RNA–Protein interactions for RNA: ENST00000414632.5

VPS41-205, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-205ENST00000414632 ZNF56Q15929 161 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 C1orf134Q5TEV5 83 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 SPANXN1Q5VSR9 72 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 UFSP1Q6NVU6 142 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 TEX261Q6UWH6 196 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 LYPD6BQ8NI32 183 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 PTH2Q96A98 100 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 SFRP2Q96HF1 295 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 PRADC1Q9BSG0 188 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 VCX2Q9H322 139 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 SCRT2Q9NQ03 307 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 TNFRSF18Q9Y5U5 241 aa3.31□□□□□ -1.88
VPS41-205ENST00000414632 A0A087X002 238 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 IGHV3-38A0A0C4DH36 116 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 TRBV6-4A0A1B0GX49 114 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 C9JQL5 133 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 SNAI2O43623 268 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 NDUFS6O75380 124 aaKnown RBP3.3□□□□□ -1.88
VPS41-205ENST00000414632 CRYGDP07320 174 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 MGPP08493 103 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 IGLC6P0CF74 106 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 TAGLN2P37802 199 aaKnown RBP3.3□□□□□ -1.88
VPS41-205ENST00000414632 LINC00315P59091 139 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 OR10J3Q5JRS4 329 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 ATRAIDQ6UW56 229 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 LYZL1Q6UWQ5 148 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 ZFP2Q6ZN57 461 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 NOTCH2NLQ7Z3S9 236 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 C6orf223Q8N319 242 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 FER1L6-AS1Q8NA97 138 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 ATP6V0E2Q8NHE4 81 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 SMIM7Q9BQ49 75 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 UPK3BQ9BT76 320 aa3.3□□□□□ -1.88
VPS41-205ENST00000414632 A0A1B0GVY2 172 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 IFITM10A6NMD0 228 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 ZNF727A8MUV8 499 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 TMEM250H0YL14 139 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 GATCO43716 136 aaKnown RBP3.29□□□□□ -1.88
VPS41-205ENST00000414632 IGHV3-30P01768 117 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 IGHV3-33P01772 117 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 CXCL1P09341 107 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 OR5AL1P0C617 328 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 SMIM17P0DL12 118 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 LINC00694P0DN24 101 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 IGHV3-30-3P0DP02 117 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 IGHV3-30-5P0DP03 117 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 FUSP35637 526 aaKnown RBP eCLIP3.29□□□□□ -1.88
VPS41-205ENST00000414632 RPS20P60866 119 aaKnown RBP3.29□□□□□ -1.88
VPS41-205ENST00000414632 TTC32Q5I0X7 151 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 SOHLH1Q5JUK2 328 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.29□□□□□ -1.88
VPS41-205ENST00000414632 DEFB104AQ8WTQ1 72 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 GTSF1Q8WW33 167 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 GTSF1LQ9H1H1 148 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 RPP21Q9H633 154 aaKnown RBP3.29□□□□□ -1.88
VPS41-205ENST00000414632 LY96Q9Y6Y9 160 aa3.29□□□□□ -1.88
VPS41-205ENST00000414632 TRAV8-6A0A0B4J262 113 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 LINC00587B1AMM8 73 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 NTF3P20783 257 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 EVI2AP22794 236 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 FOXA3P55318 350 aaPredicted RBP3.28□□□□□ -1.88
VPS41-205ENST00000414632 RAB4BP61018 213 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 ADIRFQ15847 76 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 LINC00336Q6ZUF6 198 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 LINC01551Q86U37 167 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 SMIM12Q96EX1 92 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 PGLYRP4Q96LB8 373 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 AP1S3Q96PC3 154 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 LITAFQ99732 161 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 BIN3Q9NQY0 253 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 KIF25-AS1Q9Y6Z4 181 aa3.28□□□□□ -1.88
VPS41-205ENST00000414632 LRP1BQ9NZR2 4599 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 APOBP04114 4563 aaKnown RBP3.27□□□□□ -1.89
VPS41-205ENST00000414632 TRAV26-2A0A0B4J265 109 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 XKRY2A2RUG3 117 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 S100A6P06703 90 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 DNAH10OSP0CZ25 163 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 CTRLP40313 264 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 UBE2D3P61077 147 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 RPL23P62829 140 aaKnown RBP3.27□□□□□ -1.89
VPS41-205ENST00000414632 UBE2D2P62837 147 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 CACNG7P62955 275 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 PEA15Q15121 130 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 FAM74A3Q4VXF1 159 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 LELP1Q5T871 98 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 FAM231DQ6ZW35 169 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 SH2D6Q7Z4S9 175 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 DAZ4Q86SG3 579 aaKnown RBP3.27□□□□□ -1.89
VPS41-205ENST00000414632 ISOC2Q96AB3 205 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 DNAJC30Q96LL9 226 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 DAZ3Q9NR90 486 aaKnown RBP3.27□□□□□ -1.89
VPS41-205ENST00000414632 HERC2O95714 4834 aa3.27□□□□□ -1.89
VPS41-205ENST00000414632 TRBV7-3A0A075B6L6 115 aa3.26□□□□□ -1.89
VPS41-205ENST00000414632 TRAV9-2A0A087WT02 112 aa3.26□□□□□ -1.89
VPS41-205ENST00000414632 TRBV10-1A0A0K0K1A3 114 aa3.26□□□□□ -1.89
VPS41-205ENST00000414632 F2Z2F3 143 aa3.26□□□□□ -1.89
VPS41-205ENST00000414632 M0QY20 66 aa3.26□□□□□ -1.89
VPS41-205ENST00000414632 TRGC1P0CF51 173 aa3.26□□□□□ -1.89
VPS41-205ENST00000414632 NDUFV3P56181 108 aaKnown RBP3.26□□□□□ -1.89
VPS41-205ENST00000414632 RAB14P61106 215 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms