□□□□□ -1.24
USP54-205ENST00000424265 EGR2P11161 476 aaPredicted RBP7.31□□□□□ -1.24
USP54-205ENST00000424265 IGLV1-40P01703 118 aa7.3□□□□□ -1.24
USP54-205ENST00000424265 RNF185Q96GF1 192 aa7.3□□□□□ -1.24
USP54-205ENST00000424265 F8WEM9 126 aa7.3□□□□□ -1.24
USP54-205ENST00000424265 FSHBP01225 129 aa7.3□□□□□ -1.24
USP54-205ENST00000424265 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.3□□□□□ -1.24
USP54-205ENST00000424265 SOSTDC1Q6X4U4 206 aa7.3□□□□□ -1.24
USP54-205ENST00000424265 M0R381 172 aa7.29□□□□□ -1.24
USP54-205ENST00000424265 PAX4O43316 350 aa7.29□□□□□ -1.24
USP54-205ENST00000424265 INSP01308 110 aa7.29□□□□□ -1.24
USP54-205ENST00000424265 Q8TAT8 98 aa7.29□□□□□ -1.24
USP54-205ENST00000424265 BUB3O43684 328 aa7.29□□□□□ -1.24
USP54-205ENST00000424265 IGHV4OR15-8A0A075B7B6 117 aa7.29□□□□□ -1.24
USP54-205ENST00000424265 A0A087WW49 117 aa7.29□□□□□ -1.24
USP54-205ENST00000424265 CYSTM1Q9H1C7 97 aa7.29□□□□□ -1.24
USP54-205ENST00000424265 NDUFC1O43677 76 aa7.29□□□□□ -1.24
USP54-205ENST00000424265 SZT2Q5T011 3432 aa7.29□□□□□ -1.24
USP54-205ENST00000424265 PLAC8L1A1L4L8 177 aa7.28□□□□□ -1.24
USP54-205ENST00000424265 FAM19A1Q7Z5A9 133 aa7.28□□□□□ -1.24
USP54-205ENST00000424265 ABCA1O95477 2261 aa7.28□□□□□ -1.24
USP54-205ENST00000424265 LINC01546A6NGU7 62 aa7.28□□□□□ -1.24
USP54-205ENST00000424265 NXPH4O95158 308 aa7.28□□□□□ -1.24
USP54-205ENST00000424265 APOC4P55056 127 aa7.28□□□□□ -1.24
USP54-205ENST00000424265 CCDC140Q96MF4 163 aa7.28□□□□□ -1.24
USP54-205ENST00000424265 PRRC2AP48634 2157 aaKnown RBP7.28□□□□□ -1.24
USP54-205ENST00000424265 LINC01006Q8NI28 216 aa7.28□□□□□ -1.24
USP54-205ENST00000424265 SNURFQ9Y675 71 aa7.28□□□□□ -1.24
USP54-205ENST00000424265 RNASE4P34096 147 aaKnown RBP7.27□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms