RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 C7orf33Q8WU49 177 aa10.3□□□□□ -0.76
CCDC88A-204ENST00000413716 HIVEP2P31629 2446 aa10.3□□□□□ -0.76
CCDC88A-204ENST00000413716 IGKV1-17P01599 117 aa10.3□□□□□ -0.76
CCDC88A-204ENST00000413716 CTRLP40313 264 aa10.29□□□□□ -0.76
CCDC88A-204ENST00000413716 FHL1Q13642 323 aa10.29□□□□□ -0.76
CCDC88A-204ENST00000413716 A0A096LNI7 61 aa10.29□□□□□ -0.76
CCDC88A-204ENST00000413716 SIRPDQ9H106 197 aa10.28□□□□□ -0.76
CCDC88A-204ENST00000413716 ESM1Q9NQ30 184 aa10.28□□□□□ -0.76
CCDC88A-204ENST00000413716 PLA2G2AP14555 144 aa10.28□□□□□ -0.76
CCDC88A-204ENST00000413716 SPRY4Q9C004 299 aa10.28□□□□□ -0.76
CCDC88A-204ENST00000413716 RNF144BQ7Z419 303 aa10.27□□□□□ -0.76
CCDC88A-204ENST00000413716 C15orf65H3BRN8 121 aa10.27□□□□□ -0.77
CCDC88A-204ENST00000413716 MIFP14174 115 aa10.27□□□□□ -0.77
CCDC88A-204ENST00000413716 COX7CP15954 63 aa10.27□□□□□ -0.77
CCDC88A-204ENST00000413716 FLVCR1-AS1Q8TAF5 88 aa10.27□□□□□ -0.77
CCDC88A-204ENST00000413716 FAM30AQ9NZY2 134 aa10.27□□□□□ -0.77
CCDC88A-204ENST00000413716 TRBV7-6A0A0J9YX20 115 aa10.26□□□□□ -0.77
CCDC88A-204ENST00000413716 SPRY2O43597 315 aa10.26□□□□□ -0.77
CCDC88A-204ENST00000413716 ZFAND2AQ8N6M9 145 aa10.26□□□□□ -0.77
CCDC88A-204ENST00000413716 DEFB135Q30KP9 77 aa10.26□□□□□ -0.77
CCDC88A-204ENST00000413716 LINC00694P0DN24 101 aa10.26□□□□□ -0.77
CCDC88A-204ENST00000413716 SPINK6Q6UWN8 80 aa10.26□□□□□ -0.77
CCDC88A-204ENST00000413716 H7C423 109 aa10.26□□□□□ -0.77
CCDC88A-204ENST00000413716 WFDC13Q8IUB5 93 aa10.26□□□□□ -0.77
CCDC88A-204ENST00000413716 P0DMU3 169 aa10.26□□□□□ -0.77
CCDC88A-204ENST00000413716 FAM231AP0DMU4 169 aa10.26□□□□□ -0.77
CCDC88A-204ENST00000413716 FAM231CP0DMU5 169 aa10.26□□□□□ -0.77
CCDC88A-204ENST00000413716 NANOS2P60321 138 aaKnown RBP10.25□□□□□ -0.77
CCDC88A-204ENST00000413716 DHRS4-AS1Q9P1J3 65 aa10.25□□□□□ -0.77
CCDC88A-204ENST00000413716 A0A0J9YXY3 114 aa10.25□□□□□ -0.77
CCDC88A-204ENST00000413716 CRYGDP07320 174 aa10.24□□□□□ -0.77
CCDC88A-204ENST00000413716 TRBV6-1A0A0K0K1D8 114 aa10.24□□□□□ -0.77
CCDC88A-204ENST00000413716 LINC00269Q8N2A0 174 aa10.24□□□□□ -0.77
CCDC88A-204ENST00000413716 REG3AQ06141 175 aa10.24□□□□□ -0.77
CCDC88A-204ENST00000413716 SPATA12Q7Z6I5 190 aa10.24□□□□□ -0.77
CCDC88A-204ENST00000413716 B3GALT5-AS1P59052 145 aa10.24□□□□□ -0.77
CCDC88A-204ENST00000413716 COL5A1P20908 1838 aaPredicted RBP10.24□□□□□ -0.77
CCDC88A-204ENST00000413716 HRCT1Q6UXD1 115 aa10.23□□□□□ -0.77
CCDC88A-204ENST00000413716 FOXL2NBQ6ZUU3 175 aa10.23□□□□□ -0.77
CCDC88A-204ENST00000413716 SLPIP03973 132 aa10.23□□□□□ -0.77
CCDC88A-204ENST00000413716 M0QXV9 152 aa10.23□□□□□ -0.77
CCDC88A-204ENST00000413716 C4orf3Q8WVX3 66 aa10.23□□□□□ -0.77
CCDC88A-204ENST00000413716 CCDC179H3BU77 68 aa10.22□□□□□ -0.77
CCDC88A-204ENST00000413716 K7ENP7 123 aa10.22□□□□□ -0.77
CCDC88A-204ENST00000413716 TRBV10-1A0A0K0K1A3 114 aa10.22□□□□□ -0.77
CCDC88A-204ENST00000413716 IGF1P05019 195 aa10.22□□□□□ -0.77
CCDC88A-204ENST00000413716 X6R8D5 127 aa10.22□□□□□ -0.77
CCDC88A-204ENST00000413716 TRIAP1O43715 76 aa10.21□□□□□ -0.77
CCDC88A-204ENST00000413716 FAM19A5Q7Z5A7 132 aaPredicted RBP10.21□□□□□ -0.77
CCDC88A-204ENST00000413716 MSRB1Q9NZV6 116 aa10.21□□□□□ -0.78
CCDC88A-204ENST00000413716 IBA57-AS1B1ANH7 110 aa10.21□□□□□ -0.78
CCDC88A-204ENST00000413716 PRO0255Q9UI72 69 aa10.21□□□□□ -0.78
CCDC88A-204ENST00000413716 TTTY13Q9BZ97 58 aa10.21□□□□□ -0.78
CCDC88A-204ENST00000413716 CPAMD8Q8IZJ3 1885 aa10.2□□□□□ -0.78
CCDC88A-204ENST00000413716 C2orf70A6NJV1 201 aa10.2□□□□□ -0.78
CCDC88A-204ENST00000413716 C2CD3Q4AC94 2353 aa10.2□□□□□ -0.78
CCDC88A-204ENST00000413716 TTC28Q96AY4 2481 aa10.2□□□□□ -0.78
CCDC88A-204ENST00000413716 DEFB4AO15263 64 aa10.2□□□□□ -0.78
CCDC88A-204ENST00000413716 Q6ZS92 163 aa10.2□□□□□ -0.78
CCDC88A-204ENST00000413716 KAAG1Q9UBP8 84 aa10.2□□□□□ -0.78
CCDC88A-204ENST00000413716 SMAD5-AS1Q9Y6J3 95 aa10.19□□□□□ -0.78
CCDC88A-204ENST00000413716 PSPHP1O15172 72 aa10.19□□□□□ -0.78
CCDC88A-204ENST00000413716 DIAPH2-AS1Q14236 149 aa10.19□□□□□ -0.78
CCDC88A-204ENST00000413716 ADAMTS20P59510 1910 aa10.19□□□□□ -0.78
CCDC88A-204ENST00000413716 EBI3Q14213 229 aa10.19□□□□□ -0.78
CCDC88A-204ENST00000413716 TRBV30A0A0K0K1B3 111 aa10.19□□□□□ -0.78
CCDC88A-204ENST00000413716 C11orf45Q8TAV5 145 aa10.19□□□□□ -0.78
CCDC88A-204ENST00000413716 SLX1AQ9BQ83 275 aa10.19□□□□□ -0.78
CCDC88A-204ENST00000413716 TMEM105Q8N8V8 129 aa10.19□□□□□ -0.78
CCDC88A-204ENST00000413716 NUPR1O60356 82 aa10.18□□□□□ -0.78
CCDC88A-204ENST00000413716 CHCHD10Q8WYQ3 142 aaPredicted RBP10.18□□□□□ -0.78
CCDC88A-204ENST00000413716 C22orf34Q6ZV56 151 aa10.18□□□□□ -0.78
CCDC88A-204ENST00000413716 C20orf203Q8NBC4 194 aa10.18□□□□□ -0.78
CCDC88A-204ENST00000413716 TRBV6-5A0A0K0K1A5 114 aa10.18□□□□□ -0.78
CCDC88A-204ENST00000413716 YPEL4Q96NS1 127 aa10.18□□□□□ -0.78
CCDC88A-204ENST00000413716 ANKHD1Q8IWZ3 2542 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-204ENST00000413716 NRACQ8N912 160 aa10.17□□□□□ -0.78
CCDC88A-204ENST00000413716 ESRGQ1W209 222 aa10.17□□□□□ -0.78
CCDC88A-204ENST00000413716 C10orf25Q5T742 122 aa10.17□□□□□ -0.78
CCDC88A-204ENST00000413716 AJUBAQ96IF1 538 aa10.17□□□□□ -0.78
CCDC88A-204ENST00000413716 TRAV7A0A075B6U4 112 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 I3L2K1 104 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 RNF185Q96GF1 192 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 Q6ZR03 302 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 Q8N976 141 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 COL4A1P02462 1669 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 IGLV11-55A0A075B6I3 123 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 LINC00308Q8TCZ7 52 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 Q6Q795 121 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 DCANP1Q8TF63 244 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 SMIM9A6NGZ8 99 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 XAGE1AQ9HD64 81 aa10.16□□□□□ -0.78
CCDC88A-204ENST00000413716 SOSTDC1Q6X4U4 206 aa10.15□□□□□ -0.78
CCDC88A-204ENST00000413716 A0A1B0GXF2 115 aa10.15□□□□□ -0.78
CCDC88A-204ENST00000413716 K7EIM0 57 aa10.15□□□□□ -0.79
CCDC88A-204ENST00000413716 PLA2G1BP04054 148 aaKnown RBP10.15□□□□□ -0.79
CCDC88A-204ENST00000413716 IGKV2-28A0A075B6P5 120 aa10.14□□□□□ -0.79
CCDC88A-204ENST00000413716 IGKV2D-28P01615 120 aa10.14□□□□□ -0.79
CCDC88A-204ENST00000413716 CFAP126Q5VTH2 177 aa10.14□□□□□ -0.79
CCDC88A-204ENST00000413716 LTBP1Q14766 1721 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 191.6 ms